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Conserved domains on  [gi|193785074|dbj|BAG54227|]
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unnamed protein product [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5570 super family cl39259
Family of unknown function (DUF5570); This is a family of unknown function found in chordata. ...
 23-145 3.35e-79

Family of unknown function (DUF5570); This is a family of unknown function found in chordata. Family members contain a transmembrane region in the C-terminal and have been shown to be localized to the Golgi apparatus.


The actual alignment was detected with superfamily member pfam17731:

Pssm-ID: 465474  Cd Length: 123  Bit Score: 229.76  E-value: 3.35e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193785074   23 AISWELDNVLMPSPRIWPQVTPTGRSASVRSEGNTSSLWNFSAGQDVHAIVTRTCESVLSSAVYTHGCGCVRSATNITCQ 102
Cdd:pfam17731   1 AISWELDNVLMPSPRIWPQVTPTGRSASARSEGSTSSLWNFSAGQDVHAIVTRTCESVLSSAVYTHGCGCVRSATNITCQ 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 193785074  103 SSGQQRQAARQEEENSICKAHDSREGRLGYPLSAHQPGSGGPN 145
Cdd:pfam17731  81 SSGQQRQAARQEEENSICKAHDSREGRLGYPLSAHQPGSGGPN 123
 
Name Accession Description Interval E-value
DUF5570 pfam17731
Family of unknown function (DUF5570); This is a family of unknown function found in chordata. ...
 23-145 3.35e-79

Family of unknown function (DUF5570); This is a family of unknown function found in chordata. Family members contain a transmembrane region in the C-terminal and have been shown to be localized to the Golgi apparatus.


Pssm-ID: 465474  Cd Length: 123  Bit Score: 229.76  E-value: 3.35e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193785074   23 AISWELDNVLMPSPRIWPQVTPTGRSASVRSEGNTSSLWNFSAGQDVHAIVTRTCESVLSSAVYTHGCGCVRSATNITCQ 102
Cdd:pfam17731   1 AISWELDNVLMPSPRIWPQVTPTGRSASARSEGSTSSLWNFSAGQDVHAIVTRTCESVLSSAVYTHGCGCVRSATNITCQ 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 193785074  103 SSGQQRQAARQEEENSICKAHDSREGRLGYPLSAHQPGSGGPN 145
Cdd:pfam17731  81 SSGQQRQAARQEEENSICKAHDSREGRLGYPLSAHQPGSGGPN 123
 
Name Accession Description Interval E-value
DUF5570 pfam17731
Family of unknown function (DUF5570); This is a family of unknown function found in chordata. ...
 23-145 3.35e-79

Family of unknown function (DUF5570); This is a family of unknown function found in chordata. Family members contain a transmembrane region in the C-terminal and have been shown to be localized to the Golgi apparatus.


Pssm-ID: 465474  Cd Length: 123  Bit Score: 229.76  E-value: 3.35e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 193785074   23 AISWELDNVLMPSPRIWPQVTPTGRSASVRSEGNTSSLWNFSAGQDVHAIVTRTCESVLSSAVYTHGCGCVRSATNITCQ 102
Cdd:pfam17731   1 AISWELDNVLMPSPRIWPQVTPTGRSASARSEGSTSSLWNFSAGQDVHAIVTRTCESVLSSAVYTHGCGCVRSATNITCQ 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 193785074  103 SSGQQRQAARQEEENSICKAHDSREGRLGYPLSAHQPGSGGPN 145
Cdd:pfam17731  81 SSGQQRQAARQEEENSICKAHDSREGRLGYPLSAHQPGSGGPN 123
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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