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Conserved domains on  [gi|110736622|dbj|BAF00275|]
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predicted GPI-anchored protein [Arabidopsis thaliana]

Protein Classification

early nodulin-like family protein( domain architecture ID 10181143)

early nodulin-like family protein belongs to the phytocyanin-like group of blue copper proteins from the cupredoxin superfamily, and may be involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OsENODL1_like cd11019
Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early ...
 28-129 1.83e-60

Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early nodulin-like protein (OsENODL1) from Oryza sativa and similar proteins. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Phytocyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. OsENODL1 expression occurs specifically at the late developmental stage of the seeds. Members of this subgroup appear to have lost the T1 copper binding site.


:

Pssm-ID: 259905  Cd Length: 103  Bit Score: 184.01  E-value: 1.83e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110736622  28 REFTVGGATGWTVP-SGSQVYSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYDSCNTDSPTAKFADGKTSVTLNHSG 106
Cdd:cd11019    1 REFKVGGKDGWKVPpSASESYNQWAERNRFQVGDSLVFKYDKGNDSVLEVTKEDYDSCNTSSPIARFNDGNTKFTLDRSG 80

                         90       100
                 ....*....|....*....|...
gi 110736622 107 PYYFISGNKDNCKKNEKLVVIVM 129
Cdd:cd11019   81 PFYFISGAPGHCEKGQKLIVVVM 103
rad23 super family cl36702
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 118-178 1.98e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


The actual alignment was detected with superfamily member TIGR00601:

Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 38.34  E-value: 1.98e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 110736622  118 CKKNEKLVVIVMADRSGNKNTASSPPSPAPAPSGESAPSPPVSGTFEMTPAPTPTTSEDTP 178
Cdd:TIGR00601  62 YKIKEKDFVVVMVSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSP 122
 
Name Accession Description Interval E-value
OsENODL1_like cd11019
Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early ...
 28-129 1.83e-60

Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early nodulin-like protein (OsENODL1) from Oryza sativa and similar proteins. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Phytocyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. OsENODL1 expression occurs specifically at the late developmental stage of the seeds. Members of this subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259905  Cd Length: 103  Bit Score: 184.01  E-value: 1.83e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110736622  28 REFTVGGATGWTVP-SGSQVYSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYDSCNTDSPTAKFADGKTSVTLNHSG 106
Cdd:cd11019    1 REFKVGGKDGWKVPpSASESYNQWAERNRFQVGDSLVFKYDKGNDSVLEVTKEDYDSCNTSSPIARFNDGNTKFTLDRSG 80

                         90       100
                 ....*....|....*....|...
gi 110736622 107 PYYFISGNKDNCKKNEKLVVIVM 129
Cdd:cd11019   81 PFYFISGAPGHCEKGQKLIVVVM 103
Cu_bind_like pfam02298
Plastocyanin-like domain; This family represents a domain found in flowering plants related to ...
 38-120 2.11e-31

Plastocyanin-like domain; This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues.


Pssm-ID: 280462  Cd Length: 84  Bit Score: 109.36  E-value: 2.11e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110736622   38 WTVPSGSQvYSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYDSCNTDSPTAKFADGKTSVTLNHSGPYYFISGNKDN 117
Cdd:pfam02298   1 WTVNAESD-YTTWAQGKTFRVGDTLVFKYDSDFHNVVEVTKADYESCDTSKPIRNYTTGSDKVTLTKPGPNYFICGVPGH 79


                  ...
gi 110736622  118 CKK 120
Cdd:pfam02298  80 CKF 82
PLN03148 PLN03148
Blue copper-like protein; Provisional
 15-128 5.25e-15

Blue copper-like protein; Provisional


Pssm-ID: 178693  Cd Length: 167  Bit Score: 69.52  E-value: 5.25e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110736622  15 LLCF--LMIVDRAYAREFTVGGATGWTvPSGSqvYSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYDSCNTDSPTAK 92
Cdd:PLN03148   6 LFCFfaLFSASATTATDHIVGANKGWN-PGIN--YTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGN 82

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 110736622  93 FADGKTSVTLNHSGPYYFISGNkDNCKKNEKLVVIV 128
Cdd:PLN03148  83 WTSGKDFIPLNKAKRYYFICGN-GQCFNGMKVTILV 117
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 118-178 1.98e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 38.34  E-value: 1.98e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 110736622  118 CKKNEKLVVIVMADRSGNKNTASSPPSPAPAPSGESAPSPPVSGTFEMTPAPTPTTSEDTP 178
Cdd:TIGR00601  62 YKIKEKDFVVVMVSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSP 122
 
Name Accession Description Interval E-value
OsENODL1_like cd11019
Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early ...
 28-129 1.83e-60

Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early nodulin-like protein (OsENODL1) from Oryza sativa and similar proteins. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Phytocyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. OsENODL1 expression occurs specifically at the late developmental stage of the seeds. Members of this subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259905  Cd Length: 103  Bit Score: 184.01  E-value: 1.83e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110736622  28 REFTVGGATGWTVP-SGSQVYSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYDSCNTDSPTAKFADGKTSVTLNHSG 106
Cdd:cd11019    1 REFKVGGKDGWKVPpSASESYNQWAERNRFQVGDSLVFKYDKGNDSVLEVTKEDYDSCNTSSPIARFNDGNTKFTLDRSG 80

                         90       100
                 ....*....|....*....|...
gi 110736622 107 PYYFISGNKDNCKKNEKLVVIVM 129
Cdd:cd11019   81 PFYFISGAPGHCEKGQKLIVVVM 103
Phytocyanin cd04216
Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I ...
 28-128 7.61e-37

Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Stellacyanin appears to be associated with the plant cell wall; it may be involved in oxidative reactions to build polymeric material making up the cell wall. Plantacyanin is shown to play a role in reproduction in Arabidopsis. Plantacyanins may also be stress-related proteins and may be involved in plant defense responses. The early nodulin-like protein (OsENODL1) from Oryza sativa is expressed specifically at the late developmental stage of the seeds.


Pssm-ID: 259878 [Multi-domain]  Cd Length: 98  Bit Score: 123.91  E-value: 7.61e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110736622  28 REFTVGGATGWTVPSGsqvYSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYDSCNTDSPTAKFADGKTSVTLNHSGP 107
Cdd:cd04216    1 TDYTVGDSNGWDLPVN---YTAWASGKTFRVGDSLVFNYNAGAHSVVEVNEADYDSCDTSNPINTYTSGNDSVTLTKPGT 77

                         90       100
                 ....*....|....*....|.
gi 110736622 108 YYFISGNKDNCKKNEKLVVIV 128
Cdd:cd04216   78 RYFICGVPGHCQSGMKLAINV 98
Cu_bind_like pfam02298
Plastocyanin-like domain; This family represents a domain found in flowering plants related to ...
 38-120 2.11e-31

Plastocyanin-like domain; This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues.


Pssm-ID: 280462  Cd Length: 84  Bit Score: 109.36  E-value: 2.11e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110736622   38 WTVPSGSQvYSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYDSCNTDSPTAKFADGKTSVTLNHSGPYYFISGNKDN 117
Cdd:pfam02298   1 WTVNAESD-YTTWAQGKTFRVGDTLVFKYDSDFHNVVEVTKADYESCDTSKPIRNYTTGSDKVTLTKPGPNYFICGVPGH 79


                  ...
gi 110736622  118 CKK 120
Cdd:pfam02298  80 CKF 82
Stellacyanin cd13920
Stellacyanin is a subclass of phytocyanins, a plant type I copper protein; Stellacyanin is a ...
 29-128 1.87e-30

Stellacyanin is a subclass of phytocyanins, a plant type I copper protein; Stellacyanin is a subclass of the phytocyanins, a ubiquitous family of plant cupredoxins. Stellacyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The copper is tetrahedrally coordinated by a cysteine, 2 histidines, and a glutamine residue. The glutamine residue substitutes for a methione ligand typically found in other blue copper proteins. The exact function of stellacyanin is unknown. However, stellacyanin appears to be associated with the plant cell wall; it may be involved in oxidative reactions to build polymeric material making up the cell wall.


Pssm-ID: 259987 [Multi-domain]  Cd Length: 101  Bit Score: 107.40  E-value: 1.87e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110736622  29 EFTVGGATGWTVPSGSQVYSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYDSCNTDSPTAKFADGKTSVTLNHSGPY 108
Cdd:cd13920    2 DHIVGGSLGWSIPPNASFYTDWAANRTFRVGDSLVFNFEAGVHNVVEVSKEEYDNCTTTNPIKVFTTGPVIITLNETGTR 81

                         90       100
                 ....*....|....*....|
gi 110736622 109 YFISGNKDNCKKNEKLVVIV 128
Cdd:cd13920   82 YFICTVGNHCSLGQKVSINV 101
Mavicyanin cd11014
Mavicyanin is a subclass of phytocyanins, a plant blue copper protein; Mavicyanin is a ...
 30-129 4.97e-24

Mavicyanin is a subclass of phytocyanins, a plant blue copper protein; Mavicyanin is a glycosylated protein isolated from Cucurbita pepo medullosa (zucchini) peelings. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Mavicyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The copper is tetrahedrally coordinated by a cysteine, 2 histidines, and a glutamine residue, like in the case of stellacyanin. The biological roles of mavicyanin have not been elucidated yet.


Pssm-ID: 259900  Cd Length: 101  Bit Score: 90.92  E-value: 4.97e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110736622  30 FTVGGATGWTVPSgSQVYSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYDSCNTDSPTAKFADGKTSVTLNHSGPYY 109
Cdd:cd11014    3 YKVGDSDGWTVYD-SDYYYKWSSSKTFHVGDSLIFQYNKEFHDVTEVTGEEFESCNSTSPIAVYNTGHDIIKLTKPGQYY 81

                         90       100
                 ....*....|....*....|
gi 110736622 110 FISGNKDNCKKNEKLVVIVM 129
Cdd:cd11014   82 FICGVPGHCDSGQKLQVNVT 101
Plantacyanin cd11013
Plantacyanin is a subclass of phytocyanins, plant type I copper proteins; Plantacyanins belong ...
 28-128 2.25e-16

Plantacyanin is a subclass of phytocyanins, plant type I copper proteins; Plantacyanins belong to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Plantacyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The exact function of plantacyanin is unknown. However plantacyanin is shown to play a role in reproduction in Arabidopsis. Plantacyanins may also be stress-related proteins and be involved in plant defense responses.


Pssm-ID: 259899  Cd Length: 95  Bit Score: 71.23  E-value: 2.25e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110736622  28 REFTVGGATGWTVPSGSqvysqWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYDSCNTDSPTAKFADGKTSVTLNhSGP 107
Cdd:cd11013    1 ATYVVGDSIGWTFGVVG-----WPNGKTFRAGDVLVFNYDPSAHNVVVVDEGGYRTCKAPPGAIVYTSGDDKITLP-KGV 74

                         90       100
                 ....*....|....*....|.
gi 110736622 108 YYFISGNKDNCKKNEKLVVIV 128
Cdd:cd11013   75 NYFICSFPGHCTSGMKIAVTA 95
Phytocyanin_like_1 cd11017
A subclass of phytocyanins, plant blue or type I copper proteins; Phytocyanins are plant blue ...
 47-128 9.97e-16

A subclass of phytocyanins, plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Members of this unknown subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259903  Cd Length: 99  Bit Score: 69.34  E-value: 9.97e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110736622  47 YSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYDSCNTDSPTAKFADGKTSV-TLNHSGPYYFISGNKdNCKKNEKLV 125
Cdd:cd11017   18 YTDWAKMHGFYSGDWLVFRYQRGRHNVVQVNETGYDNCDASNPISNYSSGGRDIfQLNETKRYYFICGRG-YCYGGMKLA 96


                 ...
gi 110736622 126 VIV 128
Cdd:cd11017   97 ITV 99
PLN03148 PLN03148
Blue copper-like protein; Provisional
 15-128 5.25e-15

Blue copper-like protein; Provisional


Pssm-ID: 178693  Cd Length: 167  Bit Score: 69.52  E-value: 5.25e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 110736622  15 LLCF--LMIVDRAYAREFTVGGATGWTvPSGSqvYSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYDSCNTDSPTAK 92
Cdd:PLN03148   6 LFCFfaLFSASATTATDHIVGANKGWN-PGIN--YTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGN 82

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 110736622  93 FADGKTSVTLNHSGPYYFISGNkDNCKKNEKLVVIV 128
Cdd:PLN03148  83 WTSGKDFIPLNKAKRYYFICGN-GQCFNGMKVTILV 117
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 118-178 1.98e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 38.34  E-value: 1.98e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 110736622  118 CKKNEKLVVIVMADRSGNKNTASSPPSPAPAPSGESAPSPPVSGTFEMTPAPTPTTSEDTP 178
Cdd:TIGR00601  62 YKIKEKDFVVVMVSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSP 122
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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