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Conserved domains on  [gi|55771063|dbj|BAD72164|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Epigonichthys maldivensis]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009628)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-164 1.11e-26

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214461  Cd Length: 168  Bit Score: 98.91  E-value: 1.11e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55771063    1 MLQMMLTFCTIMTAMMIIRATSPYFGALATAGLALTASLLLLQMNVVFPAMILMLIYLGGMLVVFIYSTAYAADLLPLPI 80
Cdd:MTH00214   3 YFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPESW 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55771063   81 ---NMGSTVVAAFLGMLLITNMSPSVTetvcEGKIWESYSNTSGY---MLFDLYERGYGAFIVATIVLTVLLFSILELVS 154
Cdd:MTH00214  83 ggwSVLLFFLFYLLGLGFVGFYFYGGW----EMLSWMGVDEANNLdlsGVSDLYSRGFFLLLLGGVVLFLVLFVVLELVR 158

                        170
                 ....*....|
gi 55771063  155 HRQTTMKWFV 164
Cdd:MTH00214 159 GLSRGALRVV 168
 
Name Accession Description Interval E-value
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-164 1.11e-26

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 98.91  E-value: 1.11e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55771063    1 MLQMMLTFCTIMTAMMIIRATSPYFGALATAGLALTASLLLLQMNVVFPAMILMLIYLGGMLVVFIYSTAYAADLLPLPI 80
Cdd:MTH00214   3 YFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPESW 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55771063   81 ---NMGSTVVAAFLGMLLITNMSPSVTetvcEGKIWESYSNTSGY---MLFDLYERGYGAFIVATIVLTVLLFSILELVS 154
Cdd:MTH00214  83 ggwSVLLFFLFYLLGLGFVGFYFYGGW----EMLSWMGVDEANNLdlsGVSDLYSRGFFLLLLGGVVLFLVLFVVLELVR 158

                        170
                 ....*....|
gi 55771063  155 HRQTTMKWFV 164
Cdd:MTH00214 159 GLSRGALRVV 168
 
Name Accession Description Interval E-value
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-164 1.11e-26

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 98.91  E-value: 1.11e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55771063    1 MLQMMLTFCTIMTAMMIIRATSPYFGALATAGLALTASLLLLQMNVVFPAMILMLIYLGGMLVVFIYSTAYAADLLPLPI 80
Cdd:MTH00214   3 YFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPESW 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55771063   81 ---NMGSTVVAAFLGMLLITNMSPSVTetvcEGKIWESYSNTSGY---MLFDLYERGYGAFIVATIVLTVLLFSILELVS 154
Cdd:MTH00214  83 ggwSVLLFFLFYLLGLGFVGFYFYGGW----EMLSWMGVDEANNLdlsGVSDLYSRGFFLLLLGGVVLFLVLFVVLELVR 158

                        170
                 ....*....|
gi 55771063  155 HRQTTMKWFV 164
Cdd:MTH00214 159 GLSRGALRVV 168
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 4-154 2.20e-10

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 56.30  E-value: 2.20e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55771063    4 MMLTFCTIMTAMMIIRATSPYFGALATAGLALTASLLLLQMNVVFPAMILMLIYLGGMLVVFIYSTAYAADLLPLPINMG 83
Cdd:MTH00115   6 FLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPEAWGDW 85

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 55771063   84 STVVAAFLGMLLITNMSPSVTETVCEGKIWESYSNTSGYMLFD--------LYERGYGAFIVATIVLTVLLFSILELVS 154
Cdd:MTH00115  86 GVVGYVVGFVLVVVVVGVVVGGLWGMEGVGVVTVDSGGLFVVRldfsgvslFYSSGGGGLLVCGWGLLLTLFVVLELVR 164
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 22-152 3.83e-09

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 52.60  E-value: 3.83e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55771063   22 SPYFGALATAGLALTASLLLLQMNVVFPAMILMLIYLGGMLVVFIYSTAYAADLLPLPINMGSTVVAAFLGMLLITNMSP 101
Cdd:MTH00045  22 SPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPSVSNLGEVLVLSLLLSLWVFISFD 101

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 55771063  102 SVTETVCEGkiWESYSNTSGYMLFDLYERGYGAFIVATIVLTVLLFSILEL 152
Cdd:MTH00045 102 NFLELSNNN--WSLVSLSDLVGSSELYNSGGLYLLLGGFILLVALVVALVI 150
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 22-153 9.16e-09

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 51.77  E-value: 9.16e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55771063   22 SPYFGALATAGLALTASLLLLQMNVVFPAMILMLIYLGGMLVVFIYSTAYAADllPLPINMGSTVVAAFLGMLLI----- 96
Cdd:MTH00065  24 SPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAE--PYPEAWGSWSVLVYVLFYLLllivg 101

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 55771063   97 -----TNMSPSVTETVCEGKIWESYSNTSGYMLfdLYERGYGAFIVATIVLTVLLFSILELV 153
Cdd:MTH00065 102 yilfgCNFSLEFLFTNYDTEFSVVGYDWGGVGL--MYSSGGWFLMISGWVLLLTLFVVLEVT 161
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 22-153 5.62e-08

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 49.75  E-value: 5.62e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 55771063   22 SPYFGALATAGLALTASLLLLQMNVVFPAMILMLIYLGGMLVVFIYSTAYAADllPLPINMGSTVVAAFLGMLLitnmsp 101
Cdd:MTH00138  24 SPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAE--PYPESWGSWSVLGYVVGYL------ 95

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 55771063  102 sVTETVCEGKIWESYSNTSGYMLFDL----------------YERGYGAFIVATIVLTVLLFSILELV 153
Cdd:MTH00138  96 -VGVVLAAGLFWGGWYEGSWVVVDELkefsvlrgdvggvalmYSSGGGMLVICAWVLLLTLFVVLELT 162
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 47-97 2.79e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 36.70  E-value: 2.79e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 55771063   47 VFPAMILMLIYLGGMLVVFIYSTAYAADllPLPINMGSTVVAafLGMLLIT 97
Cdd:MTH00109  50 SFLGLMVFLIYLGGMLVVFGYTTAMATE--EYPETWVSNKVV--LGALLLG 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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