|
Name |
Accession |
Description |
Interval |
E-value |
| DUF4485 |
pfam14846 |
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately ... |
13-98 |
2.81e-29 |
|
Domain of unknown function (DUF4485); This family is found in eukaryotes, and is approximately 90 amino acids in length.
Pssm-ID: 464345 Cd Length: 83 Bit Score: 111.60 E-value: 2.81e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 13 LDAEFDHFVVDMKPFVLKLPHRTERQRCALWIRKLCEPSGTgagIMGRKNRNLYAKLLLHMLKRGALEGPFTHRPEPGTL 92
Cdd:pfam14846 1 LDEEFLYFLLDIKPLLANLNDKEDKIRAAEWLKKLCEPTHN---LEEKKNRNDYLQLLLLMLQNGRLEGPFNKPPPPGPL 77
|
....*.
gi 194386662 93 KILPSY 98
Cdd:pfam14846 78 PPLPEF 83
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
301-933 |
1.81e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.52 E-value: 1.81e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 301 YRSKQHETEetiRKLEKkVQTLIRDCQVIRETKEDQIAELKKICEQSTESlnndweKKLHNAVAEMEQEKFDLQKQHTEN 380
Cdd:COG1196 170 YKERKEEAE---RKLEA-TEENLERLEDILGELERQLEPLERQAEKAERY------RELKEELKELEAELLLLKLRELEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 381 IQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRN 460
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 461 TLHKEKDHLVNDYEQNmkllqtkyDADINLLKQEHALSASKASSMIEELEQnvcqLKQQLQESELQRKQQLRDQENKFQM 540
Cdd:COG1196 320 ELEEELAELEEELEEL--------EEELEELEEELEEAEEELEEAEAELAE----AEEALLEAEAELAEAEEELEELAEE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 541 EKSHLKHIYEEKAHDLQSE-LDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALGEFKRQVELNSEKVYA 619
Cdd:COG1196 388 LLEALRAAAELAAQLEELEeAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 620 EMKEQMEKVEADLTRSKSLREKQSKEflWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIEN-LE 698
Cdd:COG1196 468 LLEEAALLEAALAELLEELAEAAARL--LLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAaLA 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 699 KQLRAANMEHEN----QIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELG---LLREEEKQRATREHEIVVN 771
Cdd:COG1196 546 AALQNIVVEDDEvaaaAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLvasDLREADARYYVLGDTLLGR 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 772 KLKAESEKMKIELKKTHAAEtemtlekanskLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQ 851
Cdd:COG1196 626 TLVAARLEAALRRAVTLAGR-----------LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 852 KFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQMTYIRQEYETKLKGLMPASlRQELEDTISSLK 931
Cdd:COG1196 695 LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD-LEELERELERLE 773
|
..
gi 194386662 932 SQ 933
Cdd:COG1196 774 RE 775
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
558-938 |
5.30e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 5.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 558 SELDKGKEDTQKKihkfeeaLKEKEEQLTRVTEVQRLQAQQadaaLGEFKRQVElNSEKvYAEMKEQMEKVEADLtRSKS 637
Cdd:COG1196 168 SKYKERKEEAERK-------LEATEENLERLEDILGELERQ----LEPLERQAE-KAER-YRELKEELKELEAEL-LLLK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 638 LREKQSKeflwqlediRQRYEQQIVELKLEHEQEKTHLlqqhnaekdslvRDHEREIENLEKQLRAANMEHENQIQEFKK 717
Cdd:COG1196 234 LRELEAE---------LEELEAELEELEAELEELEAEL------------AELEAELEELRLELEELELELEEAQAEEYE 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 718 RDAQvIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIvvnKLKAESEKMKIELKKTHAAETEMTLE 797
Cdd:COG1196 293 LLAE-LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL---EEELEEAEEELEEAEAELAEAEEALL 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 798 KANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRlqdvrqkfEDEKKQLIRDNDQAIKVLQDELEN 877
Cdd:COG1196 369 EAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL--------ERLEEELEELEEALAELEEEEEEE 440
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 194386662 878 RSNQVRCAEKKLQHKELESQEQMTYIRQEYETKLKglmpASLRQELEDTISSLKSQVNFLQ 938
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALL----EAALAELLEELAEAAARLLLLL 497
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
245-935 |
4.93e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 63.84 E-value: 4.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 245 DDHFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKIL-ERKNNEIEELKTLYRSKQHETEETIRKLEKKvqtli 323
Cdd:pfam02463 185 LAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLyLDYLKLNEERIDLLQELLRDEQEEIESSKQE----- 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 324 rdcQVIRETKEDQIAELKKICEQSTESLNNDWEKK-LHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQ 402
Cdd:pfam02463 260 ---IEKEEEKLAQVLKENKEEEKEKKLQEEELKLLaKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 403 TQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQT 482
Cdd:pfam02463 337 IEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQ 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 483 KYDADINLLKQEHA-LSASKASSMIEELEQNVCQLKQQLQESELQRKQ----QLRDQENKFQMEKSHLKHIYEEKAHDLQ 557
Cdd:pfam02463 417 LEDLLKEEKKEELEiLEEEEESIELKQGKLTEEKEELEKQELKLLKDElelkKSEDLLKETQLVKLQEQLELLLSRQKLE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 558 SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALGEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKS 637
Cdd:pfam02463 497 ERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLG 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 638 LREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAeKDSLVRDHEREIENLEKQLRAANMEHENQiqeFKK 717
Cdd:pfam02463 577 ARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDK-RAKVVEGILKDTELTKLKESAKAKESGLR---KGV 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 718 RDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLE 797
Cdd:pfam02463 653 SLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQD 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 798 KANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELEN 877
Cdd:pfam02463 733 KINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKE 812
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 194386662 878 RSNQVRCAEKKLQHKELESQEQMTYIRQEYETKLKGLMPASLRQELEDTISSLKSQVN 935
Cdd:pfam02463 813 EAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQ 870
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
420-739 |
6.58e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 6.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 420 LTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyDADINLLKQEhalsA 499
Cdd:TIGR02168 661 ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL-SRQISALRKD----L 735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 500 SKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHlkhiyEEKAHDLQSELDKGKEDTQkkihKFEEALK 579
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA-----EAEIEELEAQIEQLKEELK----ALREALD 806
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 580 EKEEQLTRVTE---VQRLQAQQADAALGEFKRQVElNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEfLWQLEDIRQR 656
Cdd:TIGR02168 807 ELRAELTLLNEeaaNLRERLESLERRIAATERRLE-DLEEQIEELSEDIESLAAEIEELEELIEELESE-LEALLNERAS 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 657 YEQQIVELKL----------EHEQEKTHLLQQHNAEKDSLVRDHER------EIENLEKQLRA-ANMEHENQIQEFKKRD 719
Cdd:TIGR02168 885 LEEALALLRSeleelseelrELESKRSELRRELEELREKLAQLELRleglevRIDNLQERLSEeYSLTLEEAEALENKIE 964
|
330 340
....*....|....*....|
gi 194386662 720 AQvIADMEAQVHKLREELIN 739
Cdd:TIGR02168 965 DD-EEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
253-952 |
1.30e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 1.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 253 REKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLY---RSKQHETEETIRKLEKKVQTL---IRDC 326
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLeelRLEVSELEEEIEELQKELYALaneISRL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 327 QVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNA--VAEMEQEKFDLQKQHT------ENIQELLEDTNVRLNKMESE 398
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAeeLAELEEKLEELKEELEsleaelEELEAELEELESRLEELEEQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 399 YMAQTQ---STNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQI-----TCSELQEVKARRNTLHKEKDHLV 470
Cdd:TIGR02168 381 LETLRSkvaQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaelkeLQAELEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 471 NDYEQNMKLLQTKYDADINLLKQEHALSASKAS--SMIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHI 548
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARLDSleRLQENLEGFSEGVKALLKNQS-GLSGILGVLSELISVDEGYEAAI 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 549 YEEKAHDLQSELDKGKEDTQKKIhkfeEALKEKEEQLTRVTEVQRLQAQQADAALGEFkrqveLNSEKVYAEMKEQMEKV 628
Cdd:TIGR02168 540 EAALGGRLQAVVVENLNAAKKAI----AFLKQNELGRVTFLPLDSIKGTEIQGNDREI-----LKNIEGFLGVAKDLVKF 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 629 EADLTRSKSLREKQSK--EFLWQLEDIRQRYEQQIVELKLEHEQEKTH-LLQQHNAEKDSLVRDHEREIENLEKQLRAAn 705
Cdd:TIGR02168 611 DPKLRKALSYLLGGVLvvDDLDNALELAKKLRPGYRIVTLDGDLVRPGgVITGGSAKTNSSILERRREIEELEEKIEEL- 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 706 mehENQIQEFKKRDAQV---IADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKI 782
Cdd:TIGR02168 690 ---EEKIAELEKALAELrkeLEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 783 ELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVrqkfeDEKKQLIR 862
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI-----AATERRLE 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 863 DNDQAIKVLQDELENRSNQVRcaekKLQHKELESQEQMTYIRQEYETKLKGLMPASLR-QELEDTISSLKSQVNFLQKRA 941
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIE----ELEELIEELESELEALLNERASLEEALALLRSElEELSEELRELESKRSELRREL 917
|
730
....*....|.
gi 194386662 942 SILQEELTTYQ 952
Cdd:TIGR02168 918 EELREKLAQLE 928
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
270-937 |
3.81e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 3.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 270 EEKLKLQQKHDADVQKILERKNNEIEELKtlyrSKQHETEETIRKLEKKVQTLirdcQVIRETKEDQIAELKKICEQStE 349
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELE----SKLDELAEELAELEEKLEEL----KEELESLEAELEELEAELEEL-E 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 350 SLNNDWEKKLHN---AVAEMEQEKFDLQKQhTENIQELLEDTNVRLNKMESEYMAQTQS-TNHMIKELEARVQQLTGEAE 425
Cdd:TIGR02168 372 SRLEELEEQLETlrsKVAQLELQIASLNNE-IERLEARLERLEDRRERLQQEIEELLKKlEEAELKELQAELEELEEELE 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 426 NSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQnmklLQTKYDADINLLKQEHALSASK--AS 503
Cdd:TIGR02168 451 ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEN----LEGFSEGVKALLKNQSGLSGILgvLS 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 504 SMIE--------------ELEQNVC--QLKQQLQESELQRKQQLR-------DQENKFQMEKSHLKHI-YEEKAHDLQSE 559
Cdd:TIGR02168 527 ELISvdegyeaaieaalgGRLQAVVveNLNAAKKAIAFLKQNELGrvtflplDSIKGTEIQGNDREILkNIEGFLGVAKD 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 560 LDKGKEDTQKKIH----------KFEEAL---KEKEEQLTRVTE-------VQRLQAQQADAALGEFKRQVELnsEKVYA 619
Cdd:TIGR02168 607 LVKFDPKLRKALSyllggvlvvdDLDNALelaKKLRPGYRIVTLdgdlvrpGGVITGGSAKTNSSILERRREI--EELEE 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 620 EMKEQMEKVEADLTRSKSLREKQSkEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDslVRDHEREIENLEK 699
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER--IAQLSKELTELEA 761
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 700 QlRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREeekqratrehEIVVNKLKAESEK 779
Cdd:TIGR02168 762 E-IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE----------EAANLRERLESLE 830
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 780 MKIELKKTHAAETEMTLEKANSKLKQIEKEytqkLAKSSQIIAELQTTISSLKEENSQQQlAAERRLQDVRQKFEDEkkq 859
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAE----IEELEELIEELESELEALLNERASLE-EALALLRSELEELSEE--- 902
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 860 lIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQMTYIRQEYETKLKGLMP-----ASLRQELEDTISSLKSQV 934
Cdd:TIGR02168 903 -LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEAlenkiEDDEEEARRRLKRLENKI 981
|
...
gi 194386662 935 NFL 937
Cdd:TIGR02168 982 KEL 984
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
379-934 |
4.10e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.46 E-value: 4.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 379 ENIQELLEDTNVRLNKMEsEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQitcsELQEVKAR 458
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLE-KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 459 RNTLHKEKDHLvndyEQNMKLLQTKydadinllKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRK-QQLRDQENK 537
Cdd:PRK03918 240 IEELEKELESL----EGSKRKLEEK--------IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKlSEFYEEYLD 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 538 FQMEKSHLKHIYEEKAHDLQ-------------SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALG 604
Cdd:PRK03918 308 ELREIEKRLSRLEEEINGIEerikeleekeerlEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 605 EFKRQVElNSEKVYAEMKEQMEKVEADLTRSKSlREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEkthLLQQHNAEKD 684
Cdd:PRK03918 388 KLEKELE-ELEKAKEEIEEEISKITARIGELKK-EIKELKKAIEELKKAKGKCPVCGRELTEEHRKE---LLEEYTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 685 SlVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQviadmeaqvHKLREELINVNSqrkqqlvELGLLREEEKQRATR 764
Cdd:PRK03918 463 R-IEKELKEIEEKERKLRKELRELEKVLKKESELIKL---------KELAEQLKELEE-------KLKKYNLEELEKKAE 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 765 EHEIV---VNKLKAESEKMKIELKKTHA-----AETEMTLEKANSKLKQIEKEYTQKLAKSsqiIAELQTTISSLKE--E 834
Cdd:PRK03918 526 EYEKLkekLIKLKGEIKSLKKELEKLEElkkklAELEKKLDELEEELAELLKELEELGFES---VEELEERLKELEPfyN 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 835 NSQQQLAAERRLQDVRQKFEDEKKQL--IRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELEsqEQMTYIRQEYETKLK 912
Cdd:PRK03918 603 EYLELKDAEKELEREEKELKKLEEELdkAFEELAETEKRLEELRKELEELEKKYSEEEYEELR--EEYLELSRELAGLRA 680
|
570 580
....*....|....*....|...
gi 194386662 913 GLMPA-SLRQELEDTISSLKSQV 934
Cdd:PRK03918 681 ELEELeKRREEIKKTLEKLKEEL 703
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
252-950 |
4.95e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.52 E-value: 4.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 252 IREKELDMKTKMMEAKFHEEKL----KLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQ 327
Cdd:pfam15921 108 LRQSVIDLQTKLQEMQMERDAMadirRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQ 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 328 VIRETKED-QIAELKKICEQstESLNNDWEKKLHNAVAEMEQE---KFDLQKQHTENIQELLEDTNVR-LNKMESEYMAQ 402
Cdd:pfam15921 188 EIRSILVDfEEASGKKIYEH--DSMSTMHFRSLGSAISKILREldtEISYLKGRIFPVEDQLEALKSEsQNKIELLLQQH 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 403 TQSTNHMIKELEARVQQLTGEAE------NSNLQRQKLIQEKAELERC-YQITCSELQEVKARRNTLHKEKDHLVNDYEQ 475
Cdd:pfam15921 266 QDRIEQLISEHEVEITGLTEKASsarsqaNSIQSQLEIIQEQARNQNSmYMRQLSDLESTVSQLRSELREAKRMYEDKIE 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 476 NMKLLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLR--DQENKFQMEKSHLKHIYEEKA 553
Cdd:pfam15921 346 ELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwDRDTGNSITIDHLRRELDDRN 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 554 HDLQ---SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEvqrLQAQQADAALGEFKRQVELNSEKVYAEmkeQMEKVEA 630
Cdd:pfam15921 426 MEVQrleALLKAMKSECQGQMERQMAAIQGKNESLEKVSS---LTAQLESTKEMLRKVVEELTAKKMTLE---SSERTVS 499
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 631 DLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELK--------LEHEQEKTHLLQQHNAEKDSLVRDHEREIENLekqlr 702
Cdd:pfam15921 500 DLTASLQEKERAIEATNAEITKLRSRVDLKLQELQhlknegdhLRNVQTECEALKLQMAEKDKVIEILRQQIENM----- 574
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 703 aanmeheNQIQEFKKRDAQVIADMEAQVhklrEELINvnsQRKQQLVELGLLREEeKQRATREHEIVVNKLkaESEKMKi 782
Cdd:pfam15921 575 -------TQLVGQHGRTAGAMQVEKAQL----EKEIN---DRRLELQEFKILKDK-KDAKIRELEARVSDL--ELEKVK- 636
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 783 elkkthaaetemtLEKANSKLKQIEKEYTQKlakSSQIIAELQTTISSLKEENSQQQLAaERRLQDVRQKFEDEKKQLir 862
Cdd:pfam15921 637 -------------LVNAGSERLRAVKDIKQE---RDQLLNEVKTSRNELNSLSEDYEVL-KRNFRNKSEEMETTTNKL-- 697
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 863 dnDQAIKVLQDELENRSNQVRCAEKKLQHK---ELESQEQMTYIRQEYETKlkglmpASLRQELEDTISSLKSQVNFLQK 939
Cdd:pfam15921 698 --KMQLKSAQSELEQTRNTLKSMEGSDGHAmkvAMGMQKQITAKRGQIDAL------QSKIQFLEEAMTNANKEKHFLKE 769
|
730
....*....|.
gi 194386662 940 RASILQEELTT 950
Cdd:pfam15921 770 EKNKLSQELST 780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
272-824 |
8.44e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 8.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 272 KLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKIcEQSTESL 351
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL-ARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 352 NNDWEKKLHnavAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQR 431
Cdd:COG1196 305 ARLEERRRE---LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 432 QKLIQEKAELERcyqitcsELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEHALSASKASSMIEELEQ 511
Cdd:COG1196 382 EELAEELLEALR-------AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 512 NVCQLKQQLQESELQRK--------QQLRDQENKFQMEKSHLKHIYEEKAHDLQSELDKGKEDTQKKIHK--FEEALKEK 581
Cdd:COG1196 455 EEEEEALLELLAELLEEaalleaalAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGavAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 582 EEQLTRVTEVQRLQAQQADAALGEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQI 661
Cdd:COG1196 535 AYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 662 VELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLE--KQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELIN 739
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLegEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 740 VNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQ 819
Cdd:COG1196 695 LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
....*
gi 194386662 820 IIAEL 824
Cdd:COG1196 775 EIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
410-940 |
8.44e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 8.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 410 IKELEARVQQLTGEAENSnLQRQKLIQEKAELERCYQItcSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyDADIN 489
Cdd:COG1196 195 LGELERQLEPLERQAEKA-ERYRELKEELKELEAELLL--LKLRELEAELEELEAELEELEAELEELEAELAEL-EAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 490 LLKQEHALSASKASSM----------IEELEQNVcQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEEKAHDLQsE 559
Cdd:COG1196 271 ELRLELEELELELEEAqaeeyellaeLARLEQDI-ARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELE-E 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 560 LDKGKEDTQKKIHKFEEALKEKEEQL-----TRVTEVQRLQAQQADAALGEFKRQVELNSEKVY----AEMKEQMEKVEA 630
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELaeaeeELEELAEELLEALRAAAELAAQLEELEEAEEALlerlERLEEELEELEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 631 DLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHEN 710
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 711 QIQEFKKRDAQ--------VIADMEAQVHKLREELIN---VNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEK 779
Cdd:COG1196 509 GVKAALLLAGLrglagavaVLIGVEAAYEAALEAALAaalQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAAL 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 780 MKIELKKT------------------------HAAETEMTLEKANSKLKQIEKEYTQKLAKS--SQIIAELQTTISSLKE 833
Cdd:COG1196 589 AAALARGAigaavdlvasdlreadaryyvlgdTLLGRTLVAARLEAALRRAVTLAGRLREVTleGEGGSAGGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 834 ENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQMTYIRQEYETKLKG 913
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
570 580
....*....|....*....|....*..
gi 194386662 914 LMPASLRQELEDTISSLKSQVNFLQKR 940
Cdd:COG1196 749 EEEALEELPEPPDLEELERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
571-906 |
2.03e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.53 E-value: 2.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 571 IHKFEEALKEKEEQLTRVTE-VQRLQAqqadaALGEFKRQV---ELNSEKV--YAEMKEQMEKVEADL--TRSKSLREKq 642
Cdd:TIGR02168 167 ISKYKERRKETERKLERTREnLDRLED-----ILNELERQLkslERQAEKAerYKELKAELRELELALlvLRLEELREE- 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 643 skeflwqlediRQRYEQQIVELKLEHEQEKTHLlqqhnAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEfkkrdaqv 722
Cdd:TIGR02168 241 -----------LEELQEELKEAEEELEELTAEL-----QELEEKLEELRLEVSELEEEIEELQKELYALANE-------- 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 723 IADMEAQVHKLREELINVNSQRKQQLVELGLL--REEEKQRATREHEIVVNKLKAESEKMKIELKkthaaETEMTLEKAN 800
Cdd:TIGR02168 297 ISRLEQQKQILRERLANLERQLEELEAQLEELesKLDELAEELAELEEKLEELKEELESLEAELE-----ELEAELEELE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 801 SKLKQIEKEYTQKLAKSSQI---IAELQTTISSLKEENSQQQLAAERRLQ---DVRQKFEDEKKQLIRDNDQAIKVLQDE 874
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLelqIASLNNEIERLEARLERLEDRRERLQQeieELLKKLEEAELKELQAELEELEEELEE 451
|
330 340 350
....*....|....*....|....*....|..
gi 194386662 875 LENRSNQVRCAEKKLQHKELESQEQMTYIRQE 906
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERE 483
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
249-809 |
2.23e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 2.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 249 LSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQV 328
Cdd:COG1196 231 LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 329 IRETkEDQIAELKKICEQSTESLNNDWEKK--LHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQST 406
Cdd:COG1196 311 RREL-EERLEELEEELAELEEELEELEEELeeLEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 407 NHM--IKELEARVQQLTGEAENSNLQRQKLIQEKAELERcyqitcsELQEVKARRNTLHKEkdhlvndyEQNMKLLQTKY 484
Cdd:COG1196 390 EALraAAELAAQLEELEEAEEALLERLERLEEELEELEE-------ALAELEEEEEEEEEA--------LEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 485 DADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEEKAHDLQSELDKGK 564
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEA 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 565 EDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALGEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSK 644
Cdd:COG1196 535 AYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 645 EFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDsLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIA 724
Cdd:COG1196 615 YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE-GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 725 DMEAQVHKLREELiNVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKthAAETEMTLEKANSKLK 804
Cdd:COG1196 694 ELEEALLAEEEEE-RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE--ELPEPPDLEELERELE 770
|
....*
gi 194386662 805 QIEKE 809
Cdd:COG1196 771 RLERE 775
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
254-877 |
2.46e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.23 E-value: 2.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 254 EKELDMKTKMMEAKFHEEKLKLQQKhdadvqkilERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETK 333
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDAEEAKKAEE---------ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD 1293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 334 EDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEY-MAQTQSTNHMIKE 412
Cdd:PTZ00121 1294 EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAeAAEEKAEAAEKKK 1373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 413 LEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLhKEKDHLVNDYEQNMKLLQTKYDADINLLK 492
Cdd:PTZ00121 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEA-KKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 493 QEHALSASKASSMIEElEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEEKAHDLQSELDKGKEDTQKKIH 572
Cdd:PTZ00121 1453 AEEAKKAEEAKKKAEE-AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 573 KfeealKEKEEQLTRVTEVQRLQaqqadaalgEFKRQVELNSEKvyaEMKEQMEKVEADLTRSKSLREKqskeflwqlED 652
Cdd:PTZ00121 1532 E-----AKKADEAKKAEEKKKAD---------ELKKAEELKKAE---EKKKAEEAKKAEEDKNMALRKA---------EE 1585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 653 IRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQlraaNMEHENQIQEFKKRDAQVIADMEAQVHK 732
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK----KVEQLKKKEAEEKKKAEELKKAEEENKI 1661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 733 LREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEK--EY 810
Cdd:PTZ00121 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKeaEE 1741
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 194386662 811 TQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIR-DNDQAIKVLQDELEN 877
Cdd:PTZ00121 1742 DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRmEVDKKIKDIFDNFAN 1809
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
415-954 |
2.51e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 2.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 415 ARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYeQNMKLLQTKYDADINLLKQE 494
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL-YALANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 495 HALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHlkhiyeEKAHDLQSELDKGKEDTQKKIHKF 574
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL------EELEAELEELESRLEELEEQLETL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 575 EEALKEKEEQLtrvtEVQRLQAQQADAALGEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIR 654
Cdd:TIGR02168 385 RSKVAQLELQI----ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 655 QRYE--QQIVELKLEHEQEKTHLLQQHNAEKDSLVRDhEREIENLEKQLRAAnMEHENQIQEFKKRDAQVI---ADMEAQ 729
Cdd:TIGR02168 461 EALEelREELEEAEQALDAAERELAQLQARLDSLERL-QENLEGFSEGVKAL-LKNQSGLSGILGVLSELIsvdEGYEAA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 730 VHK-LREELINVNSQRKQQ-LVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEK--------- 798
Cdd:TIGR02168 539 IEAaLGGRLQAVVVENLNAaKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKfdpklrkal 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 799 ---------------ANSKLKQIEKEYT-----------------------QKLAKSSQIIAELQTTISSL--KEENSQQ 838
Cdd:TIGR02168 619 syllggvlvvddldnALELAKKLRPGYRivtldgdlvrpggvitggsaktnSSILERRREIEELEEKIEELeeKIAELEK 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 839 QLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQmTYIRQEYETKLKGLMPA- 917
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL-EAEIEELEERLEEAEEEl 777
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 194386662 918 ----SLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGR 954
Cdd:TIGR02168 778 aeaeAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
505-950 |
1.17e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.89 E-value: 1.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 505 MIEELEQNVCQLKQQLQES-ELQRKQQ---------LRDQENKFQMEKSHLKHIYEEKAhdlQSELDKgKEDTQKKIHKF 574
Cdd:pfam15921 79 VLEEYSHQVKDLQRRLNESnELHEKQKfylrqsvidLQTKLQEMQMERDAMADIRRRES---QSQEDL-RNQLQNTVHEL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 575 EEALKEKEEQL----TRVTEVQRLQAQQaDAALGEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQL 650
Cdd:pfam15921 155 EAAKCLKEDMLedsnTQIEQLRKMMLSH-EGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEI 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 651 EDIRQR---YEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEhENQIQefkkrdaqviadme 727
Cdd:pfam15921 234 SYLKGRifpVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQ-ANSIQ-------------- 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 728 AQVHKLREELINVNSQRKQQLVELgllreeekqratrehEIVVNKLKAESEKMKiELKKTHAAETEMTLEKANSKLKQIE 807
Cdd:pfam15921 299 SQLEIIQEQARNQNSMYMRQLSDL---------------ESTVSQLRSELREAK-RMYEDKIEELEKQLVLANSELTEAR 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 808 KEYTQKLAKSSQIIAELQTTISSLKEEnsQQQLAAERrlqdvrqkfEDEKKQLIRDNDQAIKV--LQDELENRSNQVRCA 885
Cdd:pfam15921 363 TERDQFSQESGNLDDQLQKLLADLHKR--EKELSLEK---------EQNKRLWDRDTGNSITIdhLRRELDDRNMEVQRL 431
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 194386662 886 EKKLQHKELESQEQMTYIRQEYETKLKGLMP-ASLRQELEDTISSLKSQVNFLQKRASILQEELTT 950
Cdd:pfam15921 432 EALLKAMKSECQGQMERQMAAIQGKNESLEKvSSLTAQLESTKEMLRKVVEELTAKKMTLESSERT 497
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
292-915 |
1.54e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 55.61 E-value: 1.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 292 NEIEELKTLYRSKQH------ETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAE 365
Cdd:pfam12128 248 QEFNTLESAELRLSHlhfgykSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEAL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 366 MEQ----EKFDLQKQHTEniQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQ--------QLTGEAENSNLQRQK 433
Cdd:pfam12128 328 EDQhgafLDADIETAAAD--QEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSkikeqnnrDIAGIKDKLAKIREA 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 434 LIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEhALSASKASSMIEELEQnv 513
Cdd:pfam12128 406 RDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQL-ENFDERIERAREEQEA-- 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 514 CQLKQQLQESELQRKQQLRDQenkfQMEKSHLKHIYeekAHDLQSELDKGKEDTQKKIHKFEEALKEK----EEQLTRVT 589
Cdd:pfam12128 483 ANAEVERLQSELRQARKRRDQ----ASEALRQASRR---LEERQSALDELELQLFPQAGTLLHFLRKEapdwEQSIGKVI 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 590 EVQRLQAQQADAALGEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHE 669
Cdd:pfam12128 556 SPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELE 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 670 QEKTHLLQQHNAEKDSlvrdhEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLV 749
Cdd:pfam12128 636 KASREETFARTALKNA-----RLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKR 710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 750 ELGLLREEEKQratreheIVVNKLKAESEKMKIELKKTHAAetemtlekANSKLKQIEKEYTQKLAK---SSQIIAELQT 826
Cdd:pfam12128 711 EARTEKQAYWQ-------VVEGALDAQLALLKAAIAARRSG--------AKAELKALETWYKRDLASlgvDPDVIAKLKR 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 827 TISSLKEENSQqqlaAERRLQDVRQKFE----------DEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQhKELES 896
Cdd:pfam12128 776 EIRTLERKIER----IAVRRQEVLRYFDwyqetwlqrrPRLATQLSNIERAISELQQQLARLIADTKLRRAKLE-MERKA 850
|
650
....*....|....*....
gi 194386662 897 QEQMTYIRQEYETKLKGLM 915
Cdd:pfam12128 851 SEKQQVRLSENLRGLRCEM 869
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
634-912 |
1.62e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 55.13 E-value: 1.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 634 RSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLV-RDHEREIENLEKQLraanmehENQI 712
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIyAEQERMAMEREREL-------ERIR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 713 QEFKKRDAQVIADME--AQVHKLRE-ELINVNSQRKQQLVELGL-------LREEEKQRATREHEIVVNKLKAESEKMKI 782
Cdd:pfam17380 355 QEERKRELERIRQEEiaMEISRMRElERLQMERQQKNERVRQELeaarkvkILEEERQRKIQQQKVEMEQIRAEQEEARQ 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 783 ELKKTHAAETEMTLEkansKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIR 862
Cdd:pfam17380 435 REVRRLEEERAREME----RVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIE 510
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 194386662 863 DNDQAiKVLQDELENRSNQVRCAEKKLQHKELESQEQMTYIRQEYETKLK 912
Cdd:pfam17380 511 EERKR-KLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMR 559
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
410-735 |
2.24e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 2.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 410 IKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADIN 489
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 490 LLKQEHALSA--SKASSMIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKhiyeEKAHDLQSELD---KGK 564
Cdd:TIGR02168 759 LEAEIEELEErlEEAEEELAEAEAEIEELEAQIEQLK-EELKALREALDELRAELTLLN----EEAANLRERLEsleRRI 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 565 EDTQKKIHKFEEALKEKEEQLTRVT------EVQRLQAQQADAALGEFKRQVELNSEKVYAEMKEQMEKVEA------DL 632
Cdd:TIGR02168 834 AATERRLEDLEEQIEELSEDIESLAaeieelEELIEELESELEALLNERASLEEALALLRSELEELSEELREleskrsEL 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 633 TRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSL--VRDHEREIENLEKQLRAANMEHEN 710
Cdd:TIGR02168 914 RRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEeeARRRLKRLENKIKELGPVNLAAIE 993
|
330 340
....*....|....*....|....*....
gi 194386662 711 QIQEFKKR----DAQvIADMEAQVHKLRE 735
Cdd:TIGR02168 994 EYEELKERydflTAQ-KEDLTEAKETLEE 1021
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
253-877 |
3.02e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 3.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 253 REKELDMKTKMMEAKFHEEKLKLQQKHDadVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRET 332
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEELEA--ELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 333 KEDQIAELkkicEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHtENIQELLEDTNVRLNKMESEY------MAQTQST 406
Cdd:TIGR02168 416 RERLQQEI----EELLKKLEEAELKELQAELEELEEELEELQEEL-ERLEEALEELREELEEAEQALdaaereLAQLQAR 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 407 NHMIKELEARVQQLTGEAENSNLQRQK----------LIQEKAELERCYQITCSE---------LQEVKARRNTLHKEKD 467
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKNQSGlsgilgvlseLISVDEGYEAAIEAALGGrlqavvvenLNAAKKAIAFLKQNEL 570
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 468 HLVNDYEqnmklLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQ------------ESELQRKQQLRDQE 535
Cdd:TIGR02168 571 GRVTFLP-----LDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddlDNALELAKKLRPGY 645
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 536 NKFQMEKSHLKHIY-----EEKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVtevqrLQAQQADAALGEFKRQV 610
Cdd:TIGR02168 646 RIVTLDGDLVRPGGvitggSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAEL-----RKELEELEEELEQLRKE 720
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 611 ELNSEKVYAEMKEQMEKVEAdltrskslREKQSKEFLWQLEDIRQRYEQQIVEL--KLEHEQEKTHLLQQHNAEKDSLVR 688
Cdd:TIGR02168 721 LEELSRQISALRKDLARLEA--------EVEQLEERIAQLSKELTELEAEIEELeeRLEEAEEELAEAEAEIEELEAQIE 792
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 689 DHEREIENLEKQLRAANMEHENQIQEFKKRdAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLRE--EEKQRATREH 766
Cdd:TIGR02168 793 QLKEELKALREALDELRAELTLLNEEAANL-RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAeiEELEELIEEL 871
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 767 EIVVNKLKAESEKMKIELK--KTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTisSLKEENSQQQLAAE- 843
Cdd:TIGR02168 872 ESELEALLNERASLEEALAllRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL--EVRIDNLQERLSEEy 949
|
650 660 670
....*....|....*....|....*....|....
gi 194386662 844 RRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELEN 877
Cdd:TIGR02168 950 SLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
254-951 |
5.09e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 5.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 254 EKELDMKTKMMEAKFHEeKLKLQQKHDADVQKI---LERKNNEIEELKTLYRSKQ---HETEETIRKLEKKVQTLIRDCQ 327
Cdd:TIGR02169 211 ERYQALLKEKREYEGYE-LLKEKEALERQKEAIerqLASLEEELEKLTEEISELEkrlEEIEQLLEELNKKIKDLGEEEQ 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 328 V-IRETKEDQIAELKKIceQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHtENIQELLEDTNVRLNKMESEYMAQTQst 406
Cdd:TIGR02169 290 LrVKEKIGELEAEIASL--ERSIAEKERELEDAEERLAKLEAEIDKLLAEI-EELEREIEEERKRRDKLTEEYAELKE-- 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 407 nhmikELEARVQQLTGEAENSNLQRQKLIQEKAELErcyqitcselqEVKARRNTLHKEKDHLVNDYEQ-NMKLLQTKyd 485
Cdd:TIGR02169 365 -----ELEDLRAELEEVDKEFAETRDELKDYREKLE-----------KLKREINELKRELDRLQEELQRlSEELADLN-- 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 486 ADINLLKQEHALSASKASSMIEELEQNVCQLKQqLQESELQRKQQLRDQENKFQmekshlkhIYEEKAHDLQSELDKGK- 564
Cdd:TIGR02169 427 AAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ-LAADLSKYEQELYDLKEEYD--------RVEKELSKLQRELAEAEa 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 565 -----EDTQKKIHKFEEALKEKEE----QLTRVTEVQRLQAQQADAALGEFKRQVELNSEKVYAEMKEQMEKVEAD---- 631
Cdd:TIGR02169 498 qarasEERVRGGRAVEEVLKASIQgvhgTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGratf 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 632 --LTRSKS-------LREKQSKEFLWQLEDIRQRYEQQIVELkleheQEKTHLLQQHNAEKDSL--VRDHEREIENLEKQ 700
Cdd:TIGR02169 578 lpLNKMRDerrdlsiLSEDGVIGFAVDLVEFDPKYEPAFKYV-----FGDTLVVEDIEAARRLMgkYRMVTLEGELFEKS 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 701 ------LRAANMEHENQIQEFKK--RDAQVIADMEAQVHKLREELINVNSQRKQQLVELgllREEEKQRATREHEIVVNK 772
Cdd:TIGR02169 653 gamtggSRAPRGGILFSRSEPAElqRLRERLEGLKRELSSLQSELRRIENRLDELSQEL---SDASRKIGEIEKEIEQLE 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 773 LKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKE---YTQKLAK------------SSQIIAELQTTISSLKEENSQ 837
Cdd:TIGR02169 730 QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARieeLEEDLHKleealndlearlSHSRIPEIQAELSKLEEEVSR 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 838 QqlaaERRLQDVRQKFEDE--KKQLIRDNDQAIKVLQDELENR--SNQVRCAEKKLQHKELESQ-EQMTYIRQEYETKLK 912
Cdd:TIGR02169 810 I----EARLREIEQKLNRLtlEKEYLEKEIQELQEQRIDLKEQikSIEKEIENLNGKKEELEEElEELEAALRDLESRLG 885
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 194386662 913 GL------MPASLR------QELEDTISSLKSQVNFLQKRASILQEELTTY 951
Cdd:TIGR02169 886 DLkkerdeLEAQLRelerkiEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
237-819 |
5.48e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 5.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 237 LRKSSSFHDDHFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTL--YRSKQHETEETIRK 314
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdeAKKKAEEAKKKADA 1333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 315 LEKKVQTLIRDCQVIRETKEDQIAELKKICEQS-TESLNNDWEKKLHNAVAEMEQEKF---DLQKQHTENIQELLEDTNV 390
Cdd:PTZ00121 1334 AKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAeAAEKKKEEAKKKADAAKKKAEEKKkadEAKKKAEEDKKKADELKKA 1413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 391 RLNKMESEYMAQTQSTNHMIKELEARVQQ------LTGEAENS----NLQRQKLIQEKAELERCYQITCSELQEVKARRN 460
Cdd:PTZ00121 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEakkadeAKKKAEEAkkaeEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE 1493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 461 TLHKEKDHLVNDYEQNMKLLQTKYDADI----NLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRK--QQLRDQ 534
Cdd:PTZ00121 1494 EAKKKADEAKKAAEAKKKADEAKKAEEAkkadEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKaeEAKKAE 1573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 535 ENKFQMEK--SHLKHIYEEKAHDLQSELDKGKEDTQKKIHKFEEAlKEKEEQLTRVTEVQRLQAQQADAALGEFKRQVEL 612
Cdd:PTZ00121 1574 EDKNMALRkaEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA-KIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL 1652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 613 NSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQ---IVELKLEHEQEKTHLLQQHNAEKDSLVRD 689
Cdd:PTZ00121 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEakkAEELKKKEAEEKKKAEELKKAEEENKIKA 1732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 690 HEREIENLEKQLRAANMEHEnqiQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIV 769
Cdd:PTZ00121 1733 EEAKKEAEEDKKKAEEAKKD---EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFAN 1809
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 194386662 770 VNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQ 819
Cdd:PTZ00121 1810 IIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNE 1859
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
554-916 |
7.93e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 53.20 E-value: 7.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 554 HDLQSELDKGKEDTQKKIHKFE-EALKEKEEQLTRVTEVQRLQAQQADAALGEFKRQVEL--NSEKVYAEMKEQMEKVEA 630
Cdd:pfam17380 276 HIVQHQKAVSERQQQEKFEKMEqERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIyaEQERMAMERERELERIRQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 631 DlTRSKSLREKQSKEFLWQLEDIRQryeqqIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHEN 710
Cdd:pfam17380 356 E-ERKRELERIRQEEIAMEISRMRE-----LERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 711 QiqEFKKRDAQVIADMEA-QVHKLREElinvNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHA 789
Cdd:pfam17380 430 E--EARQREVRRLEEERArEMERVRLE----EQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEE 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 790 AETEMTLEKANSKLKQIEKEYTQKlakssqIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLirdndqaik 869
Cdd:pfam17380 504 RKQAMIEEERKRKLLEKEMEERQK------AIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRL--------- 568
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 194386662 870 vlqDELENRSNQVR-CAEKKLQHKELESQEQMTYIRQEYETKLKGLMP 916
Cdd:pfam17380 569 ---EAMEREREMMRqIVESEKARAEYEATTPITTIKPIYRPRISEYQP 613
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
269-636 |
1.04e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 1.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 269 HEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKL---EKKVQTLIRDCQVIRETKEDQIAELKKICE 345
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIsalRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 346 QSTEslNNDWEKKLHNAVAEMEQEKFDLQKQhTENIQELLEDTNVRLNKMESEYmaqtQSTNHMIKELEARVQQLTGEAE 425
Cdd:TIGR02168 762 EIEE--LEERLEEAEEELAEAEAEIEELEAQ-IEQLKEELKALREALDELRAEL----TLLNEEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 426 NSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDY---EQNMKLLQTKYDadinllkqehalsasKA 502
Cdd:TIGR02168 835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERaslEEALALLRSELE---------------EL 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 503 SSMIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHIYEEKAHDLQSELDKGKEDTQKKIHKFEEALKEKE 582
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELR-EKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 194386662 583 EQLTRVTEVQRlqaqqadAALGEFKRQvelnsEKVYAEMKEQMEkveaDLTRSK 636
Cdd:TIGR02168 979 NKIKELGPVNL-------AAIEEYEEL-----KERYDFLTAQKE----DLTEAK 1016
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
524-910 |
1.24e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 524 ELQRKQQLRDQENKFQMEKSHLKHIYEEKAhdlqSELDKGKEDTQKKihkfEEALKEKEEQLTRVTEVQRLQAQQADAAL 603
Cdd:PTZ00121 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKA----DEAKKKAEEAKKK----ADAAKKKAEEAKKAAEAAKAEAEAAADEA 1359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 604 GEFKRQVELnsekvyAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEqqivELKLEHEQEKthllqqhNAEK 683
Cdd:PTZ00121 1360 EAAEEKAEA------AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD----ELKKAAAAKK-------KADE 1422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 684 DSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQlvELGLLREEEKQRAT 763
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEAKKKAD 1500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 764 REHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE 843
Cdd:PTZ00121 1501 EAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL 1580
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 194386662 844 RRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQMTYIRQEYETK 910
Cdd:PTZ00121 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
287-954 |
1.57e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 1.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 287 LERKNNEIEELKTLYRSKQhETEETIRKLEKKvqTLIRDcqviRETKEDQIAELKKICEQSTESLNnDWEKKLHNAVAEM 366
Cdd:TIGR02169 203 LRREREKAERYQALLKEKR-EYEGYELLKEKE--ALERQ----KEAIERQLASLEEELEKLTEEIS-ELEKRLEEIEQLL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 367 EQEkfdlqkqhTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERcyq 446
Cdd:TIGR02169 275 EEL--------NKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELER--- 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 447 itcsELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyDADINLLKQEHALSASKASSMIEELEQNVCQLKQqLQESELQ 526
Cdd:TIGR02169 344 ----EIEEERKRRDKLTEEYAELKEELEDLRAELEEV-DKEFAETRDELKDYREKLEKLKREINELKRELDR-LQEELQR 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 527 RKQQLRDQENKfqmekshLKHIYEEKAhdlqsELDKGKEDTQKKIHKFEEALKEKEEQLTrvTEVQRLQAQQADAALGEf 606
Cdd:TIGR02169 418 LSEELADLNAA-------IAGIEAKIN-----ELEEEKEDKALEIKKQEWKLEQLAADLS--KYEQELYDLKEEYDRVE- 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 607 KRQVELNSEkvYAEMKEQMEKVEADLTRSKSLREKQSKEF------LWQLEDIRQRYE-----------QQIVELKLEHE 669
Cdd:TIGR02169 483 KELSKLQRE--LAEAEAQARASEERVRGGRAVEEVLKASIqgvhgtVAQLGSVGERYAtaievaagnrlNNVVVEDDAVA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 670 QEKTHLLQQHNAEKDSL-----VRDHEREIENLEKQLR---AANM-EHENQIQE---FKKRDAQVIADMEA---QVHKLR 734
Cdd:TIGR02169 561 KEAIELLKRRKAGRATFlplnkMRDERRDLSILSEDGVigfAVDLvEFDPKYEPafkYVFGDTLVVEDIEAarrLMGKYR 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 735 EELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELK---------KTHAAETEMTLEKANSKLKQ 805
Cdd:TIGR02169 641 MVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSslqselrriENRLDELSQELSDASRKIGE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 806 IEKEYT---QKLAKSSQIIAELQTTISSLKEE---NSQQQLAAERRLQDVRQKFEDEKKQL----IRDNDQAIKVLQDEL 875
Cdd:TIGR02169 721 IEKEIEqleQEEEKLKERLEELEEDLSSLEQEienVKSELKELEARIEELEEDLHKLEEALndleARLSHSRIPEIQAEL 800
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 194386662 876 ENRSNQVRCAEKKLQHKELESQEqMTYIRQEYETKLKGLMpaSLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGR 954
Cdd:TIGR02169 801 SKLEEEVSRIEARLREIEQKLNR-LTLEKEYLEKEIQELQ--EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAA 876
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
238-912 |
1.72e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 1.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 238 RKSSSFHDDHFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKtlyRSKQHETEETIRKLEK 317
Cdd:PTZ00121 1062 AKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKK---KAEDARKAEEARKAED 1138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 318 kvqtlIRDCQVIRETKEDQIAELKKICEQS---TESLNNDWEKKLHNAVAEMEQEKFDLQKQHTE--NIQELLEDTNVR- 391
Cdd:PTZ00121 1139 -----ARKAEEARKAEDAKRVEIARKAEDArkaEEARKAEDAKKAEAARKAEEVRKAEELRKAEDarKAEAARKAEEERk 1213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 392 ---LNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDH 468
Cdd:PTZ00121 1214 aeeARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD 1293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 469 LVNDYEQNMKLLQTKYdadinllKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKhi 548
Cdd:PTZ00121 1294 EAKKAEEKKKADEAKK-------KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE-- 1364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 549 yEEKAHDLQSELDKGKEDTQKK----IHKFEEALKEKEEQLTRVTEVQRLQAQQADAAlgEFKRQVElNSEKVYAEMKEQ 624
Cdd:PTZ00121 1365 -KAEAAEKKKEEAKKKADAAKKkaeeKKKADEAKKKAEEDKKKADELKKAAAAKKKAD--EAKKKAE-EKKKADEAKKKA 1440
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 625 MEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQivelKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAA 704
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK----KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 705 NMEHENQIQEFKKRDAQVIAD--MEAQVHKLREELINVNSQRKQQLVElgllREEEKQR-------ATREHEIV--VNKL 773
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEEAKKADeaKKAEEKKKADELKKAEELKKAEEKK----KAEEAKKaeedknmALRKAEEAkkAEEA 1592
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 774 KAESEKMKIELKKTHAAETEMTLEKANSKLKQIEK--EYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE-------- 843
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAeeakkaee 1672
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 844 --RRLQDVRQKFEDEKK---QLIRDNDQAIKVLQ-----DELENRSNQVRCAE-------KKLQHKELESQEQMTYIRQE 906
Cdd:PTZ00121 1673 dkKKAEEAKKAEEDEKKaaeALKKEAEEAKKAEElkkkeAEEKKKAEELKKAEeenkikaEEAKKEAEEDKKKAEEAKKD 1752
|
....*.
gi 194386662 907 YETKLK 912
Cdd:PTZ00121 1753 EEEKKK 1758
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
247-908 |
2.25e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.90 E-value: 2.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 247 HFLSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDC 326
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 327 QVIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKFD---LQKQHTENIQELLEDTNVRLNKMESEYMAQT 403
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEeleKLQEKLEQLEEELLAKKKLESERLSSAAKLK 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 404 QSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITcSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTK 483
Cdd:pfam02463 394 EEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEES-IELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 484 YDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEEKAHDLQSELDKG 563
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVE 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 564 KEDTQKKIHKFEEALKEKEEQL----TRVTEVQRLQAQQADAALGEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLR 639
Cdd:pfam02463 553 VSATADEVEERQKLVRALTELPlgarKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDT 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 640 EKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRD 719
Cdd:pfam02463 633 ELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEEL 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 720 AQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKA 799
Cdd:pfam02463 713 KKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK 792
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 800 NSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRS 879
Cdd:pfam02463 793 EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQEL 872
|
650 660
....*....|....*....|....*....
gi 194386662 880 NQVRCAEKKLQHKELESQEQMTYIRQEYE 908
Cdd:pfam02463 873 LLKEEELEEQKLKDELESKEEKEKEEKKE 901
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
254-855 |
3.07e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.12 E-value: 3.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 254 EKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHET------EETIRKLEKKVQTLIRDCQ 327
Cdd:TIGR00618 276 EAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRaahvkqQSSIEEQRRLLQTLHSQEI 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 328 VIRETKEDQIAELKKICEQSTEslnndwekkLHNAVAEMEQEKFDLQK-QHTENIQELLEDTNVRLNKMESEYMAQTQST 406
Cdd:TIGR00618 356 HIRDAHEVATSIREISCQQHTL---------TQHIHTLQQQKTTLTQKlQSLCKELDILQREQATIDTRTSAFRDLQGQL 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 407 NHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTL--HKEKDHLVNDYEQNMKLLQTKY 484
Cdd:TIGR00618 427 AHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHlqETRKKAVVLARLLELQEEPCPL 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 485 DADINLLKQE--HALSASKASSMIEELEQNVCQLKQQLQE------SELQRKQQLRDQENKFQMEKSHLKHIYEEKAHDL 556
Cdd:TIGR00618 507 CGSCIHPNPArqDIDNPGPLTRRMQRGEQTYAQLETSEEDvyhqltSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDI 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 557 QSeLDKGKEDTQKKIHKFEEALKEKEEQLTRvtEVQRLQAQQADAALGEFKRQVELNSEKVYAEMKEQMEKVEADLTRSK 636
Cdd:TIGR00618 587 PN-LQNITVRLQDLTEKLSEAEDMLACEQHA--LLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREH 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 637 SLREKQSKEFLWQledIRQRYEQqivelKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFK 716
Cdd:TIGR00618 664 ALSIRVLPKELLA---SRQLALQ-----KMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLA 735
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 717 KRD---AQVIADMEAQVHKLREELINVNSQRKQQL-VELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAET 792
Cdd:TIGR00618 736 AREdalNQSLKELMHQARTVLKARTEAHFNNNEEVtAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSD 815
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 194386662 793 EMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLkEENSQQQLAAERRLQDVRQKFED 855
Cdd:TIGR00618 816 EDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKY-EECSKQLAQLTQEQAKIIQLSDK 877
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
501-864 |
5.15e-06 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 50.22 E-value: 5.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 501 KASSMIEELEQNVCQLKQQLQESeLQRKQQLRDQENKFQMEKSHLKHIYEEkahdLQSELDKGKedtqkkiHKFEEALKE 580
Cdd:PRK04778 102 KAKHEINEIESLLDLIEEDIEQI-LEELQELLESEEKNREEVEQLKDLYRE----LRKSLLANR-------FSFGPALDE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 581 KEEQLTRVTEvqrlqaqqadaalgEFKRQVELNSE-------KVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDI 653
Cdd:PRK04778 170 LEKQLENLEE--------------EFSQFVELTESgdyvearEILDQLEEELAALEQIMEEIPELLKELQTELPDQLQEL 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 654 RQRYEQQIVE-LKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAAN---------MEHE----NQIQEFKKRD 719
Cdd:PRK04778 236 KAGYRELVEEgYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQeridqlydiLEREvkarKYVEKNSDTL 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 720 AQVIADMEAQVHKLREELinvnsqrkQQLVELGLLREEEKQRAtREHEIVVNKLKAESEKMKIELKKTHAA--ETEMTLE 797
Cdd:PRK04778 316 PDFLEHAKEQNKELKEEI--------DRVKQSYTLNESELESV-RQLEKQLESLEKQYDEITERIAEQEIAysELQEELE 386
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 194386662 798 KANSKLKQIEKEytqklakssqiIAELQTTISSLKEEnsqqQLAAERRLQDVRQKFEDEKKQLIRDN 864
Cdd:PRK04778 387 EILKQLEEIEKE-----------QEKLSEMLQGLRKD----ELEAREKLERYRNKLHEIKRYLEKSN 438
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
239-947 |
5.74e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.49 E-value: 5.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 239 KSSSFHDDHFLSRIREKELDMKTKMMEAKFH-EEKLKLQQKHDADVQKILERKNNEIEELktlyrskQHETEETIRKLEK 317
Cdd:pfam05483 66 KDSDFENSEGLSRLYSKLYKEAEKIKKWKVSiEAELKQKENKLQENRKIIEAQRKAIQEL-------QFENEKVSLKLEE 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 318 KVQT---LIRDCQVIRETkedqIAELKKICEQSTESlnndwEKKLHNAVAEMEQEKFDLQkQHTENIQELLEDTNVRLNK 394
Cdd:pfam05483 139 EIQEnkdLIKENNATRHL----CNLLKETCARSAEK-----TKKYEYEREETRQVYMDLN-NNIEKMILAFEELRVQAEN 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 395 MESEYMAQTQSTNHMIKELEARVQQLTGEAENsnlQRQKLIQEKAELERCYQITCSELQEVKARRNTLhKEKDHLVNDYE 474
Cdd:pfam05483 209 ARLEMHFKLKEDHEKIQHLEEEYKKEINDKEK---QVSLLLIQITEKENKMKDLTFLLEESRDKANQL-EEKTKLQDENL 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 475 QNMKLLQTKYDADINLLKQEHALSASKASSMIEELE---QNVCQLKQQlQESELQRKQQLRDQENKFQMEKSHLKHIYEE 551
Cdd:pfam05483 285 KELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQiatKTICQLTEE-KEAQMEELNKAKAAHSFVVTEFEATTCSLEE 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 552 KAHDLQSELDKGKEdtQKKIHKFEEALKEKE-EQLTRVTEVQRLQAQQADAALGEfkRQVELNSEKVYAEMKEQMEKVEA 630
Cdd:pfam05483 364 LLRTEQQRLEKNED--QLKIITMELQKKSSElEEMTKFKNNKEVELEELKKILAE--DEKLLDEKKQFEKIAEELKGKEQ 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 631 DLTRSKSLREKQSKEFLWQLEDIR---QRYEQQIVELKLEHEQEKthllqqhnaekdslvrdhereIENLEKQLRAANME 707
Cdd:pfam05483 440 ELIFLLQAREKEIHDLEIQLTAIKtseEHYLKEVEDLKTELEKEK---------------------LKNIELTAHCDKLL 498
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 708 HENqiqefkKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQrATREHEIVVNKLKAESEKMKIELKKT 787
Cdd:pfam05483 499 LEN------KELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMN-LRDELESVREEFIQKGDEVKCKLDKS 571
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 788 --HAAETEMTLEKANSKLKQIEKE---YTQKLAKSSQIIAELQTTISSLKEENS--QQQLAA--------ERRLQDVRQK 852
Cdd:pfam05483 572 eeNARSIEYEVLKKEKQMKILENKcnnLKKQIENKNKNIEELHQENKALKKKGSaeNKQLNAyeikvnklELELASAKQK 651
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 853 FE---DEKKQLIRDNDQAIKVLQDELENRSNQVRCA-------EKKLQHKELESQEQMTYIRQEYET------------K 910
Cdd:pfam05483 652 FEeiiDNYQKEIEDKKISEEKLLEEVEKAKAIADEAvklqkeiDKRCQHKIAEMVALMEKHKHQYDKiieerdselglyK 731
|
730 740 750
....*....|....*....|....*....|....*..
gi 194386662 911 LKGLMPASLRQELEDTISSLKSQVNFLQKRASILQEE 947
Cdd:pfam05483 732 NKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEE 768
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
409-948 |
7.30e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 49.90 E-value: 7.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 409 MIKELEARVQQ---LTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyd 485
Cdd:PRK01156 174 VIDMLRAEISNidyLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMK-- 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 486 adiNLLKQEHALSASKAsSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHiYEEKAHDLQSELDKGKE 565
Cdd:PRK01156 252 ---NRYESEIKTAESDL-SMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIEN-KKQILSNIDAEINKYHA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 566 DtqkkIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALGEFKRQVELNSekvYAEMKEQMEKVEADLTRSKSLREKQSKE 645
Cdd:PRK01156 327 I----IKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKS---IESLKKKIEEYSKNIERMSAFISEILKI 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 646 FLWQLEDIRQRYEQQIVELkleheQEKTHLLQQHNAEKDSLvRDHEREIENLEKQLRAANM-------EHENQIQEFKKR 718
Cdd:PRK01156 400 QEIDPDAIKKELNEINVKL-----QDISSKVSSLNQRIRAL-RENLDELSRNMEMLNGQSVcpvcgttLGEEKSNHIINH 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 719 DAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIvVNKLKAESEKMKI---ELKKTHAAETEMT 795
Cdd:PRK01156 474 YNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNK-IESARADLEDIKIkinELKDKHDKYEEIK 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 796 LEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQlirdNDQAIKVLQDEL 875
Cdd:PRK01156 553 NRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSY----IDKSIREIENEA 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 876 ENRSNQVRCA-EKKLQHKELE------------------SQEQMTYIRQEYETKLKGLMPA-----SLRQELEDTISSLK 931
Cdd:PRK01156 629 NNLNNKYNEIqENKILIEKLRgkidnykkqiaeidsiipDLKEITSRINDIEDNLKKSRKAlddakANRARLESTIEILR 708
|
570
....*....|....*..
gi 194386662 932 SQVNFLQKRASILQEEL 948
Cdd:PRK01156 709 TRINELSDRINDINETL 725
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
579-799 |
7.46e-06 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 49.83 E-value: 7.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 579 KEKEEQLTRVTEVQRLQAQQADAALGEFKRQVElnseKVYAEMKEQMEKVEAdltRSKSLREKQskeflwqlediRQRYE 658
Cdd:PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEAE----KLKEELEEKKEKLQE---EEDKLLEEA-----------EKEAQ 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 659 QQIVELKLEHEQEKTHLLQQHNAEKDSLVrdhEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLRE--E 736
Cdd:PRK00409 577 QAIKEAKKEADEIIKELRQLQKGGYASVK---AHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQkgE 653
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 194386662 737 LINVNSQRKQQL--------VELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKA 799
Cdd:PRK00409 654 VLSIPDDKEAIVqagimkmkVPLSDLEKIQKPKKKKKKKPKTVKPKPRTVSLELDLRGMRYEEALERLDKY 724
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
620-834 |
8.65e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 8.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 620 EMKEQMEKVEAdlTRSKSLREKQSKEFLWQLEDIRQRYEQQIVE----------LKLEHEQEKTHLLQQHNAEKDSLVRD 689
Cdd:COG4913 229 ALVEHFDDLER--AHEALEDAREQIELLEPIRELAERYAAARERlaeleylraaLRLWFAQRRLELLEAELEELRAELAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 690 HEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQ---QLVELGLLREEEKQRATREH 766
Cdd:COG4913 307 LEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARleaLLAALGLPLPASAEEFAALR 386
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 767 EivvnKLKAESEKMKIELKKTHAAETEM--TLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEE 834
Cdd:COG4913 387 A----EAAALLEALEEELEALEEALAEAeaALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
365-908 |
1.00e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.79 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 365 EMEQEKFDLQKqhtenIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARvQQLTGEAENsnlQRQKLIQEKAELERC 444
Cdd:pfam01576 6 EMQAKEEELQK-----VKERQQKAESELKELEKKHQQLCEEKNALQEQLQAE-TELCAEAEE---MRARLAARKQELEEI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 445 YQITCSELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKYDADiNLLKQEHALSASKASSMIEELEQNVCQLKQQLQESE 524
Cdd:pfam01576 77 LHELESRLEEEEERSQQLQNEKKKM----QQHIQDLEEQLDEE-EAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 525 LQRKQ----------QLRDQENKFQMeKSHLKHIYEEKAHDLQSEL---DKGKEDTQKKIHKFEEALKEKEEQLTRvtev 591
Cdd:pfam01576 152 KERKLleeriseftsNLAEEEEKAKS-LSKLKNKHEAMISDLEERLkkeEKGRQELEKAKRKLEGESTDLQEQIAE---- 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 592 qrLQAQQADAALGEFKRQVELNSEKVYAEmKEQMEKVEAdltrSKSLREKQS-----KEFLWQLEDIRQRYEQQIVELKL 666
Cdd:pfam01576 227 --LQAQIAELRAQLAKKEEELQAALARLE-EETAQKNNA----LKKIRELEAqiselQEDLESERAARNKAEKQRRDLGE 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 667 EHEQEKTHLL--QQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVN--- 741
Cdd:pfam01576 300 ELEALKTELEdtLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEkak 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 742 ----SQRKQQLVELGLL--REEEKQRATREHEIVVNKLKA---ESEKMKIEL-KKTHAAETEM-----TLEKANSKLKQI 806
Cdd:pfam01576 380 qaleSENAELQAELRTLqqAKQDSEHKRKKLEGQLQELQArlsESERQRAELaEKLSKLQSELesvssLLNEAEGKNIKL 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 807 EKEYT------------------QKLAKSSQI--IAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDN-- 864
Cdd:pfam01576 460 SKDVSslesqlqdtqellqeetrQKLNLSTRLrqLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAgt 539
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 194386662 865 ----DQAIKVLQDELENRSNQVrcAEKKLQHKELESQEqmTYIRQEYE 908
Cdd:pfam01576 540 lealEEGKKRLQRELEALTQQL--EEKAAAYDKLEKTK--NRLQQELD 583
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
436-786 |
1.69e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 436 QEKAELERCYQitcsELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKydadinllkqehalsASKASSMIEELEQNVCQ 515
Cdd:TIGR02169 671 SEPAELQRLRE----RLEGLKRELSSLQSELRRI----ENRLDELSQE---------------LSDASRKIGEIEKEIEQ 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 516 LKQQlQESELQRKQQLRDQENKFQMEKSHLKhiyeekahDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRvTEVQRLQ 595
Cdd:TIGR02169 728 LEQE-EEKLKERLEELEEDLSSLEQEIENVK--------SELKELEARIEELEEDLHKLEEALNDLEARLSH-SRIPEIQ 797
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 596 AQQADAalgefkrqvelnsEKVYAEMKEQMEKVEADLTRSKSLREkqskeflwQLEDIRQRYEQQIVELKL--EHEQEKT 673
Cdd:TIGR02169 798 AELSKL-------------EEEVSRIEARLREIEQKLNRLTLEKE--------YLEKEIQELQEQRIDLKEqiKSIEKEI 856
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 674 HLLQQHNAEKDSLVRDHEREIENLEKQ---LRAANMEHENQIQEFKKRdaqvIADMEAQVHKLREELINVNSQR---KQQ 747
Cdd:TIGR02169 857 ENLNGKKEELEEELEELEAALRDLESRlgdLKKERDELEAQLRELERK----IEELEAQIEKKRKRLSELKAKLealEEE 932
|
330 340 350
....*....|....*....|....*....|....*....
gi 194386662 748 LVELGLLREEEKQRAtrEHEIVVNKLKAESEKMKIELKK 786
Cdd:TIGR02169 933 LSEIEDPKGEDEEIP--EEELSLEDVQAELQRVEEEIRA 969
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
340-927 |
2.20e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.43 E-value: 2.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 340 LKKICEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEaRVQQ 419
Cdd:TIGR00618 158 LKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLR-EALQ 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 420 LTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQE-HALS 498
Cdd:TIGR00618 237 QTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRiHTEL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 499 ASKASSMIEELEQNVCQLKQQLQESELQR-KQQLRDQENKFQMEKSHLKHIYEEKA---------HDLQSELDKGKEDTQ 568
Cdd:TIGR00618 317 QSKMRSRAKLLMKRAAHVKQQSSIEEQRRlLQTLHSQEIHIRDAHEVATSIREISCqqhtltqhiHTLQQQKTTLTQKLQ 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 569 KKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALGEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLW 648
Cdd:TIGR00618 397 SLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQ 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 649 QLEDIRQRYEqqivELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEhenQIQEFKKRDAQVIADMEA 728
Cdd:TIGR00618 477 TKEQIHLQET----RKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQ---RGEQTYAQLETSEEDVYH 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 729 QVHKLREELINVNSQRK---QQLVELGLLREEEKQRA---TREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSK 802
Cdd:TIGR00618 550 QLTSERKQRASLKEQMQeiqQSFSILTQCDNRSKEDIpnlQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQD 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 803 LKQIEKEYTQKLAKSSQIIAELQTT------------ISSLKEENSQQQLAAERRLQDVRQKFEDEKKQL------IRDN 864
Cdd:TIGR00618 630 VRLHLQQCSQELALKLTALHALQLTltqervrehalsIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLaqcqtlLREL 709
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 194386662 865 DQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQMTYIRQEYETKLKGLMPASLRQELEDTI 927
Cdd:TIGR00618 710 ETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTA 772
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
724-954 |
2.32e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 2.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 724 ADMEAQVHKLREELiNVNSQRKQQLVELGLlREEEKQRATReheiVVNKLKAESEKMKIELKKTHAAET----EMTLEKA 799
Cdd:COG3206 114 ASREAAIERLRKNL-TVEPVKGSNVIEISY-TSPDPELAAA----VANALAEAYLEQNLELRREEARKAleflEEQLPEL 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 800 NSKLKQIEKEYTQKLAKSSQIIAELQTTISSLK-EENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQD-ELEN 877
Cdd:COG3206 188 RKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQlSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpVIQQ 267
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 194386662 878 RSNQVRCAEKKLQhkELESQEQMTYIR-QEYETKLKGLMpASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGR 954
Cdd:COG3206 268 LRAQLAELEAELA--ELSARYTPNHPDvIALRAQIAALR-AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR 342
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
496-725 |
5.52e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 5.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 496 ALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHI--YEEKAHDLQSELDKGKE---DTQKK 570
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIaaLARRIRALEQELAALEAelaELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 571 IHKFEEALKEKEEQL-TRVTEVQRLQAQQADAAL------GEFKRQVELnSEKVYAEMKEQMEKVEADLTRSKSLREKQS 643
Cdd:COG4942 92 IAELRAELEAQKEELaELLRALYRLGRQPPLALLlspedfLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 644 KEfLWQLEDIRQRYEQQIVELKLEhEQEKTHLLQQHNAEKDSLvrdhEREIENLEKQLRAANMEHENQIQEFKKRDAQVI 723
Cdd:COG4942 171 AE-RAELEALLAELEEERAALEAL-KAERQKLLARLEKELAEL----AAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
..
gi 194386662 724 AD 725
Cdd:COG4942 245 AA 246
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
619-947 |
5.60e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 5.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 619 AEMKEQMEKVEADLTRSkslrEKQSKEFLWQLEDIRQRYEqqivelKLEHEQEKTHLLQQHNAEKDSL--------VRDH 690
Cdd:TIGR02169 166 AEFDRKKEKALEELEEV----EENIERLDLIIDEKRQQLE------RLRREREKAERYQALLKEKREYegyellkeKEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 691 EREIENLEKQLRAANMEHEN---QIQEFKKRDA---QVIADMEAQVHKL-REELINVNSQRKQQLVELGLLR--EEEKQR 761
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKlteEISELEKRLEeieQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLErsIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 762 ATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKAnsKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLA 841
Cdd:TIGR02169 316 ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD--KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 842 AE-------------RRLQDVRQKFEDEKKQL---IRDNDQAIKVLQDELENRSNQVRCAEKKLQhkelESQEQMTYIRQ 905
Cdd:TIGR02169 394 LEklkreinelkrelDRLQEELQRLSEELADLnaaIAGIEAKINELEEEKEDKALEIKKQEWKLE----QLAADLSKYEQ 469
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 194386662 906 EYETKLKGLmpaslrQELEDTISSLKSQVNFLQKRASILQEE 947
Cdd:TIGR02169 470 ELYDLKEEY------DRVEKELSKLQRELAEAEAQARASEER 505
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
517-671 |
6.64e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.69 E-value: 6.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 517 KQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEEKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQA 596
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKRE 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 194386662 597 QQADAALGEFKRQvELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLwqLEDIRQRYEQQIVELKLEHEQE 671
Cdd:PRK12704 110 EELEKKEKELEQK-QQELEKKEEELEELIEEQLQELERISGLTAEEAKEIL--LEKVEEEARHEAAVLIKEIEEE 181
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
501-641 |
1.13e-04 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 45.97 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 501 KASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQ-MEKSHLKhiYEEKAHDLQSELDKGKEDTQKKIHK-FEEAL 578
Cdd:PRK00409 506 EAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKeAEKLKEE--LEEKKEKLQEEEDKLLEEAEKEAQQaIKEAK 583
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 194386662 579 KEKEEQLTRVTEVQRLQ-----AQQADAALGEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREK 641
Cdd:PRK00409 584 KEADEIIKELRQLQKGGyasvkAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQK 651
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
389-847 |
1.19e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.10 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 389 NVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEA--ENSNlQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEK 466
Cdd:COG3096 237 ALRENRMTLEAIRVTQSDRDLFKHLITEATNYVAADymRHAN-ERRELSERALELRRELFGARRQLAEEQYRLVEMAREL 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 467 DHLvndyEQNMKLLQTKYDAD---INLLkqehaLSASKASSMIEELEQNVCQLKQQLQESELQRKqqlrdqenkfqmEKS 543
Cdd:COG3096 316 EEL----SARESDLEQDYQAAsdhLNLV-----QTALRQQEKIERYQEDLEELTERLEEQEEVVE------------EAA 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 544 HLKHIYEEKAHDLQSELDKGKedTQkkIHKFEEALkekEEQLTRVtevqrLQAQQADAALGEFKRQVEL------NSEKV 617
Cdd:COG3096 375 EQLAEAEARLEAAEEEVDSLK--SQ--LADYQQAL---DVQQTRA-----IQYQQAVQALEKARALCGLpdltpeNAEDY 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 618 YAEMKEQMEKVEADLtrsKSLREKQSKEflwqlEDIRQRYEQ--QIVELKLEH-----------EQEKTHLLQQHNAEKD 684
Cdd:COG3096 443 LAAFRAKEQQATEEV---LELEQKLSVA-----DAARRQFEKayELVCKIAGEversqawqtarELLRRYRSQQALAQRL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 685 SLVRDHEREIENLEKQLRAAnmehENQIQEFKKRDAQVIADmeaqvhklREELINVNSQRKQQLVELG-LLREEEKQRAT 763
Cdd:COG3096 515 QQLRAQLAELEQRLRQQQNA----ERLLEEFCQRIGQQLDA--------AEELEELLAELEAQLEELEeQAAEAVEQRSE 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 764 REHEivvnkLKAESEKMKiELKKTHAAetemtLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE 843
Cdd:COG3096 583 LRQQ-----LEQLRARIK-ELAARAPA-----WLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAA 651
|
....
gi 194386662 844 RRLQ 847
Cdd:COG3096 652 RKQA 655
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
649-861 |
1.65e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 649 QLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKD-----SLVRDHEREIENLEKQLRAANMEH---ENQIQEFKKRDA 720
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRiaalaRRIRALEQELAALEAELAELEKEIaelRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 721 QVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKAN 800
Cdd:COG4942 108 ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEER 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 194386662 801 SKLKQIEKEYTQKLAKSS-------QIIAELQTTISSLKEE-NSQQQLAAERRLQDVRQKFEDEKKQLI 861
Cdd:COG4942 188 AALEALKAERQKLLARLEkelaelaAELAELQQEAEELEALiARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
472-760 |
2.02e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 45.33 E-value: 2.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 472 DYEQNMKLLQTKYDADINLLKQEHALSASKASS---MIEELEQN-------VCQLKQQLQESELQRKQQLRDQENKFQME 541
Cdd:COG5185 240 DPESELEDLAQTSDKLEKLVEQNTDLRLEKLGEnaeSSKRLNENannlikqFENTKEKIAEYTKSIDIKKATESLEEQLA 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 542 KSHLKHIYEEKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLqaQQADAALGEFKRQVELNSEKVYAEM 621
Cdd:COG5185 320 AAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVEL--SKSSEELDSFKDTIESTKESLDEIP 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 622 KEQMEK---VEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIvELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIEN-L 697
Cdd:COG5185 398 QNQRGYaqeILATLEDTLKAADRQIEELQRQIEQATSSNEEVS-KLLNELISELNKVMREADEESQSRLEEAYDEINRsV 476
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 194386662 698 EKQLRAANMEH---ENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQ 760
Cdd:COG5185 477 RSKKEDLNEELtqiESRVSTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARGYAHILALE 542
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
359-944 |
2.40e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 45.20 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 359 LHNAVAEMEQeKFDLQKQ----HTENIQELLEdtNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKL 434
Cdd:pfam10174 135 LRKTLEEMEL-RIETQKQtlgaRDESIKKLLE--MLQSKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHL 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 435 iqeKAELERCYQITcSELQEVKARRnTLHKEKDHLVNDYEQNMKLLQTkydaDINLLKQEHALSASKASSMIEELE---- 510
Cdd:pfam10174 212 ---REELHRRNQLQ-PDPAKTKALQ-TVIEMKDTKISSLERNIRDLED----EVQMLKTNGLLHTEDREEEIKQMEvyks 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 511 ------QNVCQLKQQLQ--ESELQRKQ-QLRDQENKFQMEKSHLKHIYE------EKAHDLQSELDKGKEDTQKKihkfE 575
Cdd:pfam10174 283 hskfmkNKIDQLKQELSkkESELLALQtKLETLTNQNSDCKQHIEVLKEsltakeQRAAILQTEVDALRLRLEEK----E 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 576 EALKEKEEQLTRVTEVQRLQAqqadAALGEFKRQVELNSEKVYAEMKeqmeKVEadlTRSKSLREKQSkeflwQLEDIRQ 655
Cdd:pfam10174 359 SFLNKKTKQLQDLTEEKSTLA----GEIRDLKDMLDVKERKINVLQK----KIE---NLQEQLRDKDK-----QLAGLKE 422
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 656 RyeqqIVELKLEHEQEKTHL--LQQHNAEKDSLVR--DHEREIENLEKQLRAANMEHENQIQEFKKRDAQV-IADMEAQV 730
Cdd:pfam10174 423 R----VKSLQTDSSNTDTALttLEEALSEKERIIErlKEQREREDRERLEELESLKKENKDLKEKVSALQPeLTEKESSL 498
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 731 HKLREELINVNSqrkqqlvelgllREEEKQRATREHEIVVNKLKAESEKMKIELKKTH-AAETEMTLEKANSKLKQIEKE 809
Cdd:pfam10174 499 IDLKEHASSLAS------------SGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHnAEEAVRTNPEINDRIRLLEQE 566
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 810 YTQKLAKSSQIIAELQTTISSLKEensqqqlaAERRLQDVRQKFED-EKKQLIRDNDQAIKVLQdeleNRSNQVRCAEKK 888
Cdd:pfam10174 567 VARYKEESGKAQAEVERLLGILRE--------VENEKNDKDKKIAElESLTLRQMKEQNKKVAN----IKHGQQEMKKKG 634
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 194386662 889 LQHKELESQEQMTYIRQEYETKLKGLMPA--SLRQELEDTISSLKSQVNFLQKRASIL 944
Cdd:pfam10174 635 AQLLEEARRREDNLADNSQQLQLEELMGAleKTRQELDATKARLSSTQQSLAEKDGHL 692
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
278-760 |
2.91e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 2.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 278 KHDADVQKILERKNNEIEELKTLYrskqhetEETIRKLEKKVQTLIRDCQVIReTKEDQIAELKKICEQSTESLNNDWEK 357
Cdd:pfam15921 317 RQLSDLESTVSQLRSELREAKRMY-------EDKIEELEKQLVLANSELTEAR-TERDQFSQESGNLDDQLQKLLADLHK 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 358 KLHNAVAEMEQEK--FDLQKQHTENIQEL---LEDTNVRLNKME-------------------------------SEYMA 401
Cdd:pfam15921 389 REKELSLEKEQNKrlWDRDTGNSITIDHLrreLDDRNMEVQRLEallkamksecqgqmerqmaaiqgkneslekvSSLTA 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 402 QTQSTNHMIKELearVQQLTGEA---ENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDyEQNMK 478
Cdd:pfam15921 469 QLESTKEMLRKV---VEELTAKKmtlESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE-GDHLR 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 479 LLQTKYDAdinlLKqehaLSASKASSMIEELEQNVcqlkqqlqESELQRKQQLRDQENKFQMEKSHLKHIYEEKAHDLQs 558
Cdd:pfam15921 545 NVQTECEA----LK----LQMAEKDKVIEILRQQI--------ENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQ- 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 559 ELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEV--QRLQA-----QQADAALGEFKR-QVELNSekvyaeMKEQMEKVEA 630
Cdd:pfam15921 608 EFKILKDKKDAKIRELEARVSDLELEKVKLVNAgsERLRAvkdikQERDQLLNEVKTsRNELNS------LSEDYEVLKR 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 631 DLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLE-----HEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAAN 705
Cdd:pfam15921 682 NFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMegsdgHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNAN 761
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 194386662 706 MEhenqiQEFKKRDAqviadmeaqvHKLREELINVNSQRKQQLVELGLLREEEKQ 760
Cdd:pfam15921 762 KE-----KHFLKEEK----------NKLSQELSTVATEKNKMAGELEVLRSQERR 801
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
599-911 |
4.26e-04 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 44.23 E-value: 4.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 599 ADAALGEFKRQVELNSEKVYAEMKEQMEKVeadltrskslREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKT----- 673
Cdd:NF033838 52 GNESQKEHAKEVESHLEKILSEIQKSLDKR----------KHTQNVALNKKLSDIKTEYLYELNVLKEKSEAELTsktkk 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 674 ------HLLQQHNAEKDSLVRDHEREIENLEKQLRAANME-HENQIQEFKKRDAQVIADMEAQVHKLREELINVN---SQ 743
Cdd:NF033838 122 eldaafEQFKKDTLEPGKKVAEATKKVEEAEKKAKDQKEEdRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEakePR 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 744 RKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEK----------EYTQK 813
Cdd:NF033838 202 DEEKIKQAKAKVESKKAEATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKrgvlgepatpDKKEN 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 814 LAKSSQIIAELQTTIS-SLKEEnsQQQLAAERRLQDVRQKFEDEKKQLIRD-NDQAIKVLQDELENRSNQVRCAEKKL-- 889
Cdd:NF033838 282 DAKSSDSSVGEETLPSpSLKPE--KKVAEAEKKVEEAKKKAKDQKEEDRRNyPTNTYKTLELEIAESDVKVKEAELELvk 359
|
330 340
....*....|....*....|...
gi 194386662 890 -QHKELESQEQMTYIRQEYETKL 911
Cdd:NF033838 360 eEAKEPRNEEKIKQAKAKVESKK 382
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
620-949 |
4.39e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 44.18 E-value: 4.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 620 EMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLL-QQHNAEKDSLVRDHEREIENLE 698
Cdd:COG5185 180 EIFGLTLGLLKGISELKKAEPSGTVNSIKESETGNLGSESTLLEKAKEIINIEEALKgFQDPESELEDLAQTSDKLEKLV 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 699 KQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELinvnSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESE 778
Cdd:COG5185 260 EQNTDLRLEKLGENAESSKRLNENANNLIKQFENTKEKI----AEYTKSIDIKKATESLEEQLAAAEAEQELEESKRETE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 779 KMKIELKKTHAAETEMTLEKANSKLKQIE-KEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEK 857
Cdd:COG5185 336 TGIQNLTAEIEQGQESLTENLEAIKEEIEnIVGEVELSKSSEELDSFKDTIESTKESLDEIPQNQRGYAQEILATLEDTL 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 858 KQLIRDNDQ---AIKVLQDELENRSNQVRCAEKKLQHKELESQEQMTyIRQEYETKLKGLMPASLRQELEDTISSLKSQV 934
Cdd:COG5185 416 KAADRQIEElqrQIEQATSSNEEVSKLLNELISELNKVMREADEESQ-SRLEEAYDEINRSVRSKKEDLNEELTQIESRV 494
|
330
....*....|....*
gi 194386662 935 NFLQKRASILQEELT 949
Cdd:COG5185 495 STLKATLEKLRAKLE 509
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
307-946 |
4.65e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.27 E-value: 4.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 307 ETEETIRKLEKKVQTLIRDCQ----VIRETKEDQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKfdlQKQHTENIQ 382
Cdd:TIGR01612 1023 EKEKATNDIEQKIEDANKNIPnieiAIHTSIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNEIK---EKLKHYNFD 1099
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 383 ELLEDTNVR----LNKMESEYMAQTQSTNHMIKELEarvqQLTGEAENSnLQRQKLIQEKAELERCYQITCSELQEVKAR 458
Cdd:TIGR01612 1100 DFGKEENIKyadeINKIKDDIKNLDQKIDHHIKALE----EIKKKSENY-IDEIKAQINDLEDVADKAISNDDPEEIEKK 1174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 459 RNTLHKEKDHLVNDYEQNMKLLQ--TKYDADINLLKQEHALSAS------------------KASSMIEELEQNVCQLKQ 518
Cdd:TIGR01612 1175 IENIVTKIDKKKNIYDEIKKLLNeiAEIEKDKTSLEEVKGINLSygknlgklflekideekkKSEHMIKAMEAYIEDLDE 1254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 519 QLQESELQRKQQLRDQENKFQMEKSHLKHIYEEKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQR--LQA 596
Cdd:TIGR01612 1255 IKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELQKnlLDA 1334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 597 QQADAALGEFKRQV-------ELNS-EKVYAEMKEQMEKVE-------ADLTRSKSLREKQSKEFlwQLEDIRQRYEQQI 661
Cdd:TIGR01612 1335 QKHNSDINLYLNEIaniynilKLNKiKKIIDEVKEYTKEIEennknikDELDKSEKLIKKIKDDI--NLEECKSKIESTL 1412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 662 VELKLEHEQEKTHLLQQHNAEKDSlvrdhereieNLEKQLRAANMEHENQIQEFKKrdaqviadmeaqvhklreelINVN 741
Cdd:TIGR01612 1413 DDKDIDECIKKIKELKNHILSEES----------NIDTYFKNADENNENVLLLFKN--------------------IEMA 1462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 742 SQRKQQLVELgllreeEKQRATREHEIVVNKLKAESEKMKieLKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSS--- 818
Cdd:TIGR01612 1463 DNKSQHILKI------KKDNATNDHDFNINELKEHIDKSK--GCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSala 1534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 819 ------QIIAELQTTISSLKEENSQQQLAAERRLQDVRQ------KFEDEKKQLIRDNDQAIKVLQ--DELENRSNQVRC 884
Cdd:TIGR01612 1535 iknkfaKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEikkekfRIEDDAAKNDKSNKAAIDIQLslENFENKFLKISD 1614
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 194386662 885 AEKKLQH--KELESQEQ----MTYIRQEYETKLKGLMPASLRQELEdtisSLKSQVNFLQKRASILQE 946
Cdd:TIGR01612 1615 IKKKINDclKETESIEKkissFSIDSQDTELKENGDNLNSLQEFLE----SLKDQKKNIEDKKKELDE 1678
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
250-469 |
6.62e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.46 E-value: 6.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 250 SRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQK----ILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTL--- 322
Cdd:PHA02562 174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKkngeNIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIedp 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 323 ------IRDCQVIRETKEDQIAELKK------ICEQSTESLNNDWEKklhnaVAEMEQEKFDLQKQHteniqELLEDTNV 390
Cdd:PHA02562 254 saalnkLNTAAAKIKSKIEQFQKVIKmyekggVCPTCTQQISEGPDR-----ITKIKDKLKELQHSL-----EKLDTAID 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 391 RLNKMESEYMAQTQSTNHMIKELEARVQQLTGEaENSNLQRQKLIQE--------KAELERCYQitcsELQEVKARRNTL 462
Cdd:PHA02562 324 ELEEIMDEFNEQSKKLLELKNKISTNKQSLITL-VDKAKKVKAAIEElqaefvdnAEELAKLQD----ELDKIVKTKSEL 398
|
....*..
gi 194386662 463 HKEKDHL 469
Cdd:PHA02562 399 VKEKYHR 405
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
250-834 |
1.01e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 250 SRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTlyrsKQHETEETIRKLEKKVQTLIRDcqvi 329
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQ----QIKDLNDKLKKNKDKINKLNSD---- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 330 retkedqiaeLKKICEQSteSLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNvRLNKMESEYmaqtQSTNHM 409
Cdd:TIGR04523 105 ----------LSKINSEI--KNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEK-ELEKLNNKY----NDLKKQ 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 410 IKELEARVQQLTGEAENSNLQRQKLIQEKAELErcyqITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDaDIN 489
Cdd:TIGR04523 168 KEELENELNLLEKEKLNIQKNIDKIKNKLLKLE----LLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQ-EIN 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 490 LLKQEHALSASKASSMIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHIYEEKAHDLQSEL-------DK 562
Cdd:TIGR04523 243 EKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELE-QNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELkselknqEK 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 563 GKEDTQKKIHKFEEA---LKEKEEQLTRVTEVQRLQAQQADAALGEFKRQVE-LNSEK-VYAEMKEQMEKVEADLTRSKS 637
Cdd:TIGR04523 322 KLEEIQNQISQNNKIisqLNEQISQLKKELTNSESENSEKQRELEEKQNEIEkLKKENqSYKQEIKNLESQINDLESKIQ 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 638 LREKQSKEFLWQLEDIRQRY---EQQIVELKLEHEQEKTHL--LQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQI 712
Cdd:TIGR04523 402 NQEKLNQQKDEQIKKLQQEKellEKEIERLKETIIKNNSEIkdLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIK 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 713 QEFK------KRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKK 786
Cdd:TIGR04523 482 QNLEqkqkelKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEK 561
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 194386662 787 ---------THAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEE 834
Cdd:TIGR04523 562 eideknkeiEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
396-747 |
1.11e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.80 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 396 ESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSEL--QEVKARRNTLHKEKDHLVNDY 473
Cdd:pfam17380 267 ENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKarQAEMDRQAAIYAEQERMAMER 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 474 EQNM-KLLQTKYDADINLLKQEHALSASKASSMIEELEQNVCQLKQQL-QESELQRKQQLRDQEN--KFQMEKSHLKHIY 549
Cdd:pfam17380 347 ERELeRIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVrQELEAARKVKILEEERqrKIQQQKVEMEQIR 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 550 EEKAHDLQSELDKGKEDTQKKIHKFeealkeKEEQLTRVTEVQRLQAQQADAAlgefKRQVELNsekvyaemKEQMEKVE 629
Cdd:pfam17380 427 AEQEEARQREVRRLEEERAREMERV------RLEEQERQQQVERLRQQEEERK----RKKLELE--------KEKRDRKR 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 630 ADLTRSKSLREkqskeflwQLEDIRQryeqqivelKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHE 709
Cdd:pfam17380 489 AEEQRRKILEK--------ELEERKQ---------AMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEER 551
|
330 340 350
....*....|....*....|....*....|....*...
gi 194386662 710 NQIQEFKKRDAQVIADMEAqVHKLREELINVNSQRKQQ 747
Cdd:pfam17380 552 RRIQEQMRKATEERSRLEA-MEREREMMRQIVESEKAR 588
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
280-674 |
1.24e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 280 DADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEqsteslnndwekKL 359
Cdd:TIGR00606 686 VFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRN------------KL 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 360 HNAVAEMEQEKFDLQKQHTE-----NIQELLEDTNVRLNKMESEYMaQTQSTNHMIKELEAR---------VQQLTGEAE 425
Cdd:TIGR00606 754 QKVNRDIQRLKNDIEEQETLlgtimPEEESAKVCLTDVTIMERFQM-ELKDVERKIAQQAAKlqgsdldrtVQQVNQEKQ 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 426 NSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLlkQEHALSASKASSM 505
Cdd:TIGR00606 833 EKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEV--QSLIREIKDAKEQ 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 506 IEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEEKaHDLQSELDKGKEDTQKK----IHKFEEALKEK 581
Cdd:TIGR00606 911 DSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM-KDIENKIQDGKDDYLKQketeLNTVNAQLEEC 989
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 582 EEQLTRVTEVQRLQAQQADAA-LGEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLE---DIRQRY 657
Cdd:TIGR00606 990 EKHQEKINEDMRLMRQDIDTQkIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEeniDLIKRN 1069
|
410
....*....|....*..
gi 194386662 658 EQQIVELKLEHEQEKTH 674
Cdd:TIGR00606 1070 HVLALGRQKGYEKEIKH 1086
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
397-809 |
1.51e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.76 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 397 SEYMAQTQSTNHMIKELEArvqqltgEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLhkEKDHLVNDYEQN 476
Cdd:COG5022 806 LGSRKEYRSYLACIIKLQK-------TIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLL--KKETIYLQSAQR 876
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 477 MKLLQTKYDAdinllKQEHALSASKASSMIEELEQNVCQLKQQLQESELQrkqqlrdqENKFQMEKS-HLKHIYEEKAHD 555
Cdd:COG5022 877 VELAERQLQE-----LKIDVKSISSLKLVNLELESEIIELKKSLSSDLIE--------NLEFKTELIaRLKKLLNNIDLE 943
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 556 LQSELDKGKEDTQKKIHKFEEALKE---------------KEEQLTRVTEVQRLQaqqadAALGEFKRQVELNSEKVyae 620
Cdd:COG5022 944 EGPSIEYVKLPELNKLHEVESKLKEtseeyedllkkstilVREGNKANSELKNFK-----KELAELSKQYGALQEST--- 1015
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 621 mkEQMEKVEADLTRSKSL--REKQSKEFLWQLEDIR----------QRYEQQIVELKLEHEQEKTHLLQQHNAEKdslVR 688
Cdd:COG5022 1016 --KQLKELPVEVAELQSAskIISSESTELSILKPLQklkgllllenNQLQARYKALKLRRENSLLDDKQLYQLES---TE 1090
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 689 DHEREIEnlEKQLRAANMEHENQIQEFKKRDAQVIA-DMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHE 767
Cdd:COG5022 1091 NLLKTIN--VKDLEVTNRNLVKPANVLQFIVAQMIKlNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEAL 1168
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 194386662 768 IVVNKLKAESEKmkielKKTHAAETEMTLEKANSKLKQIEKE 809
Cdd:COG5022 1169 PSPPPFAALSEK-----RLYQSALYDEKSKLSSSEVNDLKNE 1205
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
315-890 |
1.66e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.04 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 315 LEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESlnndwekklhnavAEMEQEKFDLQKQHTENIQELledtnvrlNK 394
Cdd:pfam05557 32 LEKKASALKRQLDRESDRNQELQKRIRLLEKREAEA-------------EEALREQAELNRLKKKYLEAL--------NK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 395 MESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKeKDHLVNDYE 474
Cdd:pfam05557 91 KLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEK-QQSSLAEAE 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 475 QNMKLLQTKydadinLLKQEHALSASKASSmieeleqnvcqlKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEEKAH 554
Cdd:pfam05557 170 QRIKELEFE------IQSQEQDSEIVKNSK------------SELARIPELEKELERLREHNKHLNENIENKLLLKEEVE 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 555 DLQSELDKgKEDTQKKIHKFEealKEKEEQLTRVTEVQRLQAQQAdaalgefkrqVELNSEKVYAEMKEQMEKVEADLTR 634
Cdd:pfam05557 232 DLKRKLER-EEKYREEAATLE---LEKEKLEQELQSWVKLAQDTG----------LNLRSPEDLSRRIEQLQQREIVLKE 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 635 SKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHERE-----IENLEKQLraANMEHE 709
Cdd:pfam05557 298 ENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDgyraiLESYDKEL--TMSNYS 375
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 710 NQIQEFKKRDAQVI-------ADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKI 782
Cdd:pfam05557 376 PQLLERIEEAEDMTqkmqahnEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSKEEVDSLRRKLETLEL 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 783 ELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSlkeeNSQQQLAAE-RRLQDVRQKFEDEKKQLI 861
Cdd:pfam05557 456 ERQRLREQKNELEMELERRCLQGDYDPKKTKVLHLSMNPAAEAYQQRK----NQLEKLQAEiERLKRLLKKLEDDLEQVL 531
|
570 580
....*....|....*....|....*....
gi 194386662 862 RDNDQAIKVLQDELENRSNQVRCAEKKLQ 890
Cdd:pfam05557 532 RLPETTSTMNFKEVLDLRKELESAELKNQ 560
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
508-783 |
1.92e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 508 ELEQNVCQLkQQLQESELQRKQQLrDQENKFQMEKSHLK-HIYEEKAHDLQSELDKGKEDtQKKIHKFEEALKEKEEQLT 586
Cdd:COG3096 851 ELAQHRAQE-QQLRQQLDQLKEQL-QLLNKLLPQANLLAdETLADRLEELREELDAAQEA-QAFIQQHGKALAQLEPLVA 927
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 587 RV----TEVQRLQA--QQADAALGEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQsKEFLWQLEDIRQRYEQQ 660
Cdd:COG3096 928 VLqsdpEQFEQLQAdyLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDAVGLLGENSDLNEKL-RARLEQAEEARREAREQ 1006
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 661 ivelkLEHEQEKthlLQQHNAEKDSLVRDHereienlekqlRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREEL--- 737
Cdd:COG3096 1007 -----LRQAQAQ---YSQYNQVLASLKSSR-----------DAKQQTLQELEQELEELGVQADAEAEERARIRRDELhee 1067
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 194386662 738 INVNSQRKQQLvelgllreeEKQRATREHEI--VVNKLKAESEKMKIE 783
Cdd:COG3096 1068 LSQNRSRRSQL---------EKQLTRCEAEMdsLQKRLRKAERDYKQE 1106
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
398-766 |
2.26e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.88 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 398 EYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNM 477
Cdd:pfam02463 167 LKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 478 KLLQTKYDADINLLKQEHALSASKASSMIEELEQnvcqlkQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEEKAHDLQ 557
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKE------KKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 558 SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALGEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKS 637
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 638 LREKQSKEFLWQLEDiRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKK 717
Cdd:pfam02463 401 SEEEKEAQLLLELAR-QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQL 479
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 194386662 718 RDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREH 766
Cdd:pfam02463 480 VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAH 528
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
649-798 |
2.40e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 649 QLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHERE-------IENLEKQLRAANMEHENQIQEFKKRDAQ 721
Cdd:PRK12704 32 KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKElrerrneLQKLEKRLLQKEENLDRKLELLEKREEE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 722 V------IADMEAQVHKLREELINVNSQRKQQLVEL-GLLREEEKQratreheIVVNKLKAESEKMKIELKKTHAAETEM 794
Cdd:PRK12704 112 LekkekeLEQKQQELEKKEEELEELIEEQLQELERIsGLTAEEAKE-------ILLEKVEEEARHEAAVLIKEIEEEAKE 184
|
....
gi 194386662 795 TLEK 798
Cdd:PRK12704 185 EADK 188
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
302-833 |
2.48e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 302 RSKQHETEETIRKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLN-NDWEKKLHNAVAEMEQEKFDL------Q 374
Cdd:TIGR00606 583 SKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGsQDEESDLERLKEEIEKSSKQRamlagaT 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 375 KQHTENIQELLEDTNV------RLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQIT 448
Cdd:TIGR00606 663 AVYSQFITQLTDENQSccpvcqRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLK 742
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 449 CSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTkYDADINLLK--QEHALSASKASSMIEELEQNVCQLKQQLQESELQ 526
Cdd:TIGR00606 743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGT-IMPEEESAKvcLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLD 821
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 527 RKQQlrdQENKFQMEKSHLKHIYEEKAHDLQseldKGKEDTQKKIHKFEEALKEkeeqltrvTEVQRLQAQQADAALGEF 606
Cdd:TIGR00606 822 RTVQ---QVNQEKQEKQHELDTVVSKIELNR----KLIQDQQEQIQHLKSKTNE--------LKSEKLQIGTNLQRRQQF 886
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 607 KRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSK--EFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNA--- 681
Cdd:TIGR00606 887 EEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEkeELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKiqd 966
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 682 EKDSLVRDHEREIENLEKQLRaanmEHENQIQEFKKRDAQVIADMEAQvhKLREELINVNSQRKQQLVELGLLREEEKQR 761
Cdd:TIGR00606 967 GKDDYLKQKETELNTVNAQLE----ECEKHQEKINEDMRLMRQDIDTQ--KIQERWLQDNLTLRKRENELKEVEEELKQH 1040
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 194386662 762 ATREHEIVVNKLKAESEKMKIELK-------KTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKE 833
Cdd:TIGR00606 1041 LKEMGQMQVLQMKQEHQKLEENIDlikrnhvLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKD 1119
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
249-937 |
2.50e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 249 LSRIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLIRDCQV 328
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 329 iretkEDQIAELKKiceqsteslnndwekklhnavaeMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQtqstnh 408
Cdd:TIGR00606 268 -----DNEIKALKS-----------------------RKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRT------ 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 409 mIKELEARVQQLTGEAENSNLQRQKLIQEKAELER---CYQITCSELQEVKARRNTLHKE-KDHLVNDYEQNMKLLQTKY 484
Cdd:TIGR00606 314 -VREKERELVDCQRELEKLNKERRLLNQEKTELLVeqgRLQLQADRHQEHIRARDSLIQSlATRLELDGFERGPFSERQI 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 485 DADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKfqmekshlKHIYEEKAHDLQSELDKGK 564
Cdd:TIGR00606 393 KNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELK--------KEILEKKQEELKFVIKELQ 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 565 --EDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALGEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQ 642
Cdd:TIGR00606 465 qlEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDK 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 643 SKEFlWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDslVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQV 722
Cdd:TIGR00606 545 MDKD-EQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKE--INQTRDRLAKLNKELASLEQNKNHINNELESKEEQL 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 723 IA------------DMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIV-----VNKLKAESEKMKIELK 785
Cdd:TIGR00606 622 SSyedklfdvcgsqDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCpvcqrVFQTEAELQEFISDLQ 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 786 -KTHAAETEmtLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQlAAERRLQDVRQKFEDEKKQL--IR 862
Cdd:TIGR00606 702 sKLRLAPDK--LKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQ-KVNRDIQRLKNDIEEQETLLgtIM 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 863 DNDQAIKVLQDE---LENRSNQVRCAEKKLQHKELESQ-----EQMTYIRQEYETK--------LKGLMPASLRQELEDT 926
Cdd:TIGR00606 779 PEEESAKVCLTDvtiMERFQMELKDVERKIAQQAAKLQgsdldRTVQQVNQEKQEKqheldtvvSKIELNRKLIQDQQEQ 858
|
730
....*....|.
gi 194386662 927 ISSLKSQVNFL 937
Cdd:TIGR00606 859 IQHLKSKTNEL 869
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
537-954 |
2.57e-03 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 41.82 E-value: 2.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 537 KFQMEKSHLKHIYEEKAHDLQSELDKGKED---TQKKIHKFEEALKEKEEQLTRVTEVQR----LQAQQADAALGEFKRQ 609
Cdd:pfam15964 217 KWRLELEKLKLLYEAKTEVLESQVKSLRKDlaeSQKTCEDLKERLKHKESLVAASTSSRVgglcLKCAQHEAVLAQTHTN 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 610 VELNSekVYAEMKEQMEKVEADLTRSKSLREKQSKEFlwqledirQRYEQ--QIVELKLEHEQEKTHLLQQHNAEKDSLV 687
Cdd:pfam15964 297 VHMQT--IERLTKERDDLMSALVSVRSSLAEAQQRES--------SAYEQvkQAVQMTEEANFEKTKALIQCEQLKSELE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 688 RDHEREIENLEKQLRAANMEHENQIQEFKKRD----------AQVIADMEAQVHKLREELINVNSQRKQQLVELGlLREE 757
Cdd:pfam15964 367 RQKERLEKELASQQEKRAQEKEALRKEMKKEReelgatmlalSQNVAQLEAQVEKVTREKNSLVSQLEEAQKQLA-SQEM 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 758 EKQRATREHEIVVNKLKAESEKMKIELKKtHAAETEMTLEKANSKLKQIE---KEYTQKLAKSSQIIAELQTTISSLKEE 834
Cdd:pfam15964 446 DVTKVCGEMRYQLNQTKMKKDEAEKEHRE-YRTKTGRQLEIKDQEIEKLGlelSESKQRLEQAQQDAARAREECLKLTEL 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 835 NSQqqlaAERRLQDVRQkfEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQMTYIRQE-YETKLKG 913
Cdd:pfam15964 525 LGE----SEHQLHLTRL--EKESIQQSFSNEAKAQALQAQQREQELTQKMQQMEAQHDKTVNEQYSLLTSQNtFIAKLKE 598
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 194386662 914 LMpASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGR 954
Cdd:pfam15964 599 EC-CTLAKKLEEITQKSRSEVEQLSQEKEYLQDRLEKLQKR 638
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
251-522 |
2.59e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 251 RIREKELDMKTKMMEAKFHEEKLKLQQKHDADVQKILERKNNEIEELktlyRSKQHETEETIRKLEKKVQTLIRDCQVIR 330
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA----EEELAEAEAEIEELEAQIEQLKEELKALR 802
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 331 ETKEDQIAELKkicEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMI 410
Cdd:TIGR02168 803 EALDELRAELT---LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 411 KE---LEARVQQLTGEAENSNLQRQKLIQEKAELERcyqitcsELQEVKARRNTLHKEKDHLvndyEQNMKLLQTKYDAD 487
Cdd:TIGR02168 880 NErasLEEALALLRSELEELSEELRELESKRSELRR-------ELEELREKLAQLELRLEGL----EVRIDNLQERLSEE 948
|
250 260 270
....*....|....*....|....*....|....*
gi 194386662 488 INLLKQEHALSASKASSMIEELEQNVCQLKQQLQE 522
Cdd:TIGR02168 949 YSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
410-860 |
3.29e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 3.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 410 IKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQitcsELQEVKARRNTLHKEKDHL-----VNDYEQNMKLLQTKY 484
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEA----ELEELREELEKLEKLLQLLplyqeLEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 485 DAdinLLKQEHALSASKASsmIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLkhiyEEKAHDLQSELdkgk 564
Cdd:COG4717 149 EE---LEERLEELRELEEE--LEELEAELAELQEELEELLEQLSLATEEELQDLAEELEEL----QQRLAELEEEL---- 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 565 EDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQ---ADAALGEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREK 641
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEAAALEERLKEARlllLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAR 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 642 QSKEFLWQLEDIRQRYEQQIVElklehEQEKTHLLQQHNAEKD---SLVRDHEREIENLEKQLRAAN-MEHENQIQEFKK 717
Cdd:COG4717 296 EKASLGKEAEELQALPALEELE-----EEELEELLAALGLPPDlspEELLELLDRIEELQELLREAEeLEEELQLEELEQ 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 718 RDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEekqratreheivvnkLKAESEKMKIELKKTHAAETEMTLE 797
Cdd:COG4717 371 EIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQ---------------LEELLGELEELLEALDEEELEEELE 435
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 194386662 798 KANSKLKQIEKEYTQKLAKSSQIIAELqttisslkeensqQQLAAERRLQDVRQKFEDEKKQL 860
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAEL-------------EQLEEDGELAELLQELEELKAEL 485
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
430-857 |
3.43e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 3.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 430 QRQKLIQEKAELERCYQITcSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKydadiNLLKQEHALSASKASSM--IE 507
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQ-EELEELEEELEELEAELEELREELEKLEKLLQLL-----PLYQELEALEAELAELPerLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 508 ELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHIYEEKAHDLQ----------SELDKGKEDTQKKIHKFEEA 577
Cdd:COG4717 150 ELEERLEELRELEEELE-ELEAELAELQEELEELLEQLSLATEEELQDLAeeleelqqrlAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 578 LKEKEEQLTRVTEVQRLQAQQAD----------AALGEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEF- 646
Cdd:COG4717 229 LEQLENELEAAALEERLKEARLLlliaaallalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELq 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 647 -LWQLEDIRQR-YEQQIVELKLEHEQEKTHLLQQHNAEKDslVRDHEREIENLEKQLRAANMEHENQiQEFKKRDAQVIA 724
Cdd:COG4717 309 aLPALEELEEEeLEELLAALGLPPDLSPEELLELLDRIEE--LQELLREAEELEEELQLEELEQEIA-ALLAEAGVEDEE 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 725 DMEAQVHKLRE--ELINVNSQRKQQLVELGLLREEEKQRATREheivvnKLKAESEKMKIELKKTHAAETEMTLEKA--N 800
Cdd:COG4717 386 ELRAALEQAEEyqELKEELEELEEQLEELLGELEELLEALDEE------ELEEELEELEEELEELEEELEELREELAelE 459
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 194386662 801 SKLKQIEKEytQKLAKSSQIIAELQTTISSLKEENSQQQLAAErRLQDVRQKFEDEK 857
Cdd:COG4717 460 AELEQLEED--GELAELLQELEELKAELRELAEEWAALKLALE-LLEEAREEYREER 513
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
385-755 |
4.04e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 385 LEDTNVRLNKME---SEYMAQTQSTNHMIKELEARVQQLTGEAENSN-LQRQKLIQEKAELErcyqitcSELQEVkarrn 460
Cdd:PRK04863 839 LRQLNRRRVELEralADHESQEQQQRSQLEQAKEGLSALNRLLPRLNlLADETLADRVEEIR-------EQLDEA----- 906
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 461 tlhkekdhlvndyEQNMKLLQtKYDADINLLKQEHALSASKASSmIEELEQNVCQLKQQLQESelqrKQQLRDQENKFQm 540
Cdd:PRK04863 907 -------------EEAKRFVQ-QHGNALAQLEPIVSVLQSDPEQ-FEQLKQDYQQAQQTQRDA----KQQAFALTEVVQ- 966
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 541 EKSHLKhiYEEKAHDLqseldkgkEDTQKKIHKFEEALKEKEEQLTRvtevQRLQAQQADAALGEFKrqvelnsekvyae 620
Cdd:PRK04863 967 RRAHFS--YEDAAEML--------AKNSDLNEKLRQRLEQAEQERTR----AREQLRQAQAQLAQYN------------- 1019
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 621 mkeqmeKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDH---EREIENL 697
Cdd:PRK04863 1020 ------QVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLtfcEAEMDNL 1093
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 194386662 698 EKQLRAANMEH---ENQIQEFKKRDAQVI-----ADMEAQVHklREELINVNSQ--RKQQLVELGLLR 755
Cdd:PRK04863 1094 TKKLRKLERDYhemREQVVNAKAGWCAVLrlvkdNGVERRLH--RRELAYLSADelRSMSDKALGALR 1159
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
592-747 |
4.74e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 40.46 E-value: 4.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 592 QRLQAQQADAALGEFKRQVELNSEKVYAEMKEQMEKV-EADLTRSKSLREKQSKEFlwqlEDIRQRYEQqivelkLEHEQ 670
Cdd:PRK12705 28 RQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRErNQQRQEARREREELQREE----ERLVQKEEQ------LDARA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 671 EKTHLLQQHNAEKDSLVRDHEREIENLEKQL-----RAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRK 745
Cdd:PRK12705 98 EKLDNLENQLEEREKALSARELELEELEKQLdnelyRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERK 177
|
..
gi 194386662 746 QQ 747
Cdd:PRK12705 178 AQ 179
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
556-768 |
4.75e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 4.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 556 LQSELDKGKEDTQKKIHKFEEALKEKEEQLTRV-TEVQRLQAQQADAALGEfkrQVELNSEKVyAEMKEQMEKVEADLTR 634
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAeAALEEFRQKNGLVDLSE---EAKLLLQQL-SELESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 635 SKSLR---EKQSKEFLWQLEDIR-----QRYEQQIVELKLEHEQEKTHLLQQHnaekdslvrdheREIENLEKQLRAANm 706
Cdd:COG3206 238 AEARLaalRAQLGSGPDALPELLqspviQQLRAQLAELEAELAELSARYTPNH------------PDVIALRAQIAALR- 304
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 194386662 707 ehenqiQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQ--RATREHEI 768
Cdd:COG3206 305 ------AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAElrRLEREVEV 362
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
282-858 |
5.21e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 40.66 E-value: 5.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 282 DVQKILERKNNEIEELKtlyrsKQHETEETI-RKLEKKVQTLIRDCQVIRETKEDQIAELKKICEQSTESLNNDWEKKLH 360
Cdd:PRK01156 187 YLEEKLKSSNLELENIK-----KQIADDEKShSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTA 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 361 NAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYM---AQTQSTNHMIKELEARVQQLTG--------EAENSNL 429
Cdd:PRK01156 262 ESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFkykNDIENKKQILSNIDAEINKYHAiikklsvlQKDYNDY 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 430 QRQK--------LIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDAdINLLKQEHALSASK 501
Cdd:PRK01156 342 IKKKsryddlnnQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDA-IKKELNEINVKLQD 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 502 ASSMIEELEQNVCQLKQQLQesELQRKQQLRDQENKFQMEKSHLKhiyEEKAHDLqseldkgKEDTQKKIHKFEEALKEK 581
Cdd:PRK01156 421 ISSKVSSLNQRIRALRENLD--ELSRNMEMLNGQSVCPVCGTTLG---EEKSNHI-------INHYNEKKSRLEEKIREI 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 582 EEQLTRVTEVQRLQAQQADAALGEFKRQVElNSEKVYAEMKEQMEKVEADLTRsksLREKQSKeflwqLEDIRQRYEQqi 661
Cdd:PRK01156 489 EIEVKDIDEKIVDLKKRKEYLESEEINKSI-NEYNKIESARADLEDIKIKINE---LKDKHDK-----YEEIKNRYKS-- 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 662 veLKLEHEQEKTHLLQQHNAEKDSLvrdherEIENLEKQLRaanmEHENQIQEFKKRDAQVIADM-------EAQVHKLR 734
Cdd:PRK01156 558 --LKLEDLDSKRTSWLNALAVISLI------DIETNRSRSN----EIKKQLNDLESRLQEIEIGFpddksyiDKSIREIE 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 735 EELINVNSQRKQQlvelgllreEEKQRATREHEIVVNKLKAESEKMKielkkthaaETEMTLEKANSKLKQIEKEYTQ-- 812
Cdd:PRK01156 626 NEANNLNNKYNEI---------QENKILIEKLRGKIDNYKKQIAEID---------SIIPDLKEITSRINDIEDNLKKsr 687
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 194386662 813 -KLAKSSQIIAELQTTISSLKEENSQqqlaAERRLQDVRQKFEDEKK 858
Cdd:PRK01156 688 kALDDAKANRARLESTIEILRTRINE----LSDRINDINETLESMKK 730
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
744-952 |
5.33e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 5.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 744 RKQQLVELGLLREEEK----QRATREHEIV---VNKLKAESEKMKI---ELKKTHAAETEMTLEKANSKLKQIEKEYTQK 813
Cdd:PRK05771 26 HELGVVHIEDLKEELSnerlRKLRSLLTKLseaLDKLRSYLPKLNPlreEKKKVSVKSLEELIKDVEEELEKIEKEIKEL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 814 LAKssqiIAELQTTISSLKEENSQQQ--------LAAERRLQDVRQKF----EDEKKQLIRDNDQAIKVLQDELENRSNQ 881
Cdd:PRK05771 106 EEE----ISELENEIKELEQEIERLEpwgnfdldLSLLLGFKYVSVFVgtvpEDKLEELKLESDVENVEYISTDKGYVYV 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 194386662 882 VRCAEKKLQHKELESQEQMTYIRQEYETKLKglmPASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQ 952
Cdd:PRK05771 182 VVVVLKELSDEVEEELKKLGFERLELEEEGT---PSELIREIKEELEEIEKERESLLEELKELAKKYLEEL 249
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
327-906 |
5.72e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 5.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 327 QVIRETKEDQIAELKKICEQST---ESLNNDWEKKLHNAVAEMEQ--EKFDLQKQHTENIQELLEDTNVRLNKMESEYMA 401
Cdd:pfam01576 319 QELRSKREQEVTELKKALEEETrshEAQLQEMRQKHTQALEELTEqlEQAKRNKANLEKAKQALESENAELQAELRTLQQ 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 402 QTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQ 481
Cdd:pfam01576 399 AKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQ 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 482 TKYDADINLLKQEHALSASKASSM---------IEELEQNVCQLKQQLQESELQRKQ------QLRDQENKFQMEKSHLK 546
Cdd:pfam01576 479 EETRQKLNLSTRLRQLEDERNSLQeqleeeeeaKRNVERQLSTLQAQLSDMKKKLEEdagtleALEEGKKRLQRELEALT 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 547 HIYEEKAHD----------LQSELDKGKEDTQ----------KKIHKFEEALKE-------------KEEQLTRVTEVQR 593
Cdd:pfam01576 559 QQLEEKAAAydklektknrLQQELDDLLVDLDhqrqlvsnleKKQKKFDQMLAEekaisaryaeerdRAEAEAREKETRA 638
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 594 LQAQQADAALGEFKRQVELNSEKVYAEM------KEQMEKVEADLTRSKSLREKQSKEFLWQL----------EDIRQRY 657
Cdd:pfam01576 639 LSLARALEEALEAKEELERTNKQLRAEMedlvssKDDVGKNVHELERSKRALEQQVEEMKTQLeeledelqatEDAKLRL 718
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 658 EQQIVELKLEHEQEKTHLLQQHNAEKDSL---VRDHEREIEN---------------------LEKQLRAANMEHENQIQ 713
Cdd:pfam01576 719 EVNMQALKAQFERDLQARDEQGEEKRRQLvkqVRELEAELEDerkqraqavaakkkleldlkeLEAQIDAANKGREEAVK 798
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 714 EFKKrdaqviadMEAQVHKLREELINVNSQRKQQLVelgLLREEEKQRATREHEIVV---NKLKAESEKMKIELKKTHAA 790
Cdd:pfam01576 799 QLKK--------LQAQMKDLQRELEEARASRDEILA---QSKESEKKLKNLEAELLQlqeDLAASERARRQAQQERDELA 867
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 791 ETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKE---------ENSQQQLAAERRLQdvrQKFEDEKKQLI 861
Cdd:pfam01576 868 DEIASGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNDrlrkstlqvEQLTTELAAERSTS---QKSESARQQLE 944
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 194386662 862 RDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQMTYIRQE 906
Cdd:pfam01576 945 RQNKELKAKLQEMEGTVKSKFKSSIAALEAKIAQLEEQLEQESRE 989
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
369-704 |
5.78e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 5.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 369 EKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERcyqit 448
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEE----- 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 449 csELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQE-HALSA--SKASSMIEELEQNVCQLKQQLQESEL 525
Cdd:TIGR02169 252 --ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKiGELEAeiASLERSIAEKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 526 QRKQQLRDQEN-------------KFQMEKSHLKHIYEEKAHDLQSELDKGKE--DTQKKIHKFEEALKEKEEQLTRVTE 590
Cdd:TIGR02169 330 EIDKLLAEIEElereieeerkrrdKLTEEYAELKEELEDLRAELEEVDKEFAEtrDELKDYREKLEKLKREINELKRELD 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 591 VQRLQAQQADAALGEFKRQVELNSEKVY---AEMKEQMEKVEADLTRSKSLREKQSKEfLWQLEDIRQRYEqqivelKLE 667
Cdd:TIGR02169 410 RLQEELQRLSEELADLNAAIAGIEAKINeleEEKEDKALEIKKQEWKLEQLAADLSKY-EQELYDLKEEYD------RVE 482
|
330 340 350
....*....|....*....|....*....|....*..
gi 194386662 668 HEQEKThllqqhnaekdslvrdhEREIENLEKQLRAA 704
Cdd:TIGR02169 483 KELSKL-----------------QRELAEAEAQARAS 502
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
501-862 |
6.00e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 40.22 E-value: 6.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 501 KASSMIEELEQNVCQLKQQLQESeLQRKQQLRDQENKFQMEKSHLKHIYEEkahdLQSELdkgkedtQKKIHKFEEALKE 580
Cdd:pfam06160 83 KAKKALDEIEELLDDIEEDIKQI-LEELDELLESEEKNREEVEELKDKYRE----LRKTL-------LANRFSYGPAIDE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 581 KEEQLtrvtevqrlqaqqaDAALGEFKRQVELNSE-------KVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDI 653
Cdd:pfam06160 151 LEKQL--------------AEIEEEFSQFEELTESgdylearEVLEKLEEETDALEELMEDIPPLYEELKTELPDQLEEL 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 654 RQRYEQQIVE-LKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANmEHENQIQEfkkrDAQVIADMEAQVHK 732
Cdd:pfam06160 217 KEGYREMEEEgYALEHLNVDKEIQQLEEQLEENLALLENLELDEAEEALEEIE-ERIDQLYD----LLEKEVDAKKYVEK 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 733 LREELINVNSQRKQQLVELGLLREEEKQRATREHEivvnklkaesekmkiELKKTHAAETEmtLEKANSKLKQIEKEYTQ 812
Cdd:pfam06160 292 NLPEIEDYLEHAEEQNKELKEELERVQQSYTLNEN---------------ELERVRGLEKQ--LEELEKRYDEIVERLEE 354
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 194386662 813 KLAKSSQIIAELQTTISSLKEENSQQQLAAErRLQDVRQKFEDEKKQLIR 862
Cdd:pfam06160 355 KEVAYSELQEELEEILEQLEEIEEEQEEFKE-SLQSLRKDELEAREKLDE 403
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
566-715 |
6.35e-03 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 40.24 E-value: 6.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 566 DTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAAL--GEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQs 643
Cdd:COG2268 211 ETEIAIAQANREAEEAELEQEREIETARIAEAEAELAKkkAEERREAETARAEAEAAYEIAEANAEREVQRQLEIAERE- 289
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 194386662 644 KEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEF 715
Cdd:COG2268 290 REIELQEKEAEREEAELEADVRKPAEAEKQAAEAEAEAEAEAIRAKGLAEAEGKRALAEAWNKLGDAAILLM 361
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
253-443 |
6.73e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 6.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 253 REKELDMKTKMMEAKfhEEKLKLQQKHDADVQKILERKNNEIEELKTLYRSKQHE---TEETIRKLEKKVQTLIRDCQVI 329
Cdd:COG4942 25 AEAELEQLQQEIAEL--EKELAALKKEEKALLKQLAALERRIAALARRIRALEQElaaLEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 330 RETKEDQIAELKKICEQSTESL---NNDWEK-----KLHNAVAEMEQEKFDLQKQHTENIQEL---LEDTNVRLNKMESE 398
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALllsPEDFLDavrrlQYLKYLAPARREQAEELRADLAELAALraeLEAERAELEALLAE 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 194386662 399 YMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELER 443
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
683-935 |
7.74e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 40.41 E-value: 7.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 683 KDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRA 762
Cdd:PTZ00108 997 KEYLLGKLERELARLSNKVRFIKHVINGELVITNAKKKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDE 1076
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 763 TREHEIV--------------------VNKLKAESEKMKIELKKTHAAETE-MTLEKANSKLKQIEKEYTQKLAKSSQII 821
Cdd:PTZ00108 1077 DDEEELGaavsydyllsmpiwsltkekVEKLNAELEKKEKELEKLKNTTPKdMWLEDLDKFEEALEEQEEVEEKEIAKEQ 1156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 822 AELQTTISSLKEENSQQQLAAERRlqdvrqkfedeKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQMT 901
Cdd:PTZ00108 1157 RLKSKTKGKASKLRKPKLKKKEKK-----------KKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQ 1225
|
250 260 270
....*....|....*....|....*....|....
gi 194386662 902 YIRQEYETKLKGlmPASLRQELEDTISSLKSQVN 935
Cdd:PTZ00108 1226 EDDEEQKTKPKK--SSVKRLKSKKNNSSKSSEDN 1257
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
357-939 |
8.59e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.00 E-value: 8.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 357 KKLHNAVAEMEQEKFDLQKQHT--ENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKL 434
Cdd:TIGR04523 43 KTIKNELKNKEKELKNLDKNLNkdEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 435 IQEKAELERcyqitcsELQEVKARRNTLHKEkdhlVNDYEQNMKLLQTKYDaDINLLKQEHALSASKASSMIEELEQNVC 514
Cdd:TIGR04523 123 EVELNKLEK-------QKKENKKNIDKFLTE----IKKKEKELEKLNNKYN-DLKKQKEELENELNLLEKEKLNIQKNID 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 515 QLKQQLqeseLQRKQQLRDQENKFQMEKSHLKHIYEEKAHdlQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQ-- 592
Cdd:TIGR04523 191 KIKNKL----LKLELLLSNLKKKIQKNKSLESQISELKKQ--NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQnk 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 593 --------RLQAQQADAALGEFKRQV--------ELNSEKV---YAEMKEQMEKVEADLTRSKSlREKQSKEFLWQLEDI 653
Cdd:TIGR04523 265 ikkqlsekQKELEQNNKKIKELEKQLnqlkseisDLNNQKEqdwNKELKSELKNQEKKLEEIQN-QISQNNKIISQLNEQ 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 654 RQRYEQQIVELKLEHeQEKTHLLQQHNAEKDSLVRDHE---REIENLEKQLRAANMEHENQIQEFKKRDAQvIADMEAQV 730
Cdd:TIGR04523 344 ISQLKKELTNSESEN-SEKQRELEEKQNEIEKLKKENQsykQEIKNLESQINDLESKIQNQEKLNQQKDEQ-IKKLQQEK 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 731 HKLREELINVNSQRKQQLVELGLLREEEKQRatrehEIVVNKLKAESEKMKIELKkthaaETEMTLEKANSKLKQIEKEY 810
Cdd:TIGR04523 422 ELLEKEIERLKETIIKNNSEIKDLTNQDSVK-----ELIIKNLDNTRESLETQLK-----VLSRSINKIKQNLEQKQKEL 491
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 811 TQKLAKSSQIIAE---LQTTISSLKEENS---QQQLAAERRLQDVRQKFEDEKKQLIRDnDQAIKVLQDELENRSNQVRC 884
Cdd:TIGR04523 492 KSKEKELKKLNEEkkeLEEKVKDLTKKISslkEKIEKLESEKKEKESKISDLEDELNKD-DFELKKENLEKEIDEKNKEI 570
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*.
gi 194386662 885 AEKKLQHKELE-SQEQMTYIRQEYETKLKGLMpaSLRQELEDTISSLKSQVNFLQK 939
Cdd:TIGR04523 571 EELKQTQKSLKkKQEEKQELIDQKEKEKKDLI--KEIEEKEKKISSLEKELEKAKK 624
|
|
| TOPEUc |
smart00435 |
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina ... |
495-583 |
8.89e-03 |
|
DNA Topoisomerase I (eukaryota); DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Pssm-ID: 214661 [Multi-domain] Cd Length: 391 Bit Score: 39.64 E-value: 8.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 495 HALSASKASSMIEELEQNVCQLKQQLQESELQRKQQlRDQENKFQMEKSHLKHIYEEKAHDLQSELDKGK--EDTQKKIH 572
Cdd:smart00435 275 HEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLK-RKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKqiERLEERIE 353
|
90
....*....|.
gi 194386662 573 KFEEALKEKEE 583
Cdd:smart00435 354 KLEVQATDKEE 364
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
288-897 |
9.12e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 9.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 288 ERKNNEIEELKTLYRSKQHETEETIRKLEKKVQTLI---RDCQVIRETKEDQIAELKKICEQSTESLNNDwEKKLHNAVA 364
Cdd:pfam01576 172 EEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEkakRKLEGESTDLQEQIAELQAQIAELRAQLAKK-EEELQAALA 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 365 EMEQE---KFDLQKQHTE---NIQELLEDtnvrlnkMESEYMAQTQSTNH---MIKELEARVQQLTGEAENSNLQ---RQ 432
Cdd:pfam01576 251 RLEEEtaqKNNALKKIREleaQISELQED-------LESERAARNKAEKQrrdLGEELEALKTELEDTLDTTAAQqelRS 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 433 KLIQEKAELERCYQitcselQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKYDADINLLKQEHALSASKAssmieELEQN 512
Cdd:pfam01576 324 KREQEVTELKKALE------EETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENA-----ELQAE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 513 VCQLKQQLQESELQRK---QQLRDQENKFQmEKSHLKHIYEEKAHDLQSELDKGK---EDTQKKIHKFEEALKEKEEQLt 586
Cdd:pfam01576 393 LRTLQQAKQDSEHKRKkleGQLQELQARLS-ESERQRAELAEKLSKLQSELESVSsllNEAEGKNIKLSKDVSSLESQL- 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 587 rvTEVQRLQAQQADAALGEFKRQVELNSEKvyAEMKEQMEKVEAdltrSKSLREKQSKEFLWQLEDIRQRYEQQIVELKL 666
Cdd:pfam01576 471 --QDTQELLQEETRQKLNLSTRLRQLEDER--NSLQEQLEEEEE----AKRNVERQLSTLQAQLSDMKKKLEEDAGTLEA 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 667 EHE-----QEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQ------EFKKRDAQVIADMEAQVHKLRE 735
Cdd:pfam01576 543 LEEgkkrlQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQlvsnleKKQKKFDQMLAEEKAISARYAE 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 736 ELINVNSQ-RKQQLVELGLLRE-EEKQRATREHEIVVNKLKAESEKMKIElkKTHAAETEMTLEKANSKLKQIEKEYTQK 813
Cdd:pfam01576 623 ERDRAEAEaREKETRALSLARAlEEALEAKEELERTNKQLRAEMEDLVSS--KDDVGKNVHELERSKRALEQQVEEMKTQ 700
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 814 LaksSQIIAELQTTISS-LKEENSQQQLAA--ERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVrCAEKKLQ 890
Cdd:pfam01576 701 L---EELEDELQATEDAkLRLEVNMQALKAqfERDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAV-AAKKKLE 776
|
....*....
gi 194386662 891 H--KELESQ 897
Cdd:pfam01576 777 LdlKELEAQ 785
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
516-905 |
9.34e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 39.49 E-value: 9.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 516 LKQQLQESELQRKQQLRDQE-NKFQMEKSHLKHIYEEKAHDLQ-SELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQR 593
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEaANRQREKEKERYKRDREQWERQrRELESRVAELKEELRQSREKHEELEEKYKELSASSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 594 LQAQQADAALG--EFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREK---QSKEFLWQLEDIRQRYEQQIVELKleH 668
Cdd:pfam07888 112 ELSEEKDALLAqrAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKagaQRKEEEAERKQLQAKLQQTEEELR--S 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 669 EQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANM-EHENQIQEFKKRDAQVIADM-EAQVHKLREELINVNSQRKQ 746
Cdd:pfam07888 190 LSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRkEAENEALLEELRSLQERLNAsERKVEGLGEELSSMAAQRDR 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194386662 747 QLVELGLLREEEKQratreheiVVNKLKAESEKMKiELKKTHAAETEMTLEKAnsklkQIEKEYTQKLAkssqiiAELQT 826
Cdd:pfam07888 270 TQAELHQARLQAAQ--------LTLQLADASLALR-EGRARWAQERETLQQSA-----EADKDRIEKLS------AELQR 329
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 194386662 827 TISSLKEENSQqqlaaerrlqdvRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQMTYIRQ 905
Cdd:pfam07888 330 LEERLQEERME------------REKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQ 396
|
|
| |
