NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|167832077|dbj|BAG08993|]
View 

conserved hypothetical protein [Finegoldia magna ATCC 29328]

Protein Classification

DUF3139 domain-containing protein( domain architecture ID 10568326)

DUF3139 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF3139 pfam11337
Protein of unknown function (DUF3139); This family of proteins with unknown function appears ...
 7-83 1.83e-21

Protein of unknown function (DUF3139); This family of proteins with unknown function appears to be restricted to Firmicutes.


:

Pssm-ID: 431823  Cd Length: 77  Bit Score: 81.63  E-value: 1.83e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 167832077    7 SIVKILLICLVAFVAIKWIIAVPVQRHYGYKKLYRYMDAQGIKEDNIKEIKAIKDYMKGNQVYRVQIKDPADFTLIY 83
Cdd:pfam11337   1 KKIKIILIILIILIVIGWVGHKPIQKYLGNKKLDKYLTEQGYKEDDIKSIKPKYDIKKGGYYYKVVFKDEPNLEYVY 77
 
Name Accession Description Interval E-value
DUF3139 pfam11337
Protein of unknown function (DUF3139); This family of proteins with unknown function appears ...
 7-83 1.83e-21

Protein of unknown function (DUF3139); This family of proteins with unknown function appears to be restricted to Firmicutes.


Pssm-ID: 431823  Cd Length: 77  Bit Score: 81.63  E-value: 1.83e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 167832077    7 SIVKILLICLVAFVAIKWIIAVPVQRHYGYKKLYRYMDAQGIKEDNIKEIKAIKDYMKGNQVYRVQIKDPADFTLIY 83
Cdd:pfam11337   1 KKIKIILIILIILIVIGWVGHKPIQKYLGNKKLDKYLTEQGYKEDDIKSIKPKYDIKKGGYYYKVVFKDEPNLEYVY 77
 
Name Accession Description Interval E-value
DUF3139 pfam11337
Protein of unknown function (DUF3139); This family of proteins with unknown function appears ...
 7-83 1.83e-21

Protein of unknown function (DUF3139); This family of proteins with unknown function appears to be restricted to Firmicutes.


Pssm-ID: 431823  Cd Length: 77  Bit Score: 81.63  E-value: 1.83e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 167832077    7 SIVKILLICLVAFVAIKWIIAVPVQRHYGYKKLYRYMDAQGIKEDNIKEIKAIKDYMKGNQVYRVQIKDPADFTLIY 83
Cdd:pfam11337   1 KKIKIILIILIILIVIGWVGHKPIQKYLGNKKLDKYLTEQGYKEDDIKSIKPKYDIKKGGYYYKVVFKDEPNLEYVY 77
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH