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Conserved domains on  [gi|110739111|dbj|BAF01472|]
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photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana]

Protein Classification

chlorophyll a-b binding protein( domain architecture ID 10010583)

chlorophyll a-b binding protein is a component of the light-harvesting complex (LHC) that functions as a light receptor; it captures and delivers excitation energy to photosystems with which it is closely associated

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 5-265 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


:

Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 542.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111   5 TMALSSPAFAGKAVK---PAASDVLGSGRVTMRKTVAKPKgPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTA 81
Cdd:PLN00025   1 AMALSSTAFAGQAALkppNELSRKVGNGRVTMRKTVAKAA-GSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111  82 GLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA 161
Cdd:PLN00025  80 GLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWA 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111 162 TQVILMGAVEGYRVAGdGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 241
Cdd:PLN00025 160 CQVVLMGAVEGYRVNG-GPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 238

                        250       260
                 ....*....|....*....|....
gi 110739111 242 LADHLADPVNNNAWAFATNFVPGK 265
Cdd:PLN00025 239 LADHLADPVANNAWAYATNFVPGK 262
 
Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 5-265 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 542.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111   5 TMALSSPAFAGKAVK---PAASDVLGSGRVTMRKTVAKPKgPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTA 81
Cdd:PLN00025   1 AMALSSTAFAGQAALkppNELSRKVGNGRVTMRKTVAKAA-GSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111  82 GLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA 161
Cdd:PLN00025  80 GLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWA 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111 162 TQVILMGAVEGYRVAGdGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 241
Cdd:PLN00025 160 CQVVLMGAVEGYRVNG-GPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 238

                        250       260
                 ....*....|....*....|....
gi 110739111 242 LADHLADPVNNNAWAFATNFVPGK 265
Cdd:PLN00025 239 LADHLADPVANNAWAYATNFVPGK 262
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
64-232 4.39e-62

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 192.52  E-value: 4.39e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111   64 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKfGEAVWFKAGSQIFsdggld 143
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGG-NEPVWFEAGAVAL------ 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111  144 ylgnpslvHAQSILAI-WATQVILMGAVEGYRVAG--DGPLGEAEDLLYPGG-SFDPLGLAT-DPEAFAELKVKELKNGR 218
Cdd:pfam00504  74 --------HAQSVPTLlALQILLLMGFLELARWQGgkAPGLGGGGDRGYPGGfGFDPLGLAKkDPETLAELKLKELKNGR 145

                         170
                  ....*....|....
gi 110739111  219 LAMFSMFGFFVQAI 232
Cdd:pfam00504 146 LAMIAFLGFFVQEL 159
 
Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 5-265 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 542.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111   5 TMALSSPAFAGKAVK---PAASDVLGSGRVTMRKTVAKPKgPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTA 81
Cdd:PLN00025   1 AMALSSTAFAGQAALkppNELSRKVGNGRVTMRKTVAKAA-GSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWDTA 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111  82 GLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWA 161
Cdd:PLN00025  80 GLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWA 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111 162 TQVILMGAVEGYRVAGdGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 241
Cdd:PLN00025 160 CQVVLMGAVEGYRVNG-GPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 238

                        250       260
                 ....*....|....*....|....
gi 110739111 242 LADHLADPVNNNAWAFATNFVPGK 265
Cdd:PLN00025 239 LADHLADPVANNAWAYATNFVPGK 262
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 46-256 9.78e-75

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 230.46  E-value: 9.78e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111  46 SPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNG-VKF 124
Cdd:PLN00171 101 SFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGaVHF 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111 125 GEAVWFKAGSQIFSDGGLDYLGNPSL--VHAQSILAIWATQVILMGAVEGYRVAGD---GPLG--EAEDLLYPGGS-FDP 196
Cdd:PLN00171 181 AEPVWWRVGYAKLQGDTLDYLGIPGLhiAGSQGVIVIAICQALLMVGPEYARYCGIealEPLGiyLPGDINYPGGAlFDP 260

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111 197 LGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA 256
Cdd:PLN00171 261 LGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLS 320
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
64-232 4.39e-62

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 192.52  E-value: 4.39e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111   64 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKfGEAVWFKAGSQIFsdggld 143
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGG-NEPVWFEAGAVAL------ 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111  144 ylgnpslvHAQSILAI-WATQVILMGAVEGYRVAG--DGPLGEAEDLLYPGG-SFDPLGLAT-DPEAFAELKVKELKNGR 218
Cdd:pfam00504  74 --------HAQSVPTLlALQILLLMGFLELARWQGgkAPGLGGGGDRGYPGGfGFDPLGLAKkDPETLAELKLKELKNGR 145

                         170
                  ....*....|....
gi 110739111  219 LAMFSMFGFFVQAI 232
Cdd:pfam00504 146 LAMIAFLGFFVQEL 159
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 3-253 2.21e-47

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 158.48  E-value: 2.21e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111   3 SSTMALSSPAFAGKAVKPAASDvLGSGRVTMRKTVAKPKGPSGSPWYGSDrvkylgpfsgEPPSYLTGEFPGDYGWDTAG 82
Cdd:PLN00048   1 TSGVQTARRALSSSAARSSSAK-KARFVVRAEATPPAKQGADRQLWFASK----------QSLSYLDGTLPGDFGFDPLG 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111  83 LSaDPET---FARNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEA--VWFKAGSqIFSDGGLDYLGNPslvhaq 154
Cdd:PLN00048  70 LS-DPEGaggFIEPQWLaygEVINGRFAMLGAAGAIAPEILGKAGLIPQETalPWFQSGV-IPPAGTYDYWADP------ 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111 155 siLAIWATQVILMGAVEGYRV---AGDGPLGEAE------------DLLYPGGS-FDPLGLATDPEAFAELKVKELKNGR 218
Cdd:PLN00048 142 --YTLFVLEMALMGFAEHRRAqdyYKPGSMGKQYflglekglggsgNPAYPGGPfFNPLGFGKDEKSMKELKLKEVKNGR 219

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 110739111 219 LAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
Cdd:PLN00048 220 LAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNN 254
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 4-253 1.31e-46

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 155.96  E-value: 1.31e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111   4 STMALSSPAFAGKAVKPAASdvlGSGRVTMrktvakpkgpsGSPWygsdrvkylgpFSGEP-PSYLTGEFPGDYGWDTAG 82
Cdd:PLN00099  17 SLLSSSKSKFASSVPLPNAN---GSSRVTM-----------SADW-----------MPGQPrPPYLDGSAPGDFGFDPLR 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111  83 LSADPETFARNRELEVIHSRWAMLGALGCVFPELLarngvkfGEAVWFKAGSQIFSDGG-LDYLGNPslVHAQSILAIWA 161
Cdd:PLN00099  72 LGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVKAQEWAAIPGGqATYLGNP--VPWGTLPTILA 142

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111 162 TQVILMGAVEGYRVAGDGPlgeaEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLE 240
Cdd:PLN00099 143 IEFLAIAFVEHQRSMEKDP----EKKKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVqQSAYPGTGPLE 218

                        250
                 ....*....|...
gi 110739111 241 NLADHLADPVNNN 253
Cdd:PLN00099 219 NLATHLADPWHNN 231
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 63-253 1.90e-44

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 150.41  E-value: 1.90e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111  63 EPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKfGEAVWFKAGSQIFsdggl 142
Cdd:PLN00147  53 DPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIR-NLPVWYEAGAVKF----- 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111 143 DYlgnpslvhaQSILAIWATQVILMGAVEGYRV---------AGDGPLGEAEDLL------YPGGS-FDPLGLATDPEAF 206
Cdd:PLN00147 127 EF---------ASTRTLFVVQLLLMGFAETKRYmdfvspgsqAKEGSFFGLEAALeglepgYPGGPlFNPLGLAKDIENA 197

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 110739111 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
Cdd:PLN00147 198 HDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKT 244
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 4-250 1.21e-40

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 141.47  E-value: 1.21e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111   4 STMALSSPAFAGKAVKPAASdvlGSGRVTMR-----KTVAKPKGPSGSPWYGSDRVKYlgpFSG-EPPSYLTGEFPGDYG 77
Cdd:PLN00187   1 TAAAAAASSFMGTRVPDVAS---NSGRIVARfgfgkKKKAAKKAKKKSSKVGADRPLW---FPGaKAPEWLDGSLVGDYG 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111  78 WDTAGLSADPE-----------TFARN--------------------------------RELEVIHSRWAMLGALGCVFP 114
Cdd:PLN00187  75 FDPFGLGKPAEylqfdldsldqNLAKNlagdvigtrteaseikstpfqpysevfglqrfRECELIHGRWAMLATLGALSV 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111 115 ELLArnGVkfgeaVWFKAGSQIFSDGGlDYLGNPsLVHAQSILaIWaTQVILMGAVEGYRVAGDGPlgeaEDLLYPGGS- 193
Cdd:PLN00187 155 EALT--GV-----TWQDAGKVELVDGS-SYLGQP-LPFSITTL-IW-IEVLVIGYIEFQRNAELDP----EKRLYPGGKf 219

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 110739111 194 FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 250
Cdd:PLN00187 220 FDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 276
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 64-253 1.41e-39

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 137.83  E-value: 1.41e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111  64 PPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKfGEAVWFKAGS-QIFsdggl 142
Cdd:PLN00097  53 AAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMA-DLPNWIDAAKwDGY----- 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111 143 dYLGNPSLVHAQSILAIWA-----TQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNG 217
Cdd:PLN00097 127 -WAGAGPLFFIQMAMFNWAeirrwQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGLFDKFGWAKDEKKAAELKLKEIANG 205

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 110739111 218 RLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
Cdd:PLN00097 206 RLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNG 241
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 1-260 8.57e-38

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 133.88  E-value: 8.57e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111   1 MASSTMALSSPAFAGKAVKPAASDVLGSG-RVTMRK----TVAKPKGPSGSPWYgsdrvkylgPFSgEPPSYLTGEFPGD 75
Cdd:PLN00098  13 LTLSTRRVPQKALRRPIVASQSGTGGRMKvRLNATKggvsSVCEPLPPDRPLWF---------PGS-SPPEWLDGSLPGD 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111  76 YGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGvkFGEAV-WFKAGSQifsdgglDYLGNPSlvhaq 154
Cdd:PLN00098  83 FGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLG--FIENFsWYDAGAR-------EYFADPT----- 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111 155 silAIWATQVILMGAVEGYRVAGDGPLGEAE-------------DLLYPGGS-FDPLGLAT-DPEAFAELKVKELKNGRL 219
Cdd:PLN00098 149 ---TLFVVQMVLMGWAEGRRWADLIKPGCVDiepklpnktnpkpDVGYPGGLwFDPMMWGRgSPEPVMVLRTKEIKNGRL 225

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 110739111 220 AMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATN 260
Cdd:PLN00098 226 AMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTS 266
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 1-253 4.41e-36

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 128.45  E-value: 4.41e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111   1 MASSTMAlsspAFAGKAVKPAAsdvlgsGRVTMRKTVAKPKGPSGSPWYGSdrvkylgpfsGEPPSYLTGEFPGDYGWDT 80
Cdd:PLN00100   1 MASLTTA----SAGANRVRVSA------GVSTTRRPRVRVAARARPMWYPG----------ATAPKYLDGTMAGDYGFDP 60

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111  81 AGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLarngvkfGEAVWFKAGSQIFsdgGLDylgNPSLVhaqsilaiw 160
Cdd:PLN00100  61 LRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAV-------GLPKFWEAGAEKY---GLD---LQTLV--------- 118

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111 161 ATQVILMGAVEGYRVAGDGPLGEAEDL-LYPggsFDPLGLATDpeafaELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 239
Cdd:PLN00100 119 LIQVVVMAVLEAARYRGFMKTGESGVLsFFP---FDPTGMDSP-----EMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPL 190

                        250
                 ....*....|....
gi 110739111 240 ENLADHLADPVNNN 253
Cdd:PLN00100 191 EGLKAHMANPGHVN 204
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 1-252 3.33e-33

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 121.17  E-value: 3.33e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111   1 MASSTMALSSPAFAGKAVKPAAsdVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKylgpfsGE------PPSYLTGEFPG 74
Cdd:PLN00101   1 MATVTTQASAAVFRPCSSKSRF--LSGSSSKLNRELSFKPMPSSATRSFKVEAKK------GEwlpglaSPGYLNGSLPG 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111  75 DYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVkFGEAVWFKAGSQifsdgglDYLGNPSlvhaq 154
Cdd:PLN00101  73 DNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS----- 139

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111 155 silAIWATQVILMGAVEGYR---VAGDGPLGE----------AEDLLYPGGSFDPLGLATDPEAfaelKVKELKNGRLAM 221
Cdd:PLN00101 140 ---TLFVIEFILFHYVEIRRwqdIKNPGSVNQdpifkqyslpPNEVGYPGGIFNPLNFAPTEEA----KEKELANGRLAM 212

                        250       260       270
                 ....*....|....*....|....*....|.
gi 110739111 222 FSMFGFFVQAIVTGKGPLENLADHLADPVNN 252
Cdd:PLN00101 213 LAFLGFVVQHNVTGKGPFENLLQHLSDPWHN 243
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 7-242 2.03e-19

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 84.60  E-value: 2.03e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111   7 ALSSPAFAGKAVKPAASDVLGSGRVTMRK--TVAKPKGPSGSpWYGSdrVKYLGPFSGepPSYLTGEFPGDYGWDTAGLS 84
Cdd:PLN00170  12 GLGSSFLTGGKRSLALLVGTGAAKVGARTllVVAAAAQPKKS-WIPA--VKGGGNLVD--PEWLDGSLPGDYGFDPLGLG 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111  85 ADPETFARNRELEVIHSRWAMLGALGCVFPEllARNGVKfgeavWFKAGSQifsdggldylgnPSLVHAQSILAIWATQV 164
Cdd:PLN00170  87 KDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGAD------------PGAIAPFSFGSLLGTQL 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111 165 ILMGAVEGYR-----------VAGDGPLGE-AEDLL-------YPGGS-FDPLGLA---------TDPEAFAELKVKELK 215
Cdd:PLN00170 148 LLMGWVESKRwvdffnpdsqsVEWATPWSRtAENFAnatglqgYPGGKfFDPLGLAgtvkdgvyiPDFEKLERLKLAEIK 227

                        250       260
                 ....*....|....*....|....*..
gi 110739111 216 NGRLAMFSMFGFFVQAiVTGKGPLENL 242
Cdd:PLN00170 228 HARLAMVAMLIFYFEA-GQGKTPLGAL 253
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 58-237 5.52e-07

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 48.91  E-value: 5.52e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111  58 GPFSGEPPSYLTGEFPGDYGWDTAGLSAD-PETFARNRELEVIHSRWAMLGALGCVFPELLARNGvkfgEAVWFKAGSQI 136
Cdd:PLN00089  39 GAIGFAAKEFMFIGKTGSKKFDPLGLAEKvEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPG----EAYSFAAIPKT 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111 137 FsDGGLDYLGNPSLVHAQSILAIWATQV---ILMGAVEGYRVAGDGplgeaedllypggSFDPLGLATDPEAFAE-LKVK 212
Cdd:PLN00089 115 I-DAHDALLKSGAMIQIFAWIGFVDLAVsapAAAAAAEFDRTPGDF-------------GFDLLALYPKDAAKMEkKKDK 180

                        170       180
                 ....*....|....*....|....*
gi 110739111 213 ELKNGRLAMFSMFGFFVQAIVTGKG 237
Cdd:PLN00089 181 ELKNGRLAMVAIGGIATGSAITGHG 205
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
194-237 9.51e-07

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 47.69  E-value: 9.51e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 110739111  194 FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
Cdd:pfam00504  15 FDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLG 58
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 190-231 3.75e-04

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 40.50  E-value: 3.75e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 110739111 190 PGGSFDPLGLAT--DPEAFAELKVKELKNGRLAMFSMFGFFVQA 231
Cdd:PLN00120  43 PLGFFDPLGLVDdgDQEKFDRLRYVEIKHGRISMLAVVGYLVTE 86
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 78-239 5.81e-04

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 40.11  E-value: 5.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111  78 WDTAGL--SADPETFARNRELEVIHSRWAMLGALGcvfpELLARNGVKFGEAVWFKAGSqiFSD--GGLDYLGN-PSLVH 152
Cdd:PLN00120  47 FDPLGLvdDGDQEKFDRLRYVEIKHGRISMLAVVG----YLVTEAGIRLPGDIDYSGTS--FSDipNGFAALDAiPTAGL 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110739111 153 AQSILAIWATQVILMGAVEgyrvagdgplGEAEdllYPG----GSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFF 228
Cdd:PLN00120 121 LQILAFIGFLELAVMKDIT----------GEGE---FVGdfrnGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALM 187

                        170
                 ....*....|.
gi 110739111 229 VQAIVTGKGPL 239
Cdd:PLN00120 188 VHEQLGVELPI 198
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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