|
Name |
Accession |
Description |
Interval |
E-value |
| Filament |
pfam00038 |
Intermediate filament protein; |
56-342 |
1.78e-11 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 64.17 E-value: 1.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 56 EDLERLEARFQQCVQAVSQLEEERDQLIHELVLLREPALQEVQQVHQ-----------DILAAYKLHAQAELERDGLREE 124
Cdd:pfam00038 4 EQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAEPSRLYSlyekeiedlrrQLDTLTVERARLQLELDNLRLA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 125 IRTVKQKLFKVTKECVAYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRD---------ACQKQKEQLQQQLEAP 195
Cdd:pfam00038 84 AEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKnheeevrelQAQVSDTQVNVEMDAA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 196 PTQSDGHFLQESRRlstQFENLMAESRQGLEEEYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQN 275
Cdd:pfam00038 164 RKLDLTSALAEIRA---QYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQK 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 74185008 276 RNLEDQITLVRQKRDEEVQQYREQLEEMEERQRQLRSGVQVQQQKNKEMERLRMSLAEELSTYKAML 342
Cdd:pfam00038 241 ASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLL 307
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
56-333 |
1.44e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 1.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 56 EDLERLEARFQQCVQAVSQLEEERDQLIHELVLLRepalQEVQQVHQDILAAYKLHAQAELERDGLREEIRTVKQKLFKV 135
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLR----KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 136 TKECVAYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRdacqkqkeqlqqqleapptqsdghflQESRRLSTQFE 215
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR--------------------------EALDELRAELT 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 216 NLMAESRQGLEEeyepqLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQITLVRQKRDEEVQQ 295
Cdd:TIGR02168 814 LLNEEAANLRER-----LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
250 260 270
....*....|....*....|....*....|....*...
gi 74185008 296 YREQLEEMEERQRQLRSGVQVQQQKNKEMERLRMSLAE 333
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQ 926
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
95-343 |
1.19e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 95 QEVQQVHQDILAAYKLHAQAELERDGLREEIRTVKQKLFKVTKECVAYQYQLECRQQDVAQfadcreaLTTRAAQLSEEL 174
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE-------LEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 175 TQLRDACQKQKEQLQQQLEAPPTQ---SDGHFLQESRRLStqfenlmaesrqgLEEEYEPQLLRLLERKEAGTKALQDTQ 251
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLAlllSPEDFLDAVRRLQ-------------YLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 252 AEIQEMREALRPLEAEARQLQLQNRNLEDQITLVRQKRDEEVQQYREQLEEMEERQRQLRSgvQVQQQKNKEMERLRMSL 331
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA--LIARLEAEAAAAAERTP 244
|
250
....*....|..
gi 74185008 332 AEELSTYKAMLP 343
Cdd:COG4942 245 AAGFAALKGKLP 256
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
109-334 |
2.41e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 2.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 109 KLHAQAELERD--GLREEIRTVKQKLFkvTKECVAYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRDACQKQKE 186
Cdd:TIGR02168 204 SLERQAEKAERykELKAELRELELALL--VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 187 QLQQQL----EAPPTQSDghFLQESRRLSTQFENLMAESRQGLE--EEYEPQLLRLLERKEAGTKALQDTQAEIQEMREA 260
Cdd:TIGR02168 282 EIEELQkelyALANEISR--LEQQKQILRERLANLERQLEELEAqlEELESKLDELAEELAELEEKLEELKEELESLEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 261 LRPLEAEARQLQLQNRNLEDQITLVRQKRDE----------EVQQYREQLEEMEERQRQLRSGVQVQQQK--NKEMERLR 328
Cdd:TIGR02168 360 LEELEAELEELESRLEELEEQLETLRSKVAQlelqiaslnnEIERLEARLERLEDRRERLQQEIEELLKKleEAELKELQ 439
|
....*.
gi 74185008 329 MSLAEE 334
Cdd:TIGR02168 440 AELEEL 445
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
60-347 |
6.85e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 6.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 60 RLEARFQQCVQAVSQLEEERDQLIHELVLLRepalQEVQQVHQDILAAYKLHAQAELERDGLREEIRTVKQKLFKVtkec 139
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIE----NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL---- 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 140 vayQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRDACQKQKEQLQQQLEAPPTQSDGHFLQESRRLSTQFENLMA 219
Cdd:TIGR02169 743 ---EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQ 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 220 E-SRQGLEEEYEPQLLRLLERKEAGTKA-LQDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQITLVRQKRDEEVQQYR 297
Cdd:TIGR02169 820 KlNRLTLEKEYLEKEIQELQEQRIDLKEqIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 74185008 298 eqleEMEERQRQLRSGVQVQQQKNKEMERLRMSLAEELSTYKAMLPKSLE 347
Cdd:TIGR02169 900 ----ELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE 945
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
56-342 |
8.01e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 8.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 56 EDLERLEARFQQCVQAVSQLEEERDQLIHELVLLREPALQEVQQVHQDILAAYKLHAQAELERDGLREEIRTVKQKLFKV 135
Cdd:TIGR02169 184 ENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISEL 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 136 TKECVAYQYQLECRQQDVAQFADCRE-ALTTRAAQLSEELTQLRDACQKQKEQLQ--QQLEAPPTQSDGHFLQESRRLST 212
Cdd:TIGR02169 264 EKRLEEIEQLLEELNKKIKDLGEEEQlRVKEKIGELEAEIASLERSIAEKERELEdaEERLAKLEAEIDKLLAEIEELER 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 213 QFENLMAESRQgLEEEY---EPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQitlvRQKR 289
Cdd:TIGR02169 344 EIEEERKRRDK-LTEEYaelKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE----LQRL 418
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 74185008 290 DEEVQQYREQLEEMEERQRQLRSGVQVQQQKNKEMERLRMSLAEELSTYKAML 342
Cdd:TIGR02169 419 SEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
109-337 |
1.09e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 109 KLHAQAE--LERDGLREEIRTVKQKLfkvtkecvaYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRDACQKQKe 186
Cdd:COG1196 204 PLERQAEkaERYRELKEELKELEAEL---------LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELR- 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 187 qlqqqleapptqsdghflQESRRLSTQFENLMAESRQGLEE--EYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRPL 264
Cdd:COG1196 274 ------------------LELEELELELEEAQAEEYELLAElaRLEQDIARLEERRRELEERLEELEEELAELEEELEEL 335
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 74185008 265 EAEARQLQLQNRNLEDQITLVRQKRDEEVQQYREQLEEMEERQRQLRSGVQVQQQKNKEMERLRMSLAEELST 337
Cdd:COG1196 336 EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA 408
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
220-340 |
1.87e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 1.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 220 ESRQGLEEEYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQITLVRQKRDEEVQQYREQ 299
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 74185008 300 LEEMEERQRQLRSGVQVQQQKNKEMERLRMSLAEELSTYKA 340
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
58-302 |
4.29e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 4.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 58 LERLEARFQQCVQAVSQLEEERDQLIHELvllrePALQEVQQVHQDILAayklHAQAELERDGLREEIRTVKQKLFKVTK 137
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAEL-----DALQERREALQRLAE----YSWDEIDVASAEREIAELEAELERLDA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 138 ---ECVAYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRDACQKQKEQLQQQLEAPPTQS----DGHFLQES--- 207
Cdd:COG4913 683 ssdDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELrallEERFAAALgda 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 208 --RRLSTQFENLMA---ESRQGLEEEYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEA------EARQLQLQNR 276
Cdd:COG4913 763 veRELRENLEERIDalrARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEdglpeyEERFKELLNE 842
|
250 260
....*....|....*....|....*.
gi 74185008 277 NLEDQITLVRQKRDEEVQQYREQLEE 302
Cdd:COG4913 843 NSIEFVADLLSKLRRAIREIKERIDP 868
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
57-328 |
6.13e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 6.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 57 DLERLEARFQQCVQAVSQLEEERDQLIHELVLLREpalqEVQQVHQDILAAYKLHAQAELERDGLREEIRTVKQKLFKVT 136
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTA----ELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 137 KECVAYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRDACQKQKEQLQQQLEAPPTQSDGHFLQESRR--LSTQF 214
Cdd:TIGR02168 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLeeLEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 215 ENLMAESRQGLEEEY--EPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQ--NRNLEDQITLVRQKRd 290
Cdd:TIGR02168 382 ETLRSKVAQLELQIAslNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEelEEELEELQEELERLE- 460
|
250 260 270
....*....|....*....|....*....|....*...
gi 74185008 291 EEVQQYREQLEEMEERQRQLRSGVQVQQQKNKEMERLR 328
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
203-355 |
1.12e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 203 FLQESRRLSTQFENLMAESRQGLE--EEYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQNRNLED 280
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEklEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEA 323
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 74185008 281 QITLVRQKRD---EEVQQYREQLEEMEERQRQLRSGVQVQQQKNKEMERLRMSLAEELSTYKAMLPKSLEQADAPTSQ 355
Cdd:TIGR02168 324 QLEELESKLDelaEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
56-334 |
1.27e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 56 EDLERLEARFQQCVQAVSQLEEERDQLIHELVLLREPALQeVQQVHQDILAAYKLHAQAELERDGLREEIRTVKQKLFKV 135
Cdd:PRK04863 376 EQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQ-YQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEA 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 136 TKECVAYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQ--LRDACQKQKEQLQQQLEAPPTQSDGHFLQESRRLSTQ 213
Cdd:PRK04863 455 TEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWdvARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQR 534
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 214 FENLMAE--SRQGLEEEYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRpleAEARQLQLQNRNLEdQITLVRQKRDE 291
Cdd:PRK04863 535 AERLLAEfcKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALR---QQLEQLQARIQRLA-ARAPAWLAAQD 610
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 74185008 292 EVQQYREQLEEMEERQRQLRSGVQVQQQKNKEMERLRMSLAEE 334
Cdd:PRK04863 611 ALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAAR 653
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
74-349 |
1.38e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.69 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 74 QLEEERDQLIHELVLLR-EPALQEVQQVHQDILAAYKLHAQAELERDGLREEIRTVKQKLFKVTKECVAYQYQLECRQQD 152
Cdd:COG1196 217 ELKEELKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 153 VAQFADCREALTTRAAQLSEELTQLrdacqkqkeqlqqqleapptqsdghflQESRRLSTQFENLMAESRQGLEEEYEPQ 232
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEEL---------------------------EEELAELEEELEELEEELEELEEELEEA 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 233 LLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQL------QLQNRNLEDQITLVRQKRDEEVQQYREQLEEMEER 306
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELlealraAAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 74185008 307 QRQLRSGVQVQQQKNKEMERLRMSLAEELSTYKAMLPKSLEQA 349
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
56-315 |
1.92e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.43 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 56 EDLERLEARFQQCVQAVSQLEEERDQL----------IHELVLLREPALQEVQQVHQDILAAYKLHAQAELERDGLREEI 125
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELeaeieeleerLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 126 RTVKQKLFKVT--------------KECVAYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRDACQKQKEQLQQQ 191
Cdd:TIGR02168 813 TLLNEEAANLRerleslerriaateRRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 192 LEAPPTQSDGhfLQESRRLSTQFENLMAESRQGLEE---EYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEA 268
Cdd:TIGR02168 893 RSELEELSEE--LRELESKRSELRRELEELREKLAQlelRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA 970
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 74185008 269 RQLQLQNRNLEDQITLVRQKRDEEVQQYREQLEEMEERQRQLRSGVQ 315
Cdd:TIGR02168 971 RRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKE 1017
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
50-302 |
2.41e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 50 EDPLSVEDLERLEARFQQCVQAVSQLEEERDQLIHelvllrepaLQEVQQVHQDILAAYKLHAQAELERDGLREEIRTVK 129
Cdd:COG4913 219 EEPDTFEAADALVEHFDDLERAHEALEDAREQIEL---------LEPIRELAERYAAARERLAELEYLRAALRLWFAQRR 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 130 QKLfkvtkecvaYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRDACQKQKEQLQQQLEAPPTQSDGHfLQESRR 209
Cdd:COG4913 290 LEL---------LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERE-LEERER 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 210 LSTQFENLMA-------ESRQGLEEEYEpQLLRLLERKEAGTKALQDTQAE----IQEMREALRPLEAEARQLQLQNRNL 278
Cdd:COG4913 360 RRARLEALLAalglplpASAEEFAALRA-EAAALLEALEEELEALEEALAEaeaaLRDLRRELRELEAEIASLERRKSNI 438
|
250 260
....*....|....*....|....
gi 74185008 279 edqitlvrqkrDEEVQQYREQLEE 302
Cdd:COG4913 439 -----------PARLLALRDALAE 451
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
148-362 |
3.13e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.65 E-value: 3.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 148 CRQQDVAQFADCREALTTRAAQLSEELTQLRDACQKQKEQLQQQLEAPPTQSdghflQESRRLSTQFENLMAESRQGLEe 227
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS-----RQISALRKDLARLEAEVEQLEE- 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 228 eyepQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQITLVRQKRDE----------EVQQYR 297
Cdd:TIGR02168 748 ----RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDElraeltllneEAANLR 823
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 74185008 298 EQLEEMEERQRQLRSGVQVQQQKNKEMERLRMSLAEELSTYKAMLPKSLEQADAPTSQAGGVEAQ 362
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
236-348 |
4.91e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 38.61 E-value: 4.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 236 LLERKEAGTKALQDTQAEIQEMREALRPLEaeaRQLQLQNRNLEDQITLVRQKRDE---EVQQYREQLEEMEERQRQLRs 312
Cdd:PRK12704 59 LLEAKEEIHKLRNEFEKELRERRNELQKLE---KRLLQKEENLDRKLELLEKREEElekKEKELEQKQQELEKKEEELE- 134
|
90 100 110
....*....|....*....|....*....|....*..
gi 74185008 313 gvQVQQQKNKEMERLrMSL-AEELstyKAMLPKSLEQ 348
Cdd:PRK12704 135 --ELIEEQLQELERI-SGLtAEEA---KEILLEKVEE 165
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
227-334 |
5.22e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 38.69 E-value: 5.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 227 EEYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQlQNRNLEDQITLVRQKRDEEVQQYREQLEEMEER 306
Cdd:COG2433 409 TEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEAR-SEERREIRKDREISRLDREIERLERELEEERER 487
|
90 100
....*....|....*....|....*...
gi 74185008 307 QRQLRSgvqvqqqKNKEMERLRMSLAEE 334
Cdd:COG2433 488 IEELKR-------KLERLKELWKLEHSG 508
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
145-340 |
7.38e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 38.36 E-value: 7.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 145 QLECRQQDVAQFADCREALTTRAAQLSEE---LTQLRDACQKQKEQLQQQLEAPPTQsdghflQESRRLSTQFENLMAES 221
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAEldaLQERREALQRLAEYSWDEIDVASAE------REIAELEAELERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 222 rqgleeeyePQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQitlVRQKRDEEVQQYREQLE 301
Cdd:COG4913 685 ---------DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDR---LEAAEDLARLELRALLE 752
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 74185008 302 EM------EERQRQLRSGVQVQQQK-NKEMERLRMSLAEELSTYKA 340
Cdd:COG4913 753 ERfaaalgDAVERELRENLEERIDAlRARLNRAEEELERAMRAFNR 798
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
242-335 |
8.77e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 37.82 E-value: 8.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74185008 242 AGTKALQDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQITLVRQKRDEEVQQYREQLEEMEERQRQLRSGVQVQQQKN 321
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90
....*....|....
gi 74185008 322 KEMERLRMSLAEEL 335
Cdd:COG4942 97 AELEAQKEELAELL 110
|
|
| |
