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Conserved domains on  [gi|74210751|dbj|BAE25026|]
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unnamed protein product [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
EP400_N super family cl25813
E1A-binding protein p400, N-terminal; EP400_N is a family of eukaryote proteins. the exact ...
 1-451 3.49e-178

E1A-binding protein p400, N-terminal; EP400_N is a family of eukaryote proteins. the exact function of this domain is not known. This family is largely low-complexity residues.


The actual alignment was detected with superfamily member pfam15790:

Pssm-ID: 434938 [Multi-domain]  Cd Length: 489  Bit Score: 514.93  E-value: 3.49e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751     1 MHHGSGPQNVQHQLQRSRSFTGSEE----EQPAHPNLPPSPAAPFAPSASPSAPQSPGYQIqqLMSRSPVAGQNVNITLQ 76
Cdd:pfam15790   1 MHHGSGSQNVQRQLQRSKSVSGSEEqqqeQQPATVNHPQSPVTTFAPAASPSAPQSPNYQI--IMSRSPVTGQNVNITLQ 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751    77 NVGPVVGGNQQITLAPLPLPNPTSPGFQFGAQQRRFEHGSPSYIQVTSPMSQQVQTQSPTQPSPGPGQTLQnvRAGAPGP 156
Cdd:pfam15790  79 NVGQMVAGNQQITLTPLPLQSPASPGFQHSAPQWRFEHGSPSYIQVTSPLPQQVQPQSPTQHSPVPLQGVQ--RPGAPGT 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   157 GLGICSNSPTGgFVDASVLVRQISL-SPSSGGHFVFQEAPGLTQMAQG-AQVQLQHSGAPITVRERRLSQPHAQSGGTIH 234
Cdd:pfam15790 157 GLGVCGQSPTR-FVDASMLVRQISLgSPSGGGHFVYQDGTGLAQIAPGaGQVQLASPGTPGSVRERRLSQPHSQTGGTIH 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   235 HLGPQSPAAAGgTGLQPLASPNHITTASLPPQISSIIQGQliqqqqqvlqgqpMNRSLGFERTPGVLLPGVGGPSA-FGM 313
Cdd:pfam15790 236 HLGPQSPAAAG-AGLQTLGSPGHITTSNLPPQISSIIQGQ-------------LARPLGFEKTAQVVVAGAGGPAAsFGI 301

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   314 TSPPPPTSPSRTTMPPGLSSVPLTSMGSSG-MKKVPKKLEEIPPASQEMAQMRKQCLDYHYKEMEALKEVFKEYLIELFF 392
Cdd:pfam15790 302 PSSIPPTSPSRTSPPPGLSSNPLTSTGMSGsVKKVPKKLEEIAPATPEIAQLRKQCLDHHTKKMESLKEVFKEYLIELFF 381

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 74210751   393 LQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDIEEEEEEEEeeegKSEVINDEHQSLTG 451
Cdd:pfam15790 382 LQHLQGNMMDFLAFKKKHCVPLYTYLRQNDLDLEEEEEEEE----QSEVINDEVKVVTG 436
PAT1 super family cl37801
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 508-645 9.96e-06

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


The actual alignment was detected with superfamily member pfam09770:

Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 48.88  E-value: 9.96e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   508 PTVQGGMPPTPQATQltGQKQSQQQYDPSTGPPVQNAASLHTPPPQLPARLPPasvpatalPSTLQFSQQSQMVEASTQL 587
Cdd:pfam09770 212 QQPAPAPAQPPAAPP--AQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHP--------VTILQRPQSPQPDPAQPSI 281

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   588 QIPVKTQQLNAPIPAPLPSQ-LPAPSSQPA-QPALHVPMPGKAQMQTSQLSSQTQVLCGH 645
Cdd:pfam09770 282 QPQAQQFHQQPPPVPVQPTQiLQNPNRLSAaRVGYPQNPQPGVQPAPAHQAHRQQGSFGR 341
 
Name Accession Description Interval E-value
EP400_N pfam15790
E1A-binding protein p400, N-terminal; EP400_N is a family of eukaryote proteins. the exact ...
 1-451 3.49e-178

E1A-binding protein p400, N-terminal; EP400_N is a family of eukaryote proteins. the exact function of this domain is not known. This family is largely low-complexity residues.


Pssm-ID: 434938 [Multi-domain]  Cd Length: 489  Bit Score: 514.93  E-value: 3.49e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751     1 MHHGSGPQNVQHQLQRSRSFTGSEE----EQPAHPNLPPSPAAPFAPSASPSAPQSPGYQIqqLMSRSPVAGQNVNITLQ 76
Cdd:pfam15790   1 MHHGSGSQNVQRQLQRSKSVSGSEEqqqeQQPATVNHPQSPVTTFAPAASPSAPQSPNYQI--IMSRSPVTGQNVNITLQ 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751    77 NVGPVVGGNQQITLAPLPLPNPTSPGFQFGAQQRRFEHGSPSYIQVTSPMSQQVQTQSPTQPSPGPGQTLQnvRAGAPGP 156
Cdd:pfam15790  79 NVGQMVAGNQQITLTPLPLQSPASPGFQHSAPQWRFEHGSPSYIQVTSPLPQQVQPQSPTQHSPVPLQGVQ--RPGAPGT 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   157 GLGICSNSPTGgFVDASVLVRQISL-SPSSGGHFVFQEAPGLTQMAQG-AQVQLQHSGAPITVRERRLSQPHAQSGGTIH 234
Cdd:pfam15790 157 GLGVCGQSPTR-FVDASMLVRQISLgSPSGGGHFVYQDGTGLAQIAPGaGQVQLASPGTPGSVRERRLSQPHSQTGGTIH 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   235 HLGPQSPAAAGgTGLQPLASPNHITTASLPPQISSIIQGQliqqqqqvlqgqpMNRSLGFERTPGVLLPGVGGPSA-FGM 313
Cdd:pfam15790 236 HLGPQSPAAAG-AGLQTLGSPGHITTSNLPPQISSIIQGQ-------------LARPLGFEKTAQVVVAGAGGPAAsFGI 301

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   314 TSPPPPTSPSRTTMPPGLSSVPLTSMGSSG-MKKVPKKLEEIPPASQEMAQMRKQCLDYHYKEMEALKEVFKEYLIELFF 392
Cdd:pfam15790 302 PSSIPPTSPSRTSPPPGLSSNPLTSTGMSGsVKKVPKKLEEIAPATPEIAQLRKQCLDHHTKKMESLKEVFKEYLIELFF 381

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 74210751   393 LQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDIEEEEEEEEeeegKSEVINDEHQSLTG 451
Cdd:pfam15790 382 LQHLQGNMMDFLAFKKKHCVPLYTYLRQNDLDLEEEEEEEE----QSEVINDEVKVVTG 436
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 508-645 9.96e-06

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 48.88  E-value: 9.96e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   508 PTVQGGMPPTPQATQltGQKQSQQQYDPSTGPPVQNAASLHTPPPQLPARLPPasvpatalPSTLQFSQQSQMVEASTQL 587
Cdd:pfam09770 212 QQPAPAPAQPPAAPP--AQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHP--------VTILQRPQSPQPDPAQPSI 281

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   588 QIPVKTQQLNAPIPAPLPSQ-LPAPSSQPA-QPALHVPMPGKAQMQTSQLSSQTQVLCGH 645
Cdd:pfam09770 282 QPQAQQFHQQPPPVPVQPTQiLQNPNRLSAaRVGYPQNPQPGVQPAPAHQAHRQQGSFGR 341
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 513-646 1.46e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 1.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751  513 GMPPTPQATQLTGQKQSQQQYDPSTGPPVQNAASLHTPPPQLPARLPPASVPATALPSTLQFSQQSQMVEASTQLQIPVK 592
Cdd:PRK07764 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPS 463

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 74210751  593 TQQLNAPIPAPLPSQLPAPSSQPAQ-PALHVPMPgkAQMQTSQLSSQTQVLCGHW 646
Cdd:PRK07764 464 AQPAPAPAAAPEPTAAPAPAPPAAPaPAAAPAAP--AAPAAPAGADDAATLRERW 516
 
Name Accession Description Interval E-value
EP400_N pfam15790
E1A-binding protein p400, N-terminal; EP400_N is a family of eukaryote proteins. the exact ...
 1-451 3.49e-178

E1A-binding protein p400, N-terminal; EP400_N is a family of eukaryote proteins. the exact function of this domain is not known. This family is largely low-complexity residues.


Pssm-ID: 434938 [Multi-domain]  Cd Length: 489  Bit Score: 514.93  E-value: 3.49e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751     1 MHHGSGPQNVQHQLQRSRSFTGSEE----EQPAHPNLPPSPAAPFAPSASPSAPQSPGYQIqqLMSRSPVAGQNVNITLQ 76
Cdd:pfam15790   1 MHHGSGSQNVQRQLQRSKSVSGSEEqqqeQQPATVNHPQSPVTTFAPAASPSAPQSPNYQI--IMSRSPVTGQNVNITLQ 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751    77 NVGPVVGGNQQITLAPLPLPNPTSPGFQFGAQQRRFEHGSPSYIQVTSPMSQQVQTQSPTQPSPGPGQTLQnvRAGAPGP 156
Cdd:pfam15790  79 NVGQMVAGNQQITLTPLPLQSPASPGFQHSAPQWRFEHGSPSYIQVTSPLPQQVQPQSPTQHSPVPLQGVQ--RPGAPGT 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   157 GLGICSNSPTGgFVDASVLVRQISL-SPSSGGHFVFQEAPGLTQMAQG-AQVQLQHSGAPITVRERRLSQPHAQSGGTIH 234
Cdd:pfam15790 157 GLGVCGQSPTR-FVDASMLVRQISLgSPSGGGHFVYQDGTGLAQIAPGaGQVQLASPGTPGSVRERRLSQPHSQTGGTIH 235

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   235 HLGPQSPAAAGgTGLQPLASPNHITTASLPPQISSIIQGQliqqqqqvlqgqpMNRSLGFERTPGVLLPGVGGPSA-FGM 313
Cdd:pfam15790 236 HLGPQSPAAAG-AGLQTLGSPGHITTSNLPPQISSIIQGQ-------------LARPLGFEKTAQVVVAGAGGPAAsFGI 301

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   314 TSPPPPTSPSRTTMPPGLSSVPLTSMGSSG-MKKVPKKLEEIPPASQEMAQMRKQCLDYHYKEMEALKEVFKEYLIELFF 392
Cdd:pfam15790 302 PSSIPPTSPSRTSPPPGLSSNPLTSTGMSGsVKKVPKKLEEIAPATPEIAQLRKQCLDHHTKKMESLKEVFKEYLIELFF 381

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 74210751   393 LQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDIEEEEEEEEeeegKSEVINDEHQSLTG 451
Cdd:pfam15790 382 LQHLQGNMMDFLAFKKKHCVPLYTYLRQNDLDLEEEEEEEE----QSEVINDEVKVVTG 436
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 508-645 9.96e-06

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 48.88  E-value: 9.96e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   508 PTVQGGMPPTPQATQltGQKQSQQQYDPSTGPPVQNAASLHTPPPQLPARLPPasvpatalPSTLQFSQQSQMVEASTQL 587
Cdd:pfam09770 212 QQPAPAPAQPPAAPP--AQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHP--------VTILQRPQSPQPDPAQPSI 281

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   588 QIPVKTQQLNAPIPAPLPSQ-LPAPSSQPA-QPALHVPMPGKAQMQTSQLSSQTQVLCGH 645
Cdd:pfam09770 282 QPQAQQFHQQPPPVPVQPTQiLQNPNRLSAaRVGYPQNPQPGVQPAPAHQAHRQQGSFGR 341
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 501-642 1.96e-04

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 44.64  E-value: 1.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   501 VPLQQLMPTVQGGMPPTPQATQLTGQKQSQQQYDPSTGPP------VQNAASLHTPPPQLPARLPPASVPATALPSTLQF 574
Cdd:pfam09770 153 IPDLQVDASLWGVAPKKAAAPAPAPQPAAQPASLPAPSRKmmsleeVEAAMRAQAKKPAQQPAPAPAQPPAAPPAQQAQQ 232

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 74210751   575 SQQSQMVEASTQLQIPVKTQQLNAPIPAPLPSQL---PAPSSQPAQPALHVPMPGKAQMQTSQLSSQTQVL 642
Cdd:pfam09770 233 QQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILqrpQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQIL 303
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 513-646 1.46e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 1.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751  513 GMPPTPQATQLTGQKQSQQQYDPSTGPPVQNAASLHTPPPQLPARLPPASVPATALPSTLQFSQQSQMVEASTQLQIPVK 592
Cdd:PRK07764 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPS 463

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 74210751  593 TQQLNAPIPAPLPSQLPAPSSQPAQ-PALHVPMPgkAQMQTSQLSSQTQVLCGHW 646
Cdd:PRK07764 464 AQPAPAPAAAPEPTAAPAPAPPAAPaPAAAPAAP--AAPAAPAGADDAATLRERW 516
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 474-634 1.53e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 41.99  E-value: 1.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   474 PTEQSKRPRLEVGHPGVVFQH-PGVNAGVPLQQLMPTvqgGMPPTPQATQLTGQKQS--QQQYDPSTGPPVQNAASLHTP 550
Cdd:PRK10263  342 QTPPVASVDVPPAQPTVAWQPvPGPQTGEPVIAPAPE---GYPQQSQYAQPAVQYNEplQQPVQPQQPYYAPAAEQPAQQ 418

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   551 PPQLPARLPPASVPATALPSTLQFSQQSQMVEASTQLQIPVKTQQLNAPIPAPLPSQLPAPSSQPAQPALHV-PMPGKAQ 629
Cdd:PRK10263  419 PYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVePEPVVEE 498


                  ....*
gi 74210751   630 MQTSQ 634
Cdd:PRK10263  499 TKPAR 503
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 537-638 1.85e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 41.24  E-value: 1.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751  537 TGPPVQNAASLHTPPPQLPARLPPASVPATALPSTLQFSQQSQMVEASTQLQiPVKTQQLNA----PIPAPLPSQLPAPS 612
Cdd:PRK14951 371 EAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAP-PAPVAAPAAaapaAAPAAAPAAVALAP 449

                         90       100
                 ....*....|....*....|....*..
gi 74210751  613 SQPAQPALH-VPMPGKAQMQTSQLSSQ 638
Cdd:PRK14951 450 APPAQAAPEtVAIPVRVAPEPAVASAA 476
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 493-642 2.03e-03

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 41.29  E-value: 2.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   493 QHPGVNAGVPLQQLMPTVQGGMPPTPQATQLTGQKQSQqqydpstgPPVQNAASLHTPPPQLPARLPPASVPATALPSTL 572
Cdd:pfam03154 290 QHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQRIHT--------PPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTT 361

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751   573 QFsqqSQMVEASTQLQIPvktqQLNAPIPAPLPSQLPAPSSQPAQPALHVPMPGKAQMQTSQLSSQTQVL 642
Cdd:pfam03154 362 PI---PQLPNPQSHKHPP----HLSGPSPFQMNSNLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQQL 424
PRK10927 PRK10927
cell division protein FtsN;
462-566 2.59e-03

cell division protein FtsN;


Pssm-ID: 236797 [Multi-domain]  Cd Length: 319  Bit Score: 40.43  E-value: 2.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751  462 EADPFKRQQVMppTEQSKRPRLEVGHPgvvFQHPGVNAGVPLQQLMPTVQGgmPPTPQATQLTGQKQSQQQYDPSTGPPV 541
Cdd:PRK10927 143 EQTPEQRQQTL--QRQRQAQQLAEQQR---LAQQSRTTEQSWQQQTRTSQA--APVQAQPRQSKPASTQQPYQDLLQTPA 215

                         90       100
                 ....*....|....*....|....*
gi 74210751  542 QNAASLHTPPPQLPARLPPASVPAT 566
Cdd:PRK10927 216 HTTAQSKPQQAAPVTRAADAPKPTA 240
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 536-634 3.87e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.47  E-value: 3.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751  536 STGPPVQNAASLHTPPPQLPARLPPASVPATAlPSTLQFSQQSQMVEASTQLQIPVKTQqlnaPIPAPlPSQLPAPSSQP 615
Cdd:PRK14951 410 AASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA-PAAVALAPAPPAQAAPETVAIPVRVA----PEPAV-ASAAPAPAAAP 483

                         90
                 ....*....|....*....
gi 74210751  616 AQPALHVPMPGKAQMQTSQ 634
Cdd:PRK14951 484 AAARLTPTEEGDVWHATVQ 502
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
506-629 6.77e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.47  E-value: 6.77e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751  506 LMPTVQGG--MPPTPQATQLTGQKQSQQQYDPSTGPPVQNAASLHTPPPQLPARLPPASVPATALPS--TLQFSQQSQMV 581
Cdd:PRK12323 363 FRPGQSGGgaGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPApeALAAARQASAR 442

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 74210751  582 EASTQLQIPvktqqlNAPIPAPLPSQLPAPSSQPAQPALHVPMPGKAQ 629
Cdd:PRK12323 443 GPGGAPAPA------PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAA 484
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 507-629 7.73e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 39.46  E-value: 7.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74210751  507 MPTVQGGMPPTPQATQLTGQKQSQQQYDPSTGPPVQNAASLHTPPPQLPARLPPASVPATALPSTLQFSQQSQMVEASTQ 586
Cdd:PRK07994 363 APLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSE 442

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 74210751  587 LQIPVKTQQLNAPIpAPLPSQLPAPSSQPAQPALHVPMPGKAQ 629
Cdd:PRK07994 443 PAAASRARPVNSAL-ERLASVRPAPSALEKAPAKKEAYRWKAT 484
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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