|
Name |
Accession |
Description |
Interval |
E-value |
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
154-954 |
0e+00 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 1017.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 154 LQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQ 233
Cdd:pfam10174 1 LQAQLRDLQRENELLRRELDIKESKLGSSMNSIKTFWSPELKKERALRKEEAARISVLKEQYRVTQEENQHLQLTIQALQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 234 DELRIQRDLNQLFQQD--SSSRTGEPCVA--ELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESI 309
Cdd:pfam10174 81 DELRAQRDLNQLLQQDftTSPVDGEDKFStpELTEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQTLGARDESI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 310 KKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENSMLREEMHRRFENAPDSAKTKALQTVIEMKDS 389
Cdd:pfam10174 161 KKLLEMLQSKGLPKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPDPAKTKALQTVIEMKDT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 390 KISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFS 469
Cdd:pfam10174 241 KISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 470 DSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQ 549
Cdd:pfam10174 321 DCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQ 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 550 KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDL 629
Cdd:pfam10174 401 KKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLKKENKDL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 630 KEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMSDRI 709
Cdd:pfam10174 481 KEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRI 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 710 QHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELE----RQVKDQNKKVANLKHKEQVEKKKSAQMLEE 785
Cdd:pfam10174 561 RLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELEsltlRQMKEQNKKVANIKHGQQEMKKKGAQLLEE 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 786 ARRREDNLNDSSQQlqdslrkkddrieeleealresvqitaeremvlaqeesartnaeKQVEELLMAMEKVKQELESMKA 865
Cdd:pfam10174 641 ARRREDNLADNSQQ--------------------------------------------LQLEELMGALEKTRQELDATKA 676
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 866 KLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSS-KKKTQEEVAALKREKDRLVQQL 944
Cdd:pfam10174 677 RLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLAAISEKDANIALLELSSSkKKKTQEEVMALKREKDRLVHQL 756
|
810
....*....|
gi 27530920 945 KQQTQNRMKL 954
Cdd:pfam10174 757 KQQTQNRMKL 766
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
398-940 |
2.40e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 94.23 E-value: 2.40e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 398 LRDLEEEIQMLKSNGALSTEEREEEMKQMEVyrshskfMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEV 477
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAE-------LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 478 LKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQE 557
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 558 QLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRD---RDEREKQEEIDNYKKDLKDLKEKVS 634
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEeeeEALEEAAEEEAELEEEEEALLELLA 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 635 LLQGDLSEKEASLLDLKEHASSLASSGLKK-----------DSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASP 703
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLleaeadyegflEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAA 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 704 EMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDqnkkVANLKHKEQVEKKKSAQML 783
Cdd:COG1196 547 ALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDL----VASDLREADARYYVLGDTL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 784 EEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESM 863
Cdd:COG1196 623 LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAE 702
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 27530920 864 KAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRL 940
Cdd:COG1196 703 EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
203-947 |
3.93e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 93.58 E-value: 3.93e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 203 DEASKITIWKEQYRVVQEENQHMQMTIQALQDELR-IQRDLNQLFQQdsssrtgepcvAELTEEnFQRLHAEHERQAKEL 281
Cdd:TIGR02168 162 EEAAGISKYKERRKETERKLERTRENLDRLEDILNeLERQLKSLERQ-----------AEKAER-YKELKAELRELELAL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 282 FLLRktleemelrIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTR-RLAEAEMHVHHLES-LLEQKEKENSM 359
Cdd:TIGR02168 230 LVLR---------LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRlEVSELEEEIEELQKeLYALANEISRL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 360 LREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNK 439
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 440 IGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLtaKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQD 519
Cdd:TIGR02168 381 LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI--EELLKKLEEAELKELQAELEELEEELEELQEELER 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 520 MAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVK------------------------- 574
Cdd:TIGR02168 459 LEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKnqsglsgilgvlselisvdegyeaa 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 575 -------SLQADTTNTDTALTTLEEALAEKE-------------------RTIERLKEQR-------DRDEREKQ----- 616
Cdd:TIGR02168 539 ieaalggRLQAVVVENLNAAKKAIAFLKQNElgrvtflpldsikgteiqgNDREILKNIEgflgvakDLVKFDPKlrkal 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 617 ----------EEIDNYKKDLKDLKEKVSL--LQGDL-----------SEKEASLLDLKEHASSLASSGLKKDSRLKTLEI 673
Cdd:TIGR02168 619 syllggvlvvDDLDNALELAKKLRPGYRIvtLDGDLvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEK 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 674 ALEQKKEECLKMESQLKKAHEAALEA-RASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIA 752
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELsRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 753 ELERQVKDQNKKVANLkhkeQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVL 832
Cdd:TIGR02168 779 EAEAEIEELEAQIEQL----KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 833 AQeesartnAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDA 912
Cdd:TIGR02168 855 ES-------LAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
810 820 830 840
....*....|....*....|....*....|....*....|....*.
gi 27530920 913 NIALLE-----------LSSSKKKTQEEVAALKREKDRLVQQLKQQ 947
Cdd:TIGR02168 928 ELRLEGlevridnlqerLSEEYSLTLEEAEALENKIEDDEEEARRR 973
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
399-940 |
4.82e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 93.08 E-value: 4.82e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 399 RDLEEEIQMLKSNGALSteEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVL 478
Cdd:COG1196 216 RELKEELKELEAELLLL--KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 479 KESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQ 558
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 559 LRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQG 638
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 639 DLSEKEASLLDLKEHASSLAsSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMSDRIQHLEREITr 718
Cdd:COG1196 454 LEEEEEALLELLAELLEEAA-LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIG- 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 719 ykDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELErqvKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDssq 798
Cdd:COG1196 532 --VEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYL---KAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDL--- 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 799 qLQDSLRKKDDRIEELEEALRESVQITAEREMvlAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKE 878
Cdd:COG1196 604 -VASDLREADARYYVLGDTLLGRTLVAARLEA--ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE 680
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 27530920 879 THLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRL 940
Cdd:COG1196 681 LEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL 742
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
442-950 |
1.11e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.37 E-value: 1.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 442 QVKQELSRKDTELLALqtkletltnqfsdskqHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMA 521
Cdd:COG1196 217 ELKEELKELEAELLLL----------------KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 522 EEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTI 601
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 602 ERLKEQRDRDER---EKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQK 678
Cdd:COG1196 361 AEAEEALLEAEAelaEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 679 KEECLKMESQLKKAHEAALEARAspemsdRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAE-LERQ 757
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLE------LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvKAAL 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 758 VKDQNKKVANLKHKEQVEKKKSAQMLEEA------RRREDNLNDSSQQLQDSLRKKD--------DRIEELEEALRESVQ 823
Cdd:COG1196 515 LLAGLRGLAGAVAVLIGVEAAYEAALEAAlaaalqNIVVEDDEVAAAAIEYLKAAKAgratflplDKIRARAALAAALAR 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 824 ITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSST-QQSLAEKETHLTNLRAERRKHLEEVLEMKQEA 902
Cdd:COG1196 595 GAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTlAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL 674
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 27530920 903 LLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQN 950
Cdd:COG1196 675 LEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELE 722
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
230-867 |
4.01e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.83 E-value: 4.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 230 QALQDELRiQRDLNQLFQQDsssrtgepcvaELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESI 309
Cdd:COG1196 216 RELKEELK-ELEAELLLLKL-----------RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 310 KKLLEMLQSKGLSAKATEEDHERTRRLAEAemhvhhLESLLEQKEKENSMLREEMHRrfenapDSAKTKALQTVIEMKDS 389
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRE------LEERLEELEEELAELEEELEE------LEEELEELEEELEEAEE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 390 KISSMERGLRDLEEEIQMLKSngALSTEEREEEmkqmevyrshskfmknkigQVKQELSRKDTELLALQTKLETLTNQFS 469
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEA--ELAEAEEELE-------------------ELAEELLEALRAAAELAAQLEELEEAEE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 470 DSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQ 549
Cdd:COG1196 411 ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 550 KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEK---ERTIERLKEQRDRDEREKQEEIDnykkdl 626
Cdd:COG1196 491 ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAaleAALAAALQNIVVEDDEVAAAAIE------ 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 627 kdlkekvsLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMS 706
Cdd:COG1196 565 --------YLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAAL 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 707 DRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEA 786
Cdd:COG1196 637 RRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 787 RRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEEL----LMAME---KVKQE 859
Cdd:COG1196 717 LEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALgpvnLLAIEeyeELEER 796
|
....*...
gi 27530920 860 LESMKAKL 867
Cdd:COG1196 797 YDFLSEQR 804
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
272-941 |
5.19e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 83.58 E-value: 5.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 272 AEHERQAKELFLLRKTLEEMELRIETQKQTLN------ARDESIKKLLEMLQSKGLSAKATE-EDHERTRRLAEAEmhVH 344
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLErlrrerEKAERYQALLKEKREYEGYELLKEkEALERQKEAIERQ--LA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 345 HLESLLEQKEKENSMLREEMHRRFENAPDSAKTkalqtVIEMKDSKISSMERGLRDLEEEIQMLKSngalSTEEREEEMK 424
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKK-----IKDLGEEEQLRVKEKIGELEAEIASLER----SIAEKERELE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 425 QMEvyrSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLE 504
Cdd:TIGR02169 319 DAE---ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 505 EKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTD 584
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 585 TALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQ--GDLSEKEASLLD------------- 649
Cdd:TIGR02169 476 EEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAqlGSVGERYATAIEvaagnrlnnvvve 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 650 -----------LKEH--------------ASSLASSGLKKDS-------------------------------------- 666
Cdd:TIGR02169 556 ddavakeaielLKRRkagratflplnkmrDERRDLSILSEDGvigfavdlvefdpkyepafkyvfgdtlvvedieaarrl 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 667 ----RLKTLEIALEQKKEECLKMESQLKKAHEAALEARAS-PEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVE 741
Cdd:TIGR02169 636 mgkyRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAElQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAS 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 742 NEKNDKDK--------------KIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSS--------QQ 799
Cdd:TIGR02169 716 RKIGEIEKeieqleqeeeklkeRLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEarlshsriPE 795
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 800 LQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEK-- 877
Cdd:TIGR02169 796 IQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELea 875
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 27530920 878 -----ETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLV 941
Cdd:TIGR02169 876 alrdlESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
351-953 |
1.28e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 82.50 E-value: 1.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 351 EQKEKENSMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEeiqmlksngaLSTEEREEEMKQMEVYR 430
Cdd:PTZ00121 1113 EARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARK----------AEEARKAEDAKKAEAAR 1182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 431 SHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLK-ESLTAKEQRAAILQTEVDALRLRLEEKETM 509
Cdd:PTZ00121 1183 KAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKaEEAKKDAEEAKKAEEERNNEEIRKFEEARM 1262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 510 LNKKTKQIQDMAEEKgTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQmsslKERVKSLQADTTNTDTALTT 589
Cdd:PTZ00121 1263 AHFARRQAAIKAEEA-RKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA----DEAKKKAEEAKKKADAAKKK 1337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 590 LEEAlaEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKvsllQGDLSEKEASLLDLKEHASSLASSGLKKDSRLK 669
Cdd:PTZ00121 1338 AEEA--KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK----KADAAKKKAEEKKKADEAKKKAEEDKKKADELK 1411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 670 TLEIA------LEQKKEECLKMESQLKKAHEA--ALEARASPEMSDRIQHLEREIT-RYKDESSKAQAEVDRLLEILKEv 740
Cdd:PTZ00121 1412 KAAAAkkkadeAKKKAEEKKKADEAKKKAEEAkkADEAKKKAEEAKKAEEAKKKAEeAKKADEAKKKAEEAKKADEAKK- 1490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 741 eneKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRK-----KDDRIEELE 815
Cdd:PTZ00121 1491 ---KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKaeelkKAEEKKKAE 1567
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 816 EALRESvqitAEREMVLAQEESARTNAEKQVEELLM---------AMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRA 886
Cdd:PTZ00121 1568 EAKKAE----EDKNMALRKAEEAKKAEEARIEEVMKlyeeekkmkAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 27530920 887 ERRKHLEEVLEMKQEALLAAISEKDAniallelSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMK 953
Cdd:PTZ00121 1644 EEKKKAEELKKAEEENKIKAAEEAKK-------AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
683-951 |
2.01e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.52 E-value: 2.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 683 LKMESQLKKAHEAALEARaspEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQN 762
Cdd:COG1196 218 LKEELKELEAELLLLKLR---ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 763 KKVANLKHKEQVEKKKSAQM---LEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESAR 839
Cdd:COG1196 295 AELARLEQDIARLEERRRELeerLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 840 TNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLEL 919
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270
....*....|....*....|....*....|..
gi 27530920 920 SSSKKKTQEEVAALKREKDRLVQQLKQQTQNR 951
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
272-938 |
5.51e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 80.57 E-value: 5.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 272 AEHERQAKELFLLRKTleEMELRIETQKQTLNARD-ESIKKLLEMLQSKGLSaKATEEDHERTRRLAEAEMHVHHLESLL 350
Cdd:PTZ00121 1145 ARKAEDAKRVEIARKA--EDARKAEEARKAEDAKKaEAARKAEEVRKAEELR-KAEDARKAEAARKAEEERKAEEARKAE 1221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 351 EQKEKENSMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEiQMLKSNGALSTEE--REEEMKQMEV 428
Cdd:PTZ00121 1222 DAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAE-EARKADELKKAEEkkKADEAKKAEE 1300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 429 YRSHSKFMKNKIGQVKQELSRKDTEllALQTKLETLTNQFSDSKQHIEVLK--ESLTAKEQRAAILQTEVDALRLRLEEK 506
Cdd:PTZ00121 1301 KKKADEAKKKAEEAKKADEAKKKAE--EAKKKADAAKKKAEEAKKAAEAAKaeAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 507 ETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKvnvlQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTA 586
Cdd:PTZ00121 1379 KADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA----KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 587 LTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDS 666
Cdd:PTZ00121 1455 EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 667 RLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMSDRIQHLER-EITRYKDESSKAQAEVDRLLEILKEVENEKN 745
Cdd:PTZ00121 1535 KADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKaEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK 1614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 746 DKDKKI-AELERQVKDQNKKVANLKHKEQVEKKKSaqmlEEARRREDNLNDSSQQLQdslRKKDDRIEELEEALRESVQI 824
Cdd:PTZ00121 1615 AEEAKIkAEELKKAEEEKKKVEQLKKKEAEEKKKA----EELKKAEEENKIKAAEEA---KKAEEDKKKAEEAKKAEEDE 1687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 825 TAEREMVLAQEESARTNAE--KQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHlEEVLEMKQEA 902
Cdd:PTZ00121 1688 KKAAEALKKEAEEAKKAEElkKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK-KKIAHLKKEE 1766
|
650 660 670
....*....|....*....|....*....|....*.
gi 27530920 903 LLAAISEKDANIALLELSSSKKKTQEEVAALKREKD 938
Cdd:PTZ00121 1767 EKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKD 1802
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
375-954 |
5.82e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.10 E-value: 5.82e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 375 AKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSngALSTEEREEEMKQMEVYRShskfmKNKIGQVKQELSRKDTEL 454
Cdd:TIGR02168 239 EELEELQEELKEAEEELEELTAELQELEEKLEELRL--EVSELEEEIEELQKELYAL-----ANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 455 LALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDL 534
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 535 kdmldvkERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSL---------QADTTNTDTALTTLEEALAEKERTIERLK 605
Cdd:TIGR02168 392 -------ELQIASLNNEIERLEARLERLEDRRERLQQEIEELlkkleeaelKELQAELEELEEELEELQEELERLEEALE 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 606 EQRDRdEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKE---ASLLDLKEHASSLA------SSGLKKDSRLKT-LEIAL 675
Cdd:TIGR02168 465 ELREE-LEEAEQALDAAERELAQLQARLDSLERLQENLEgfsEGVKALLKNQSGLSgilgvlSELISVDEGYEAaIEAAL 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 676 ---------EQKKEECLKMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDE-----------SSKAQAEVDRLLE 735
Cdd:TIGR02168 544 ggrlqavvvENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGflgvakdlvkfDPKLRKALSYLLG 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 736 ILKEVEN--EKNDKDKKIAELERQVKDQNKKV---------ANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSL 804
Cdd:TIGR02168 624 GVLVVDDldNALELAKKLRPGYRIVTLDGDLVrpggvitggSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAEL 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 805 RKKDDRIEELEEALR----ESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETH 880
Cdd:TIGR02168 704 RKELEELEEELEQLRkeleELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 27530920 881 LTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKL 954
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESL 857
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
437-814 |
9.28e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.33 E-value: 9.28e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 437 KNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 516
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 517 IQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAE 596
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 597 KERTIERLKEQRDRderekqeeidnykkdlkdlkekvslLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALE 676
Cdd:TIGR02168 836 TERRLEDLEEQIEE-------------------------LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 677 QKKEECLKMESQLKKAHEAALEARaspemsDRIQHLEREITRYKDESSKAQAEVDRLLEILKE--------VENEKNDKD 748
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELR------RELEELREKLAQLELRLEGLEVRIDNLQERLSEeysltleeAEALENKIE 964
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 27530920 749 KKIAELERQVKDQNKKVA-----NLKHKEQVEKKKsaQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEEL 814
Cdd:TIGR02168 965 DDEEEARRRLKRLENKIKelgpvNLAAIEEYEELK--ERYDFLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
391-899 |
6.34e-14 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 76.64 E-value: 6.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 391 ISSMERGLRDLEEEIQMLKsngaLSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLtnqfSD 470
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIK----RRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKL----EK 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 471 SKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAE---------EKGTQAGEIHDLKDMLDVK 541
Cdd:PRK03918 229 EVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEkvkelkelkEKAEEYIKLSEFYEEYLDE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 542 ERKVNV----LQKKIENLQEQLRD---KEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERtIERLKEQRDRDERE 614
Cdd:PRK03918 309 LREIEKrlsrLEEEINGIEERIKEleeKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE-LERLKKRLTGLTPE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 615 K-QEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLK----------------------EHASSLASSGLKKDSRLKTL 671
Cdd:PRK03918 388 KlEKELEELEKAKEEIEEEISKITARIGELKKEIKELKkaieelkkakgkcpvcgrelteEHRKELLEEYTAELKRIEKE 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 672 EIALEQKKEECLKMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAE------------------VDRL 733
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEeyeklkekliklkgeiksLKKE 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 734 LEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEE 813
Cdd:PRK03918 548 LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEE 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 814 LEEALRESVQITAEREMVLAQ-EESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHL 892
Cdd:PRK03918 628 LDKAFEELAETEKRLEELRKElEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE 707
|
....*..
gi 27530920 893 EEVLEMK 899
Cdd:PRK03918 708 KAKKELE 714
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
373-938 |
2.04e-13 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 74.67 E-value: 2.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 373 DSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDT 452
Cdd:TIGR04523 66 DEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLT 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 453 ELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGtqagEIH 532
Cdd:TIGR04523 146 EIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLES----QIS 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 533 DLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDE 612
Cdd:TIGR04523 222 ELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLN 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 613 REKQEEIDNYKKDL-KDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEEC--LKMESQL 689
Cdd:TIGR04523 302 NQKEQDWNKELKSElKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIekLKKENQS 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 690 KKAHEAALEARASpEMSDRIQH-------LEREITRYKDESSKAQAEVDRLLEI-------LKEVENEKNDKDKKIAELE 755
Cdd:TIGR04523 382 YKQEIKNLESQIN-DLESKIQNqeklnqqKDEQIKKLQQEKELLEKEIERLKETiiknnseIKDLTNQDSVKELIIKNLD 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 756 RQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRRE---DNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVL 832
Cdd:TIGR04523 461 NTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEkelKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI 540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 833 AQEES---------ARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEAL 903
Cdd:TIGR04523 541 SDLEDelnkddfelKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELE 620
|
570 580 590
....*....|....*....|....*....|....*
gi 27530920 904 LAAISEKDANIALLELSSSKKKTQEEVAALKREKD 938
Cdd:TIGR04523 621 KAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIK 655
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
436-821 |
9.69e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.79 E-value: 9.69e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 436 MKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTK 515
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 516 QIQDMAEEKGTQAGEIHDLKDMLDvkerkvnvlQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALA 595
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNDLEARLS---------HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 596 EKERTIERLKEQRDrdEREKQEEIDNYKKDLkdlkekvslLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIAL 675
Cdd:TIGR02169 837 ELQEQRIDLKEQIK--SIEKEIENLNGKKEE---------LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI 905
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 676 EQkkeecLKMESQLKKAHEAALEARASpEMSDRIQHLEREITRYKDESS------KAQAEVDRLLEILKEVENEKNdkdK 749
Cdd:TIGR02169 906 EE-----LEAQIEKKRKRLSELKAKLE-ALEEELSEIEDPKGEDEEIPEeelsleDVQAELQRVEEEIRALEPVNM---L 976
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 27530920 750 KIAELERQVKDQNkkvaNLKHKEQVEKKKSAQMLEearrrednlndssqqlqdslrkkddRIEELEEALRES 821
Cdd:TIGR02169 977 AIQEYEEVLKRLD----ELKEKRAKLEEERKAILE-------------------------RIEEYEKKKREV 1019
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
350-897 |
1.55e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 71.99 E-value: 1.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 350 LEQKEKEnsmLREEMHRRFENAPDSAKTK-ALQTVIEMKDSKISSMErglrDLEEEIQMLKSNGALSTEEREEEMKQMEV 428
Cdd:PRK02224 211 LESELAE---LDEEIERYEEQREQARETRdEADEVLEEHEERREELE----TLEAEIEDLRETIAETEREREELAEEVRD 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 429 YRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKET 508
Cdd:PRK02224 284 LRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELRE 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 509 MLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALT 588
Cdd:PRK02224 364 EAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 589 TLEEALA-----------EKERTIERLKEQRDRDErEKQEEIDNYKKDLKDLKEKVSLLQgDLSEKEASLLDLKEHASSL 657
Cdd:PRK02224 444 EAEALLEagkcpecgqpvEGSPHVETIEEDRERVE-ELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEERREDL 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 658 ASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEAR-ASPEMSDRIQHLEREitrykdesskaQAEVDRLLEI 736
Cdd:PRK02224 522 EELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEeEAEEAREEVAELNSK-----------LAELKERIES 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 737 LKEVEneknDKDKKIAELERQVKDQNKKVANLkhkeqvekkksAQMLEEARRREDNLNDSSQQLQDSLrkKDDRIEELEE 816
Cdd:PRK02224 591 LERIR----TLLAAIADAEDEIERLREKREAL-----------AELNDERRERLAEKRERKRELEAEF--DEARIEEARE 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 817 ALRESVQITAEREMVLAQEESARTNAEKQ---VEELLMAMEKVKQELESMKAK---LSSTQQSLAEKETHLTNLRAERRK 890
Cdd:PRK02224 654 DKERAEEYLEQVEEKLDELREERDDLQAEigaVENELEELEELRERREALENRveaLEALYDEAEELESMYGDLRAELRQ 733
|
....*..
gi 27530920 891 HLEEVLE 897
Cdd:PRK02224 734 RNVETLE 740
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
212-769 |
4.64e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 70.53 E-value: 4.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 212 KEQYRVVQEENQH-MQMTIQALQDELRI-----QRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHERQAKELFLLR 285
Cdd:pfam15921 244 EDQLEALKSESQNkIELLLQQHQDRIEQlisehEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 286 KTLEEMELRIETQKQTLNARDESIKKLLEMLQSKgLSAKATEEDhERTRRLAEAEMHVHHLESLLEQKEKENSMLREEMH 365
Cdd:pfam15921 324 STVSQLRSELREAKRMYEDKIEELEKQLVLANSE-LTEARTERD-QFSQESGNLDDQLQKLLADLHKREKELSLEKEQNK 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 366 RRFE-NAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVK 444
Cdd:pfam15921 402 RLWDrDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVV 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 445 QELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAI-----------------LQTEVDALRLRLEEKE 507
Cdd:pfam15921 482 EELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLklqelqhlknegdhlrnVQTECEALKLQMAEKD 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 508 TMLNKKTKQIQDMAE---EKGTQAGEIHDLKDMLdvkERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTD 584
Cdd:pfam15921 562 KVIEILRQQIENMTQlvgQHGRTAGAMQVEKAQL---EKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLV 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 585 talttleEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKK 664
Cdd:pfam15921 639 -------NAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQT 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 665 DSRLKTLEIALEQKKEECLKMESQLKkAHEAALEAraspeMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEK 744
Cdd:pfam15921 712 RNTLKSMEGSDGHAMKVAMGMQKQIT-AKRGQIDA-----LQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEK 785
|
570 580
....*....|....*....|....*
gi 27530920 745 NDKDKKIAELERQVKDQNKKVANLK 769
Cdd:pfam15921 786 NKMAGELEVLRSQERRLKEKVANME 810
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
230-946 |
4.86e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.48 E-value: 4.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 230 QALQDELRIQRD---LNQLFQQDSSSRTGEPCVAELTEEnFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARd 306
Cdd:TIGR02169 214 QALLKEKREYEGyelLKEKEALERQKEAIERQLASLEEE-LEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLR- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 307 esIKKLLEMLQSKGLSAKATEEDHERtrRLAEAEMHVHHLESLLEQKEKENSMLREEMHR-RFENAPDSAKTKALQTVIE 385
Cdd:TIGR02169 292 --VKEKIGELEAEIASLERSIAEKER--ELEDAEERLAKLEAEIDKLLAEIEELEREIEEeRKRRDKLTEEYAELKEELE 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 386 MKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLT 465
Cdd:TIGR02169 368 DLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 466 NQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQA-----------GEIHDL 534
Cdd:TIGR02169 448 LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRaveevlkasiqGVHGTV 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 535 KDMLDVKERKV-------------------NVLQKKIENLQE------------QLRDKEKQMSSLKE------------ 571
Cdd:TIGR02169 528 AQLGSVGERYAtaievaagnrlnnvvveddAVAKEAIELLKRrkagratflplnKMRDERRDLSILSEdgvigfavdlve 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 572 -----------------------------------------------------RVKSLQADTTNTDTALTTLEEALAEKE 598
Cdd:TIGR02169 608 fdpkyepafkyvfgdtlvvedieaarrlmgkyrmvtlegelfeksgamtggsrAPRGGILFSRSEPAELQRLRERLEGLK 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 599 RTIERLKEQRDRDER---EKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIAL 675
Cdd:TIGR02169 688 RELSSLQSELRRIENrldELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARI 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 676 EQKKEECLKMESQLkkaheAALEARASPEmsdRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELE 755
Cdd:TIGR02169 768 EELEEDLHKLEEAL-----NDLEARLSHS---RIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 756 RQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMvlaqe 835
Cdd:TIGR02169 840 EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK----- 914
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 836 esartnAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEkETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIA 915
Cdd:TIGR02169 915 ------KRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE-ELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKR 987
|
810 820 830
....*....|....*....|....*....|.
gi 27530920 916 LLELSSSKKKTQEEVAALKREKDRLVQQLKQ 946
Cdd:TIGR02169 988 LDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
323-944 |
1.02e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.33 E-value: 1.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 323 AKATEEDHERTRRLAEAEMHVHHLESLLE--QKEKENSM----LREEMhRRFENAPDSAKTKALQTVIEMKDSKISSMER 396
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLErlRREREKAEryqaLLKEK-REYEGYELLKEKEALERQKEAIERQLASLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 397 GLRDLEEEIQML-KSNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHI 475
Cdd:TIGR02169 252 ELEKLTEEISELeKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 476 EVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENL 555
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 556 QEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDERE---KQEEIDNYKKDlkdlkek 632
Cdd:TIGR02169 412 QEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQElydLKEEYDRVEKE------- 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 633 VSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQkkeeCLKMESQLKKAHEAALEARASPEMSDR---- 708
Cdd:TIGR02169 485 LSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQ----LGSVGERYATAIEVAAGNRLNNVVVEDdava 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 709 ---IQHLERE---------ITRYKDESS-----KAQAEVDRLLEILkeveneknDKDKKIAELERQVKDQNKKVANLKHK 771
Cdd:TIGR02169 561 keaIELLKRRkagratflpLNKMRDERRdlsilSEDGVIGFAVDLV--------EFDPKYEPAFKYVFGDTLVVEDIEAA 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 772 EQVEKK------------KSAQMLEEARRREDNLNDSSQQLqDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESAR 839
Cdd:TIGR02169 633 RRLMGKyrmvtlegelfeKSGAMTGGSRAPRGGILFSRSEP-AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQEL 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 840 TNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAErRKHLEEVLEMKQEAlLAAISEKDANIALLEL 919
Cdd:TIGR02169 712 SDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE-LKELEARIEELEED-LHKLEEALNDLEARLS 789
|
650 660
....*....|....*....|....*
gi 27530920 920 SSSKKKTQEEVAALKREKDRLVQQL 944
Cdd:TIGR02169 790 HSRIPEIQAELSKLEEEVSRIEARL 814
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
460-1000 |
1.26e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 68.91 E-value: 1.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 460 KLETLTNQFSDSKQHIE-VLKESLTAKEQ-RAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDM 537
Cdd:PRK02224 163 KLEEYRERASDARLGVErVLSDQRGSLDQlKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 538 LDVKERK---VNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALttlEEALAEKERT---IERLKEQRDRD 611
Cdd:PRK02224 243 LEEHEERreeLETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEER---DDLLAEAGLDdadAEAVEARREEL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 612 EREKQEeidnykkdlkdlkekvslLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLeialeqkKEECLKMESQLKK 691
Cdd:PRK02224 320 EDRDEE------------------LRDRLEECRVAAQAHNEEAESLREDADDLEERAEEL-------REEAAELESELEE 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 692 AHEAALEARaspemsDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVAnlkhk 771
Cdd:PRK02224 375 AREAVEDRR------EEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVE----- 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 772 eqvekkKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARtNAEKQVEELLM 851
Cdd:PRK02224 444 ------EAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLV-EAEDRIERLEE 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 852 AMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKK------ 925
Cdd:PRK02224 517 RREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESlerirt 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 926 TQEEVAALKREKDRLVQQLKQQ----TQNRMKL---------MADNYEDDHFKSSHSNQTNHKPSPDQIIQPLLELDQNR 992
Cdd:PRK02224 597 LLAAIADAEDEIERLREKREALaelnDERRERLaekrerkreLEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREER 676
|
....*...
gi 27530920 993 SKLKLYIG 1000
Cdd:PRK02224 677 DDLQAEIG 684
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
156-863 |
2.28e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 2.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 156 TQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSpELKKERALRKDEASKIT-IWKEQYRVVQEENQHMQMTIQALQD 234
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQkELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 235 ELRIQRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIET----------------- 297
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEleeqletlrskvaqlel 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 298 QKQTLNARDESIKKLLEMLQSKglSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENSMLREEMHRRFENAPDSAKT 377
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDR--RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 378 KALQTVIEMKD------SKISSMERGLRDLEEEIQMLKSNGA---------------LSTEEREE--------------E 422
Cdd:TIGR02168 472 EAEQALDAAERelaqlqARLDSLERLQENLEGFSEGVKALLKnqsglsgilgvlselISVDEGYEaaieaalggrlqavV 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 423 MKQMEVYRSHSKFMK-NKIGQV---------KQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAkeqRAAIL 492
Cdd:TIGR02168 552 VENLNAAKKAIAFLKqNELGRVtflpldsikGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLG---GVLVV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 493 QTEVDALRLRLEEKETMLN--------------------------KKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVN 546
Cdd:TIGR02168 629 DDLDNALELAKKLRPGYRIvtldgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEKIAELEKALAELRKELE 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 547 VLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNykkdL 626
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE----I 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 627 KDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPE-M 705
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEeL 864
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 706 SDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQML-- 783
Cdd:TIGR02168 865 EELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQer 944
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 784 --EEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRE--SVQITAEREmvLAQEESARTNAEKQVEELLMAMEKVKQE 859
Cdd:TIGR02168 945 lsEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKElgPVNLAAIEE--YEELKERYDFLTAQKEDLTEAKETLEEA 1022
|
....
gi 27530920 860 LESM 863
Cdd:TIGR02168 1023 IEEI 1026
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
387-953 |
1.09e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 66.32 E-value: 1.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 387 KDSKISSMERGLRD--LEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETL 464
Cdd:PTZ00121 1077 KDFDFDAKEDNRADeaTEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEI 1156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 465 TNQFSDSKQHIEVLK--ESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAE-EKGTQAGEIHDLKDMLDVK 541
Cdd:PTZ00121 1157 ARKAEDARKAEEARKaeDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEaRKAEDAKKAEAVKKAEEAK 1236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 542 ERKVNVLQ-KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEAlaEKERTIERLKEQRDRDEREKQEEID 620
Cdd:PTZ00121 1237 KDAEEAKKaEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK--KKADEAKKAEEKKKADEAKKKAEEA 1314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 621 NYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEAR 700
Cdd:PTZ00121 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 701 ASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHK-EQVEKKKS 779
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKaEEAKKADE 1474
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 780 AQMLEEARRREDNLNDSSQQLQ---DSLRKKDDRIEELEEALRESVQITAERemVLAQEESARTNAEKQVEELLMAME-K 855
Cdd:PTZ00121 1475 AKKKAEEAKKADEAKKKAEEAKkkaDEAKKAAEAKKKADEAKKAEEAKKADE--AKKAEEAKKADEAKKAEEKKKADElK 1552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 856 VKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEvlEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKR 935
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE--ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE 1630
|
570
....*....|....*...
gi 27530920 936 EKDRLVQQLKQQTQNRMK 953
Cdd:PTZ00121 1631 EKKKVEQLKKKEAEEKKK 1648
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
376-867 |
1.32e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.43 E-value: 1.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 376 KTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELS------- 448
Cdd:TIGR04523 226 QNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISdlnnqke 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 449 -----RKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEE 523
Cdd:TIGR04523 306 qdwnkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQE 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 524 KGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIER 603
Cdd:TIGR04523 386 IKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRES 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 604 LKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEK---EASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKE 680
Cdd:TIGR04523 466 LETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKkelEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLED 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 681 ECLKMESQLKKAheaalearaspEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKND-------KDKKIAE 753
Cdd:TIGR04523 546 ELNKDDFELKKE-----------NLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDlikeieeKEKKISS 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 754 LERQVKDQNKK-------VANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITA 826
Cdd:TIGR04523 615 LEKELEKAKKEneklssiIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELSLHYK 694
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 27530920 827 ER--EMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKL 867
Cdd:TIGR04523 695 KYitRMIRIKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNF 737
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
160-900 |
3.49e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.78 E-value: 3.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 160 EVLRENDLLRKDVEVKESKLSSSMNSIKTFwSPELKKERALRKDEASKItiwkEQYRVVQEENQHMQMTIQALQDELRIQ 239
Cdd:PTZ00121 1179 EAARKAEEVRKAEELRKAEDARKAEAARKA-EEERKAEEARKAEDAKKA----EAVKKAEEAKKDAEEAKKAEEERNNEE 1253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 240 RDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHERQAKELfllrKTLEEMELRIETQKQTLNARD-ESIKKLLEMLQS 318
Cdd:PTZ00121 1254 IRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA----KKAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKK 1329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 319 KGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENSMLREEMHRRfenAPDSAKTKALQTviemkdSKISSMERGL 398
Cdd:PTZ00121 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK---KADAAKKKAEEK------KKADEAKKKA 1400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 399 RDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTEllalQTKLETLTNQFSDSKQHIEVL 478
Cdd:PTZ00121 1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE----AKKAEEAKKKAEEAKKADEAK 1476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 479 KESLTAKE-----QRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEE--KGTQAGEIHDLKDMLDVKE----RKVNV 547
Cdd:PTZ00121 1477 KKAEEAKKadeakKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEakKAEEAKKADEAKKAEEKKKadelKKAEE 1556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 548 LQK--KIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEidnykkd 625
Cdd:PTZ00121 1557 LKKaeEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE------- 1629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 626 lkdlkeKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEM 705
Cdd:PTZ00121 1630 ------EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 706 SDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEkndkDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEE 785
Cdd:PTZ00121 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE----DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 786 ARRREDNLNDSSQQLQDSLRKKD--DRIEELEEALRE-SVQITAEREMVLAQEESARTNAEKQVEElLMAMEKVKQELES 862
Cdd:PTZ00121 1780 VIEEELDEEDEKRRMEVDKKIKDifDNFANIIEGGKEgNLVINDSKEMEDSAIKEVADSKNMQLEE-ADAFEKHKFNKNN 1858
|
730 740 750
....*....|....*....|....*....|....*...
gi 27530920 863 MKAKlSSTQQSLAEKETHLtnlraeRRKHLEEVLEMKQ 900
Cdd:PTZ00121 1859 ENGE-DGNKEADFNKEKDL------KEDDEEEIEEADE 1889
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
695-946 |
3.19e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.16 E-value: 3.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 695 AALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEqv 774
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI-- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 775 ekkksaqmleearrrednlndssQQLQDSLRKKDDRIEELEEALRESVQITAErEMVLAQEESArtnaekQVEELLMAME 854
Cdd:COG4942 93 -----------------------AELRAELEAQKEELAELLRALYRLGRQPPL-ALLLSPEDFL------DAVRRLQYLK 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 855 KVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEvLEMKQEALLAAISEKDANIAllELSSSKKKTQEEVAALK 934
Cdd:COG4942 143 YLAPARREQAEELRADLAELAALRAELEAERAELEALLAE-LEEERAALEALKAERQKLLA--RLEKELAELAAELAELQ 219
|
250
....*....|..
gi 27530920 935 REKDRLVQQLKQ 946
Cdd:COG4942 220 QEAEELEALIAR 231
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
392-946 |
3.22e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 61.29 E-value: 3.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 392 SSMERGLRDLEEEIQMLKsnGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDS 471
Cdd:pfam15921 220 SAISKILRELDTEISYLK--GRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 472 KQHIEVLKESltAKEQRA------AILQTEVDALRLRLEEKETMLNKKTKQIQ------------------DMAEEKGTQ 527
Cdd:pfam15921 298 QSQLEIIQEQ--ARNQNSmymrqlSDLESTVSQLRSELREAKRMYEDKIEELEkqlvlanseltearterdQFSQESGNL 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 528 AGEIHDLKDMLDVKERKVNVLQKK--------------IENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEA 593
Cdd:pfam15921 376 DDQLQKLLADLHKREKELSLEKEQnkrlwdrdtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQG 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 594 LAEKERTIERLKEQRDRDE---REKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASS---GLKKDSR 667
Cdd:pfam15921 456 KNESLEKVSSLTAQLESTKemlRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRvdlKLQELQH 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 668 LKTLEIALEQKKEECLKMESQLKKAHEAALEARASPE-MSDRIQHLEREITRYKDESSKAQAEV-DRLLEiLKEVENEKN 745
Cdd:pfam15921 536 LKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIEnMTQLVGQHGRTAGAMQVEKAQLEKEInDRRLE-LQEFKILKD 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 746 DKDKKIAELERQVKD---QNKKVANLKHKE----QVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEAL 818
Cdd:pfam15921 615 KKDAKIRELEARVSDlelEKVKLVNAGSERlravKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTT 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 819 RESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEM 898
Cdd:pfam15921 695 NKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKL 774
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 27530920 899 KQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQ 946
Cdd:pfam15921 775 SQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAE 822
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
437-621 |
5.27e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.39 E-value: 5.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 437 KNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 516
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 517 IQDMAEEKGTQ----AGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEE 592
Cdd:COG4942 113 LYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEA 192
|
170 180
....*....|....*....|....*....
gi 27530920 593 ALAEKERTIERLKEQRDRDEREKQEEIDN 621
Cdd:COG4942 193 LKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
259-943 |
6.61e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 60.37 E-value: 6.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 259 VAELTEENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAE 338
Cdd:TIGR00618 181 LALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQ 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 339 AEMHVHHLESLLEQKEKENSMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEE 418
Cdd:TIGR00618 261 LLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSI 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 419 REEEMKQMEVYRSHSKFMKnkigQVKQELSRKdtELLALQTKLEtltnqfsdskQHIEVLKESLTAKEQRAAILQTEVDA 498
Cdd:TIGR00618 341 EEQRRLLQTLHSQEIHIRD----AHEVATSIR--EISCQQHTLT----------QHIHTLQQQKTTLTQKLQSLCKELDI 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 499 LRLRLEEKETMLNKKTKQIQDMAEEKGTQageihdlkdmldvkerkvnVLQKKIENLQEQLRDKEKQMSSLKERVKSLQA 578
Cdd:TIGR00618 405 LQREQATIDTRTSAFRDLQGQLAHAKKQQ-------------------ELQQRYAELCAAAITCTAQCEKLEKIHLQESA 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 579 DTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLA 658
Cdd:TIGR00618 466 QSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEE 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 659 SSGLKKDSRLKTLEIALEQkkeeclkMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILK 738
Cdd:TIGR00618 546 DVYHQLTSERKQRASLKEQ-------MQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALL 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 739 EVENEKNDKDKKIAELERQVKDQNKKvanLKHKEQVEKKKSAQMLEEARRREDnlndssqqlQDSLRKKDDRIEELEEAL 818
Cdd:TIGR00618 619 RKLQPEQDLQDVRLHLQQCSQELALK---LTALHALQLTLTQERVREHALSIR---------VLPKELLASRQLALQKMQ 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 819 RESVQITAEREMvLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEM 898
Cdd:TIGR00618 687 SEKEQLTYWKEM-LAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFN 765
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 27530920 899 KQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQ 943
Cdd:TIGR00618 766 NNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQ 810
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
219-910 |
7.45e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 59.98 E-value: 7.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 219 QEENQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGEPCVAELTEENFQRlhaeheRQAKELFLLRKTLEEmelrIETQ 298
Cdd:TIGR00618 239 QQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRA------RKAAPLAAHIKAVTQ----IEQQ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 299 KQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLaeaEMHVHHLESLLEQKEKENSMLREEMHRRFEnapDSAKTK 378
Cdd:TIGR00618 309 AQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRL---LQTLHSQEIHIRDAHEVATSIREISCQQHT---LTQHIH 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 379 ALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEM---KQMEVYRSHSKFMKNKIGQVKQELSRKDTELL 455
Cdd:TIGR00618 383 TLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAhakKQQELQQRYAELCAAAITCTAQCEKLEKIHLQ 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 456 ALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAailqtevdalrLRLEEKETMLNKKTKQIqdmaEEKGTQAGEIHDLK 535
Cdd:TIGR00618 463 ESAQSLKEREQQLQTKEQIHLQETRKKAVVLARL-----------LELQEEPCPLCGSCIHP----NPARQDIDNPGPLT 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 536 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREK 615
Cdd:TIGR00618 528 RRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAE 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 616 qeeidnykkDLKDLKEKVSLLQGdlsEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEA 695
Cdd:TIGR00618 608 ---------DMLACEQHALLRKL---QPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELL 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 696 ALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVE 775
Cdd:TIGR00618 676 ASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTV 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 776 KKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEremvlaqeesARTNAEKQVEELLMAMEK 855
Cdd:TIGR00618 756 LKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAE----------IGQEIPSDEDILNLQCET 825
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 27530920 856 VKQELESMKAKLSSTQQSLAEKETHLTNLrAERRKHLEEVleMKQEALLAAISEK 910
Cdd:TIGR00618 826 LVQEEEQFLSRLEEKSATLGEITHQLLKY-EECSKQLAQL--TQEQAKIIQLSDK 877
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
268-878 |
7.56e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 60.06 E-value: 7.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 268 QRLHAEHERQAKELFLLRKTLEEMELRIETQK-QTLNARDESIKKL-LEMLQSKGLSAKATEEDHERTRRLAEAEMHVHH 345
Cdd:TIGR00606 464 QQLEGSSDRILELDQELRKAERELSKAEKNSLtETLKKEVKSLQNEkADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKD 543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 346 LESLLEQKEKENSMLREEMhrrFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQ 425
Cdd:TIGR00606 544 KMDKDEQIRKIKSRHSDEL---TSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ 620
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 426 MEVYRSH------SKFMKNKIGQVKQEL--SRKDTELLALQTKL--ETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTE 495
Cdd:TIGR00606 621 LSSYEDKlfdvcgSQDEESDLERLKEEIekSSKQRAMLAGATAVysQFITQLTDENQSCCPVCQRVFQTEAELQEFISDL 700
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 496 VDALRL---RLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKER 572
Cdd:TIGR00606 701 QSKLRLapdKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPE 780
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 573 VKSLQADTTNTDTALTTLEEaLAEKERTIERLKEQRD------------RDEREKQEEIDNYKKDLKDLKEKVSLLQGDL 640
Cdd:TIGR00606 781 EESAKVCLTDVTIMERFQME-LKDVERKIAQQAAKLQgsdldrtvqqvnQEKQEKQHELDTVVSKIELNRKLIQDQQEQI 859
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 641 SEKEASLLDLKEHASSLASSGlkkdSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEmsDRIQHLEREITRYK 720
Cdd:TIGR00606 860 QHLKSKTNELKSEKLQIGTNL----QRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLE--KDQQEKEELISSKE 933
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 721 DESSKAQAEVDRLLEILKEVENEKNDKDKKIAE-LERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQ 799
Cdd:TIGR00606 934 TSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDgKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQ 1013
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 800 ---LQDSL--RKKDDRIEELEEALRE------SVQITAEREMVLAQEESARTNAEKQVeELLMAMEKVKQELESMKAKLS 868
Cdd:TIGR00606 1014 erwLQDNLtlRKRENELKEVEEELKQhlkemgQMQVLQMKQEHQKLEENIDLIKRNHV-LALGRQKGYEKEIKHFKKELR 1092
|
650
....*....|
gi 27530920 869 STQQSLAEKE 878
Cdd:TIGR00606 1093 EPQFRDAEEK 1102
|
|
| RBD-FIP |
pfam09457 |
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of ... |
1040-1080 |
8.75e-09 |
|
FIP domain; The FIP domain is the Rab11-binding domain (RBD) at the C-terminus of a family of Rab11-interacting proteins (FIPs). The Rab proteins constitute the largest family of small GTPases (>60 members in mammals). Among them Rab11 is a well characterized regulator of endocytic and recycling pathways. Rab11 associates with a broad range of post-Golgi organelles, including recycling endosomes.
Pssm-ID: 462805 [Multi-domain] Cd Length: 41 Bit Score: 51.96 E-value: 8.75e-09
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 27530920 1040 TRGQLQDELEKGERDNAELQEFANAILQQIADHCPDILEQV 1080
Cdd:pfam09457 1 SRDELQDALQKQEEENRRLEDYIDNILLRIMEHNPSILEVP 41
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
275-849 |
1.79e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.92 E-value: 1.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 275 ERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKE 354
Cdd:PRK03918 227 EKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 355 KENSMLREEMhrrfenapdsAKTKALQTVIEMKDSKISSMERGLRDLEEEI-QMLKSNGALSTEEREEEM---KQMEVYR 430
Cdd:PRK03918 307 DELREIEKRL----------SRLEEEINGIEERIKELEEKEERLEELKKKLkELEKRLEELEERHELYEEakaKKEELER 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 431 SHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLtaKEQRAAILQTEVDALRLRLEEKETML 510
Cdd:PRK03918 377 LKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAI--EELKKAKGKCPVCGRELTEEHRKELL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 511 NKKTKQIQDMAEEKGTqageihdlkdmLDVKERKVNVLQKKIENlqeqLRDKEKQMSSLKERVKSLQADTtntdtalttl 590
Cdd:PRK03918 455 EEYTAELKRIEKELKE-----------IEEKERKLRKELRELEK----VLKKESELIKLKELAEQLKELE---------- 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 591 eealaekertiERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKT 670
Cdd:PRK03918 510 -----------EKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKE 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 671 LEIALEQKKEECLKMESQLKKAHEAALEARASPemsDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKK 750
Cdd:PRK03918 579 LEELGFESVEELEERLKELEPFYNEYLELKDAE---KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 751 IAElerqvkDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREM 830
Cdd:PRK03918 656 YSE------EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREK 729
|
570
....*....|....*....
gi 27530920 831 VLAQEESARTNAEKQVEEL 849
Cdd:PRK03918 730 VKKYKALLKERALSKVGEI 748
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
193-956 |
5.38e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 57.29 E-value: 5.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 193 ELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQDSSS-------RTGEPCVAELTEE 265
Cdd:pfam02463 203 KEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKeeeklaqVLKENKEEEKEKK 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 266 NFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHH 345
Cdd:pfam02463 283 LQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 346 LESLLEQKEKENSMLREEMHRRFENAPDSAK--TKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEM 423
Cdd:pfam02463 363 KLQEKLEQLEEELLAKKKLESERLSSAAKLKeeELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELK 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 424 KQMEVYRSHSKFMKNKIGQVKQ-ELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLR 502
Cdd:pfam02463 443 QGKLTEEKEELEKQELKLLKDElELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGG 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 503 LEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTN 582
Cdd:pfam02463 523 RIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPI 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 583 TDTALTTLEEALAEKERTIERLKEQrDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGL 662
Cdd:pfam02463 603 LNLAQLDKATLEADEDDKRAKVVEG-ILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 663 KKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVEN 742
Cdd:pfam02463 682 QEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEE 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 743 EKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESV 822
Cdd:pfam02463 762 KEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALE 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 823 QITAEREMVLAQEESARTNAEKQVEELLmaMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEA 902
Cdd:pfam02463 842 LKEEQKLEKLAEEELERLEEEITKEELL--QELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEI 919
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 27530920 903 LLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMA 956
Cdd:pfam02463 920 EERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELG 973
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
707-932 |
9.53e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 55.61 E-value: 9.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 707 DRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEA 786
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 787 RRREDNLND-----SSQQLQDSLrkkdDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELlmamEKVKQELE 861
Cdd:COG3883 96 YRSGGSVSYldvllGSESFSDFL----DRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAEL----EALKAELE 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 27530920 862 SMKAKLsstQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAA 932
Cdd:COG3883 168 AAKAEL---EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
536-752 |
4.57e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 4.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 536 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREK 615
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 616 QEEIDNYKK-------DLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLAS--SGLKKD-SRLKTLEIALEQKKEECLKM 685
Cdd:COG4942 100 EAQKEELAEllralyrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREqaEELRADlAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 27530920 686 ESQLKKAHEAALEARAspEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIA 752
Cdd:COG4942 180 LAELEEERAALEALKA--ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
716-948 |
6.50e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 6.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 716 ITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLND 795
Cdd:TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 796 SSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLA 875
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 27530920 876 EKETHLTNLRAE--RRKHLEEVLEMKQEALLAAISEKDAniALLELSSSKKKTQEEVAALKREKDRLVQQLKQQT 948
Cdd:TIGR02168 327 ELESKLDELAEElaELEEKLEELKEELESLEAELEELEA--ELEELESRLEELEEQLETLRSKVAQLELQIASLN 399
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
437-617 |
9.28e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.52 E-value: 9.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 437 KNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEeketmlnkktKQ 516
Cdd:COG3883 22 QKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG----------ER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 517 IQDMAEEKGT--------QAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALT 588
Cdd:COG3883 92 ARALYRSGGSvsyldvllGSESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180
....*....|....*....|....*....
gi 27530920 589 TLEEALAEKERTIERLKEQRDRDEREKQE 617
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAE 200
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
504-943 |
1.34e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 52.42 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 504 EEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNT 583
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 584 DTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLK 663
Cdd:pfam05483 309 MSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 664 KDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILK----- 738
Cdd:pfam05483 389 KSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKtseeh 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 739 ----------EVENEK-------NDKDKKIAELERQVKDQNKKVANLK-HKEQVE--KKKSAQML---EEARRREDNLND 795
Cdd:pfam05483 469 ylkevedlktELEKEKlknieltAHCDKLLLENKELTQEASDMTLELKkHQEDIIncKKQEERMLkqiENLEEKEMNLRD 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 796 SSQQLQDSLRKKDD----RIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQ 871
Cdd:pfam05483 549 ELESVREEFIQKGDevkcKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAEN 628
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 27530920 872 QSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQ 943
Cdd:pfam05483 629 KQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQH 700
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
701-954 |
2.56e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 2.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 701 ASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDK---KIAELERQVKDQNKKVANLKHKeqveKK 777
Cdd:PRK03918 187 RTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEElkeEIEELEKELESLEGSKRKLEEK----IR 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 778 KSAQMLEEARRREDNLNDSSQQLQdSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELlmamEKVK 857
Cdd:PRK03918 263 ELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEL----EEKE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 858 QELESMKAKLSSTQQSLAEKETHLTNLraERRKHLEEVLEmKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREK 937
Cdd:PRK03918 338 ERLEELKKKLKELEKRLEELEERHELY--EEAKAKKEELE-RLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARI 414
|
250
....*....|....*..
gi 27530920 938 DRLVQQLKQQTQNRMKL 954
Cdd:PRK03918 415 GELKKEIKELKKAIEEL 431
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
273-756 |
2.69e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 2.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 273 EHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQ 352
Cdd:PRK03918 294 EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 353 KEKENSMLREEMHRRFENAPDSAKTKALQTVIEMKD--SKISSMERGLRDLEEEIQMLKSN-------GALSTEEREEEM 423
Cdd:PRK03918 374 LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKitARIGELKKEIKELKKAIEELKKAkgkcpvcGRELTEEHRKEL 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 424 kqMEVYRSHSKfmknKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRL 503
Cdd:PRK03918 454 --LEEYTAELK----RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEY 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 504 EEKETMLNKKTKQIQDMAEEkgtqAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKE-KQMSSLKERVKSLQADTTN 582
Cdd:PRK03918 528 EKLKEKLIKLKGEIKSLKKE----LEKLEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEPFYNE 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 583 TDTALTTLEEaLAEKERTIERLKEQRDrderEKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASllDLKEHASSLASSGL 662
Cdd:PRK03918 604 YLELKDAEKE-LEREEKELKKLEEELD----KAFEELAETEKRLEELRKELEELEKKYSEEEYE--ELREEYLELSRELA 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 663 KKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDE-SSKAQAEVDRLL-EILKEV 740
Cdd:PRK03918 677 GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALlKERALSKVGEIAsEIFEEL 756
|
490
....*....|....*.
gi 27530920 741 ENEKNDKDKKIAELER 756
Cdd:PRK03918 757 TEGKYSGVRVKAEENK 772
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
446-620 |
3.31e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.54 E-value: 3.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 446 ELSRKDTELLALQTKLETLtnqfsdsKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLnkktKQIQDMAEEKG 525
Cdd:COG1579 11 DLQELDSELDRLEHRLKEL-------PAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEI----EEVEARIKKYE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 526 TQAGEIHDLKDMldvkerkvNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLK 605
Cdd:COG1579 80 EQLGNVRNNKEY--------EALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEEL 151
|
170
....*....|....*
gi 27530920 606 EQRDRDEREKQEEID 620
Cdd:COG1579 152 AELEAELEELEAERE 166
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
440-888 |
3.77e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 3.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 440 IGQVKQELSRKDTELLALQTKLETLTNQFSDS--------KQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLN 511
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNggdrleqlEREIERLERELEERERRRARLEALLAALGLPLPASAEEFA 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 512 KKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKvnvlqkkienLQEQLRDKEKQMSSLKERVKS----LQADTTNTDTAL 587
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRD----------LRRELRELEAEIASLERRKSNiparLLALRDALAEAL 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 588 TTLEEAL---------AEKERT----IER-LKEQR------DRDEREKQEEIDNYK----------KDLKDLKEKVSLLQ 637
Cdd:COG4913 454 GLDEAELpfvgelievRPEEERwrgaIERvLGGFAltllvpPEHYAAALRWVNRLHlrgrlvyervRTGLPDPERPRLDP 533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 638 GDLSEK------------EASLL------------DLKEHASSLASSGL--------KKDSRLKTLEI---------ALE 676
Cdd:COG4913 534 DSLAGKldfkphpfrawlEAELGrrfdyvcvdspeELRRHPRAITRAGQvkgngtrhEKDDRRRIRSRyvlgfdnraKLA 613
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 677 QKKEECLKMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSK---AQAEVDRLLEILKEVENEKNDkdkkIAE 753
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDvasAEREIAELEAELERLDASSDD----LAA 689
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 754 LERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQD-SLRKKDDRIEELEEALRESVQITAEREMVL 832
Cdd:COG4913 690 LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAaEDLARLELRALLEERFAAALGDAVERELRE 769
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 27530920 833 AQEES---ARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAER 888
Cdd:COG4913 770 NLEERidaLRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEDG 828
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
751-951 |
3.88e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 3.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 751 IAELERQVKdqnkkvanlKHKEQVEKKKSAQML-EEARRREDNLndssqqlqdSLRKKDDRIEELEEALRESVQITAERE 829
Cdd:COG1196 195 LGELERQLE---------PLERQAEKAERYRELkEELKELEAEL---------LLLKLRELEAELEELEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 830 mvlaQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISE 909
Cdd:COG1196 257 ----ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 27530920 910 KDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNR 951
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
445-907 |
4.60e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 4.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 445 QELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKEtmLNKKTKQIQDMAEEK 524
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA--LEAELAELPERLEEL 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 525 GTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLR-DKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIER 603
Cdd:COG4717 152 EERLEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQ 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 604 LKEQRDRDEREKQeeidnykkdlkdlkekvsllqgdLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECL 683
Cdd:COG4717 232 LENELEAAALEER-----------------------LKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLAL 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 684 KMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQnk 763
Cdd:COG4717 289 LFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE-- 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 764 kvANLKHKEQVEKKKSAQMLEEARRREDNLNDSsQQLQDSLRKKDDRIEELEEALRESVQITAEREMvlaqeesartnaE 843
Cdd:COG4717 367 --ELEQEIAALLAEAGVEDEEELRAALEQAEEY-QELKEELEELEEQLEELLGELEELLEALDEEEL------------E 431
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 27530920 844 KQVEELLMAMEKVKQELESMKAKLSSTQQSL--AEKETHLTNLRAERRKHLEEVLEMKQEALLAAI 907
Cdd:COG4717 432 EELEELEEELEELEEELEELREELAELEAELeqLEEDGELAELLQELEELKAELRELAEEWAALKL 497
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
533-945 |
6.19e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 6.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 533 DLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLqadttntDTALTTLEEALAEKERTIERLKEQRdrde 612
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEI-------SSELPELREELEKLEKEVKELEELK---- 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 613 rekqEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLAssglKKDSRLKTleiaLEQKKEECLKMESQLKka 692
Cdd:PRK03918 238 ----EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE----EKVKELKE----LKEKAEEYIKLSEFYE-- 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 693 heaalearaspEMSDRIQHLEREITRYKDESSKAQAEVDRLLEI---LKEVENEKNDKDKKIAELERQVKDQNKKVANLK 769
Cdd:PRK03918 304 -----------EYLDELREIEKRLSRLEEEINGIEERIKELEEKeerLEELKKKLKELEKRLEELEERHELYEEAKAKKE 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 770 HKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEealresvQITAEREMVLAQEESART-----NAEK 844
Cdd:PRK03918 373 ELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELK-------KEIKELKKAIEELKKAKGkcpvcGREL 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 845 QVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKK 924
Cdd:PRK03918 446 TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAE 525
|
410 420
....*....|....*....|....
gi 27530920 925 ---KTQEEVAALKREKDRLVQQLK 945
Cdd:PRK03918 526 eyeKLKEKLIKLKGEIKSLKKELE 549
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
697-900 |
7.30e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 7.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 697 LEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEIlKEVENEKNDKDKKIAELERQVKDQNKKVANLKH------ 770
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDLERAHEALEDAREQIELLEPI-RELAERYAAARERLAELEYLRAALRLWFAQRRLelleae 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 771 --KEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKD-DRIEELEEALRESVQITAEREMVLAQ-EESART---NAE 843
Cdd:COG4913 297 leELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARlEALLAAlglPLP 376
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 27530920 844 KQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQ 900
Cdd:COG4913 377 ASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
388-733 |
7.63e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 7.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 388 DSKIssmERGLRDLEEEIQMLKSNGALsTEEREEEMKQMEVYRSHS-KFMKNKIGQVKQELSRKDTELLALQTKLETLTN 466
Cdd:TIGR02169 169 DRKK---EKALEELEEVEENIERLDLI-IDEKRQQLERLRREREKAeRYQALLKEKREYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 467 QFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEK--ETMLNKKTK--------------------QIQDMAEEK 524
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeEEQLRVKEKigeleaeiaslersiaekerELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 525 GTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERL 604
Cdd:TIGR02169 325 AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 605 KEQRDRDEREKQEeidnykkdlkdlkekvslLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLK 684
Cdd:TIGR02169 405 KRELDRLQEELQR------------------LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK 466
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 27530920 685 MESQLKKaheaalearaspemsdriqhLEREITRYKDESSKAQAEVDRL 733
Cdd:TIGR02169 467 YEQELYD--------------------LKEEYDRVEKELSKLQRELAEA 495
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
708-868 |
9.85e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.00 E-value: 9.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 708 RIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVAnlKHKEQVEKKKSAQMLEEAR 787
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIK--KYEEQLGNVRNNKEYEALQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 788 RREDNLNDSSQQLQDSLRKKDDRIEELEEALREsvqITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKL 867
Cdd:COG1579 96 KEIESLKRRISDLEDEILELMERIEELEEELAE---LEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
.
gi 27530920 868 S 868
Cdd:COG1579 173 P 173
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
288-864 |
1.25e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 49.51 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 288 LEEMELRIETQKQTLNARDESIKKLLEMLQSKGL---SAKATEEDHERTRRLAEAEmhVHHLESLLEQKEKENSMLREEM 364
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLeleNIKKQIADDEKSHSITLKE--IERLSIEYNNAMDDYNNLKSAL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 365 HRrfenapdsakTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSngalsTEEREEEMKQMEVYRSHSKF-----MKNK 439
Cdd:PRK01156 242 NE----------LSSLEDMKNRYESEIKTAESDLSMELEKNNYYKE-----LEERHMKIINDPVYKNRNYIndyfkYKND 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 440 IGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRL--RLEEKETMLNKKTKQI 517
Cdd:PRK01156 307 IENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYlkSIESLKKKIEEYSKNI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 518 QDMAEEKGTQAG-----------EIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVK-----------S 575
Cdd:PRK01156 387 ERMSAFISEILKiqeidpdaikkELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVcpvcgttlgeeK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 576 LQADTTNTDTALTTLEEALAEKERTI----ERLKEQRDRDEREKQEEIDNYKKDLKDlkekvsllqgdLSEKEASLLDLK 651
Cdd:PRK01156 467 SNHIINHYNEKKSRLEEKIREIEIEVkdidEKIVDLKKRKEYLESEEINKSINEYNK-----------IESARADLEDIK 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 652 EHASSLASSGLKK---DSRLKTLEIA-LEQKKEECLKMESQLKKAHEAALEARaSPEMSDRIQHLEreitrykdesskaq 727
Cdd:PRK01156 536 IKINELKDKHDKYeeiKNRYKSLKLEdLDSKRTSWLNALAVISLIDIETNRSR-SNEIKKQLNDLE-------------- 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 728 aevDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKvanlkhKEQVEKKKSAqmLEEARRREDNLNDSS---QQLQDSL 804
Cdd:PRK01156 601 ---SRLQEIEIGFPDDKSYIDKSIREIENEANNLNNK------YNEIQENKIL--IEKLRGKIDNYKKQIaeiDSIIPDL 669
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 805 RKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMK 864
Cdd:PRK01156 670 KEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMK 729
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
549-862 |
1.68e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.97 E-value: 1.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 549 QKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLK-EQRDRD-EREKQEEIdnykKDL 626
Cdd:pfam17380 298 QERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRqEERKRElERIRQEEI----AME 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 627 KDLKEKVSLLQGDLSEKEASLLDLKEHAsslassglkkdSRLKTLEIALEQKKEECLKMESQLKKAHEAALEAraspEMS 706
Cdd:pfam17380 374 ISRMRELERLQMERQQKNERVRQELEAA-----------RKVKILEEERQRKIQQQKVEMEQIRAEQEEARQR----EVR 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 707 DRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKiAELERQVKDQNKKVAnlkhkEQVEKKKSAQMLEEA 786
Cdd:pfam17380 439 RLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKE-KRDRKRAEEQRRKIL-----EKELEERKQAMIEEE 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 787 RRREdNLNDSSQQLQDSLRKKDDRiEELEEALRESVQITAER----EMVLAQEESARTNAEKQVEELLMAM---EKVKQE 859
Cdd:pfam17380 513 RKRK-LLEKEMEERQKAIYEEERR-REAEEERRKQQEMEERRriqeQMRKATEERSRLEAMEREREMMRQIvesEKARAE 590
|
...
gi 27530920 860 LES 862
Cdd:pfam17380 591 YEA 593
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
480-707 |
1.74e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 480 ESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQL 559
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 560 RDKEKQmssLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDE------REKQEEIDNYKKDLKDLKEKV 633
Cdd:COG4942 100 EAQKEE---LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARReqaeelRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 27530920 634 SLLQGDLSEKEASLLDLKEHASSLASsglKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMSD 707
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLA---RLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
228-892 |
1.98e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 48.92 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 228 TIQALQDELRIQRDLNQLFQQDSSsrtgepCVAELTEENFQRLHAEHERQakelfllrKTLEEMELRIETQKQTLNARDE 307
Cdd:COG5022 818 CIIKLQKTIKREKKLRETEEVEFS------LKAEVLIQKFGRSLKAKKRF--------SLLKKETIYLQSAQRVELAERQ 883
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 308 SIKKLLEMLQSKGLSAKATEEDhertrrlaeaemhvhhlESLLEQKEKENSMLREEMHRRfenapdSAKTKALQTVIEMK 387
Cdd:COG5022 884 LQELKIDVKSISSLKLVNLELE-----------------SEIIELKKSLSSDLIENLEFK------TELIARLKKLLNNI 940
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 388 DSKI-SSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETL-- 464
Cdd:COG5022 941 DLEEgPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLke 1020
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 465 TNQFSDSKQHIEVLKESLTAKEQRaailQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKgtqageihDLKDMLDVKERK 544
Cdd:COG5022 1021 LPVEVAELQSASKIISSESTELSI----LKPLQKLKGLLLLENNQLQARYKALKLRRENS--------LLDDKQLYQLES 1088
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 545 VNVLQKKIENLQEQLRDKEkqmSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKqEEIDNYKK 624
Cdd:COG5022 1089 TENLLKTINVKDLEVTNRN---LVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLEL-DGLFWEAN 1164
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 625 DLKDLKEKVSLLQGDLSEKEASLLDLKEHASSlassglkkdSRLKTLEIaleqkkeeclKMESQLKKAHEAALEARASPE 704
Cdd:COG5022 1165 LEALPSPPPFAALSEKRLYQSALYDEKSKLSS---------SEVNDLKN----------ELIALFSKIFSGWPRGDKLKK 1225
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 705 MSDRIQHLEREITRYKDESS-------KAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVA-----NLKHKE 772
Cdd:COG5022 1226 LISEGWVPTEYSTSLKGFNNlnkkfdtPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINvglfnALRTKA 1305
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 773 QVEKKKSAQMLEEARRREDN------LNDSSQQLQ------DSLRKKDDRIEELEEaLRESVQ--ITAEREMVLAQEESA 838
Cdd:COG5022 1306 SSLRWKSATEVNYNSEELDDwcrefeISDVDEELEeliqavKVLQLLKDDLNKLDE-LLDACYslNPAEIQNLKSRYDPA 1384
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 27530920 839 --RTNAEKQVEELLMAmekvkqelESMKAKLSSTQQSLAEKETHLTNLRAERRKHL 892
Cdd:COG5022 1385 dkENNLPKEILKKIEA--------LLIKQELQLSLEGKDETEVHLSEIFSEEKSLI 1432
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
432-944 |
2.09e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 432 HSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLeeketmLN 511
Cdd:COG4913 261 AERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI------RG 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 512 KKTKQIQDMAEekgtqagEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQmssLKERVKSLQADTTNTDTALTTLE 591
Cdd:COG4913 335 NGGDRLEQLER-------EIERLERELEERERRRARLEALLAALGLPLPASAEE---FAALRAEAAALLEALEEELEALE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 592 EALAEKERTIERLKEQRdrdeREKQEEIDNYKKDLKDLKEKV----SLLQGDLSEKEAS------LLDLKEHAS------ 655
Cdd:COG4913 405 EALAEAEAALRDLRREL----RELEAEIASLERRKSNIPARLlalrDALAEALGLDEAElpfvgeLIEVRPEEErwrgai 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 656 -----SLASS----------------GLKKDSRLKTLEIALEQKKEECL---------KMESQLKKAH---EAALEARAS 702
Cdd:COG4913 481 ervlgGFALTllvppehyaaalrwvnRLHLRGRLVYERVRTGLPDPERPrldpdslagKLDFKPHPFRawlEAELGRRFD 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 703 PEMSDRIQHLERE---ITR---YKDESS----KAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLK-HK 771
Cdd:COG4913 561 YVCVDSPEELRRHpraITRagqVKGNGTrhekDDRRRIRSRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEaEL 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 772 EQVEKKKSA-QMLEEARRREDNLndssQQLQDSLRKKDDRIEELEEALREsvqitaeremvLAQeesartnAEKQVEELL 850
Cdd:COG4913 641 DALQERREAlQRLAEYSWDEIDV----ASAEREIAELEAELERLDASSDD-----------LAA-------LEEQLEELE 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 851 MAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAErrkhLEEVLEMKQEALLAAISEKDANIALLELSSSKKKT-QEE 929
Cdd:COG4913 699 AELEELEEELDELKGEIGRLEKELEQAEEELDELQDR----LEAAEDLARLELRALLEERFAAALGDAVERELRENlEER 774
|
570
....*....|....*
gi 27530920 930 VAALKREKDRLVQQL 944
Cdd:COG4913 775 IDALRARLNRAEEEL 789
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
445-577 |
2.28e-05 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 48.04 E-value: 2.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 445 QELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEK 524
Cdd:PRK09039 46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQEL 125
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 27530920 525 GTQAGEIHDlkdmldvKERKVNVLQKKIENLQEQL------------RDKEKQM----------SSLKERVKSLQ 577
Cdd:PRK09039 126 DSEKQVSAR-------ALAQVELLNQQIAALRRQLaaleaaldasekRDRESQAkiadlgrrlnVALAQRVQELN 193
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
654-868 |
3.53e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 654 ASSLASSGLKKDSRLKTLEiALEQKKEECLKMESQLKKAHEAALEARAspEMSDRIQHLEREITRYKDESSKAQAEVDRL 733
Cdd:COG4942 12 ALAAAAQADAAAEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLA--ALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 734 LEILKEVENEKNDKDKKIAELER--QVKDQNKKVANLKHKEQVEK------------KKSAQMLEEARRREDNLNDSSQQ 799
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRalYRLGRQPPLALLLSPEDFLDavrrlqylkylaPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 27530920 800 LQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLS 868
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
445-657 |
4.79e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 4.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 445 QELSRKDTELLALQTKLETLtnqfsdskQHIEVLKESLTAKEQRAAILQTEVDALRLrlEEKETMLNKKTKQIQDMAEEK 524
Cdd:COG4913 235 DDLERAHEALEDAREQIELL--------EPIRELAERYAAARERLAELEYLRAALRL--WFAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 525 GTQAGEIHDLKDMLDVKERKVNVLQ--------KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAE 596
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEaqirgnggDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 27530920 597 KERTIERLKEQRDRDEREKQEEIDnykkdlkDLKEKVSLLQGDLSEKEASLLDLKEHASSL 657
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALA-------EAEAALRDLRRELRELEAEIASLERRKSNI 438
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
690-875 |
5.29e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.08 E-value: 5.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 690 KKAHEAALEARaspemsDRIQHLEREITRYKDES-SKAQAEVDRLLEilkEVENEKNDKDKKIAELERQVKDqnkKVANL 768
Cdd:PRK12704 31 AKIKEAEEEAK------RILEEAKKEAEAIKKEAlLEAKEEIHKLRN---EFEKELRERRNELQKLEKRLLQ---KEENL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 769 KHK-EQVEKKKSA--QMLEEARRREDNLNDSSQQLQdslRKKDDRIEELEEAlresVQITAE--REMVLAQ-EESARTNA 842
Cdd:PRK12704 99 DRKlELLEKREEEleKKEKELEQKQQELEKKEEELE---ELIEEQLQELERI----SGLTAEeaKEILLEKvEEEARHEA 171
|
170 180 190
....*....|....*....|....*....|....*
gi 27530920 843 EKQVEEllmAMEKVKQELEsMKAK--LSSTQQSLA 875
Cdd:PRK12704 172 AVLIKE---IEEEAKEEAD-KKAKeiLAQAIQRCA 202
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
748-909 |
5.84e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 5.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 748 DKKIAELERQVKDQNKKVANLKHkeqvEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEAL------RES 821
Cdd:COG1579 16 DSELDRLEHRLKELPAELAELED----ELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLgnvrnnKEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 822 VQITAEremvLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEmKQE 901
Cdd:COG1579 92 EALQKE----IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA-ERE 166
|
....*...
gi 27530920 902 ALLAAISE 909
Cdd:COG1579 167 ELAAKIPP 174
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
593-826 |
6.28e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 6.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 593 ALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLE 672
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 673 IALEQKKEEclkMESQLKKAHEAALEARASPEMS-DRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKI 751
Cdd:COG4942 97 AELEAQKEE---LAELLRALYRLGRQPPLALLLSpEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 27530920 752 AELERQVKDQNKKVANLkhkeQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITA 826
Cdd:COG4942 174 AELEALLAELEEERAAL----EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
335-948 |
6.42e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.02 E-value: 6.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 335 RLAEAEMHVHHLESLLEQKEKENSMLREEMHRRFENAPDSAKTKALQTViEMKDSKISsMERGL---RDLEEEIQMLKSN 411
Cdd:pfam05483 248 QITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTK-ELEDIKMS-LQRSMstqKALEEDLQIATKT 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 412 GALSTEEREEEMKQMEVYRSHSKFmknkigqvkqelsrkdtellaLQTKLETLTNQfsdskqhievLKESLTAKEQRaai 491
Cdd:pfam05483 326 ICQLTEEKEAQMEELNKAKAAHSF---------------------VVTEFEATTCS----------LEELLRTEQQR--- 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 492 LQTEVDALRLRLEEketmLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVlQKKIENLQEQLRDKEKQMSSLke 571
Cdd:pfam05483 372 LEKNEDQLKIITME----LQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDE-KKQFEKIAEELKGKEQELIFL-- 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 572 rvksLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQgdlsEKEASLLDLK 651
Cdd:pfam05483 445 ----LQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQ----EASDMTLELK 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 652 EHASSLASSGLKKDSRLKTLEIALEQkkeeclkmESQLKKAHEAALEaraspEMSDRIQHLEREITRYKDESSKAQAEVD 731
Cdd:pfam05483 517 KHQEDIINCKKQEERMLKQIENLEEK--------EMNLRDELESVRE-----EFIQKGDEVKCKLDKSEENARSIEYEVL 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 732 RLLEILKEVENEKNDkdkkiaeLERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNdssqQLQDSLRKKDDRI 811
Cdd:pfam05483 584 KKEKQMKILENKCNN-------LKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVN----KLELELASAKQKF 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 812 EELEEALRESVQITA-EREMVLAQEESARTNAEKQVeellmameKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRK 890
Cdd:pfam05483 653 EEIIDNYQKEIEDKKiSEEKLLEEVEKAKAIADEAV--------KLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERD 724
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 27530920 891 H---LEEVLEMKQEALLAAISEKDANIAlLELSSSKKKTQEEvaalKREKDRLVQQLKQQT 948
Cdd:pfam05483 725 SelgLYKNKEQEQSSAKAALEIELSNIK-AELLSLKKQLEIE----KEEKEKLKMEAKENT 780
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
639-820 |
7.20e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 7.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 639 DLSEKEASLLDLKEHASSLASS--------GLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARAspemsdRIQ 710
Cdd:COG4913 246 DAREQIELLEPIRELAERYAAArerlaeleYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEA------RLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 711 HLEREITRYKDEssKAQAEVDRLLEILKEVEneknDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRRE 790
Cdd:COG4913 320 ALREELDELEAQ--IRGNGGDRLEQLEREIE----RLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALL 393
|
170 180 190
....*....|....*....|....*....|
gi 27530920 791 DNLNDSSQQLQDSLRKKDDRIEELEEALRE 820
Cdd:COG4913 394 EALEEELEALEEALAEAEAALRDLRRELRE 423
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
669-820 |
7.65e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.77 E-value: 7.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 669 KTLEIALEQKKEEclkmesqlkkaheaaLEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKD 748
Cdd:COG2433 376 LSIEEALEELIEK---------------ELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKD 440
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 27530920 749 KKIAELERQVKDqnkkvanLKHKEQVEKKKSAqmlEEARRREDNlndssQQLQDSLRKKDDRIEELEEALRE 820
Cdd:COG2433 441 ERIERLERELSE-------ARSEERREIRKDR---EISRLDREI-----ERLERELEEERERIEELKRKLER 497
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
419-953 |
8.72e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.71 E-value: 8.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 419 REEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLA----LQTKLETLTNQFSDS----------KQHIEVLKESLTA 484
Cdd:pfam01576 3 QEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEeknaLQEQLQAETELCAEAeemrarlaarKQELEEILHELES 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 485 K----EQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLR 560
Cdd:pfam01576 83 RleeeEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERIS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 561 DKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERT---IERLKEQRDRDEREKQEEIdnykkdlKDLKEKVSLLQ 637
Cdd:pfam01576 163 EFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGrqeLEKAKRKLEGESTDLQEQI-------AELQAQIAELR 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 638 GDLSEKEASLLDLKehaSSLASSGLKKDSRLKTLEIALEQKKEECLKMESqlkkahEAALEARASPEMSDRIQHLEREIT 717
Cdd:pfam01576 236 AQLAKKEEELQAAL---ARLEEETAQKNNALKKIRELEAQISELQEDLES------ERAARNKAEKQRRDLGEELEALKT 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 718 RYKD--ESSKAQAEVDRLLEilKEVENEKNDKDKKIAELERQVKDQNKkvanlKHKEQVEkkKSAQMLEEARRREDNLND 795
Cdd:pfam01576 307 ELEDtlDTTAAQQELRSKRE--QEVTELKKALEEETRSHEAQLQEMRQ-----KHTQALE--ELTEQLEQAKRNKANLEK 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 796 SSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQsla 875
Cdd:pfam01576 378 AKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEG--- 454
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 27530920 876 eKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMK 953
Cdd:pfam01576 455 -KNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKK 531
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
707-953 |
9.97e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 46.22 E-value: 9.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 707 DRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENekndkdkkiaelerqvkdqnkkvANLKHKEQVEkkksaqmLEEA 786
Cdd:COG0497 165 RAWRALKKELEELRADEAERARELDLLRFQLEELEA-----------------------AALQPGEEEE-------LEEE 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 787 RRREDNlndsSQQLQDSLRKKDDRIEELEEALRESVQiTAEREMV-LAQEESARTNAEKQVEELLMAMEKVKQELESMKA 865
Cdd:COG0497 215 RRRLSN----AEKLREALQEALEALSGGEGGALDLLG-QALRALErLAEYDPSLAELAERLESALIELEEAASELRRYLD 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 866 KLSSTQQSLAEKETHLTNLRAERRKH---LEEVLEMKQEAL--LAAISEKDANIALLElssskkktqEEVAALKREKDRL 940
Cdd:COG0497 290 SLEFDPERLEEVEERLALLRRLARKYgvtVEELLAYAEELRaeLAELENSDERLEELE---------AELAEAEAELLEA 360
|
250
....*....|...
gi 27530920 941 VQQLkqqTQNRMK 953
Cdd:COG0497 361 AEKL---SAARKK 370
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
763-936 |
1.12e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.92 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 763 KKVANLKHKEqvEKKKSAQMLEEARRREDNLNDssQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESartNA 842
Cdd:PRK12704 26 KKIAEAKIKE--AEEEAKRILEEAKKEAEAIKK--EALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEE---NL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 843 EKQVEELlmamEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEallaaisekDANIALLElsSS 922
Cdd:PRK12704 99 DRKLELL----EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE---------EAKEILLE--KV 163
|
170
....*....|....
gi 27530920 923 KKKTQEEVAALKRE 936
Cdd:PRK12704 164 EEEARHEAAVLIKE 177
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
436-763 |
1.13e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 45.66 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 436 MKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTK 515
Cdd:COG4372 43 LQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQK 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 516 QIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERvkSLQADTTNTDTALTTLEEALA 595
Cdd:COG4372 123 ERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEA--EAEQALDELLKEANRNAEKEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 596 EKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIAL 675
Cdd:COG4372 201 ELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEI 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 676 EQKKEECLKMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELE 755
Cdd:COG4372 281 AALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLDNDVLELLS 360
|
....*...
gi 27530920 756 RQVKDQNK 763
Cdd:COG4372 361 KGAEAGVA 368
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
594-820 |
1.30e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 594 LAEKERTIERLKEQRD--RDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDlkehasslassglkkdSRLKTL 671
Cdd:COG4913 237 LERAHEALEDAREQIEllEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLE----------------AELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 672 EIALEQKKEECLKMESQLKKAHEAALEARASPEMS--DRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDK 749
Cdd:COG4913 301 RAELARLEAELERLEARLDALREELDELEAQIRGNggDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAE 380
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 27530920 750 KIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLndssQQLQDSLRKKDDRIEELEEALRE 820
Cdd:COG4913 381 EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELREL----EAEIASLERRKSNIPARLLALRD 447
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
398-788 |
1.51e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 398 LRDLEEEIQMLKSNGAL---STEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDT--ELLALQTKLETLTNQFSDSK 472
Cdd:COG4717 73 LKELEEELKEAEEKEEEyaeLQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyqELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 473 QHIEVLKEsltaKEQRAAILQTEVDALRLRLEEKETMLNKKT-KQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKK 551
Cdd:COG4717 153 ERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATeEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 552 IENLQEQLRDKEKQ-----------------------------MSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIE 602
Cdd:COG4717 229 LEQLENELEAAALEerlkearlllliaaallallglggsllslILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 603 RLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSR----------LKTLE 672
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAallaeagvedEEELR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 673 IALEQK------KEECLKMESQL---KKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENE 743
Cdd:COG4717 389 AALEQAeeyqelKEELEELEEQLeelLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 27530920 744 KN--DKDKKIAELERQVKDQNKKVANLK--------HKEQVEKKKSAQMLEEARR 788
Cdd:COG4717 469 GElaELLQELEELKAELRELAEEWAALKlalelleeAREEYREERLPPVLERASE 523
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
389-874 |
1.68e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.20 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 389 SKISSMERGLRDLEE----EIQMLKSNGALSTEEREEEMKQME-VYRSHSKFMKN--KIGQVKQELSRKDTELLALQTKL 461
Cdd:TIGR01612 1197 NEIAEIEKDKTSLEEvkgiNLSYGKNLGKLFLEKIDEEKKKSEhMIKAMEAYIEDldEIKEKSPEIENEMGIEMDIKAEM 1276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 462 ETLTNQFSDSKQHievlkeSLTAKEQRAAILQTEVDALRLRLE-EKETMLNKKTKQIQDMAEEKGTQAGEIH-------- 532
Cdd:TIGR01612 1277 ETFNISHDDDKDH------HIISKKHDENISDIREKSLKIIEDfSEESDINDIKKELQKNLLDAQKHNSDINlylneian 1350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 533 --------DLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKslqadttnTDTALTTLEEALAEKE--RTIE 602
Cdd:TIGR01612 1351 iynilklnKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDIN--------LEECKSKIESTLDDKDidECIK 1422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 603 RLKEQRDRDEREkQEEIDNYKKDLKDLKEKVSLLQGDL-------------------SEKEASLLDLKEHASSLASSGLK 663
Cdd:TIGR01612 1423 KIKELKNHILSE-ESNIDTYFKNADENNENVLLLFKNIemadnksqhilkikkdnatNDHDFNINELKEHIDKSKGCKDE 1501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 664 KDSRLKTLE---IALEQKKEECLKMesqLKKAHEAALEARASPEMSDRiqhlEREITRYKDESSKAQAEVDRLLEILKEV 740
Cdd:TIGR01612 1502 ADKNAKAIEknkELFEQYKKDVTEL---LNKYSALAIKNKFAKTKKDS----EIIIKEIKDAHKKFILEAEKSEQKIKEI 1574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 741 ENEK---------NDK-DKKIAELERQVKD-QNK--KVANLKHK--------EQVEKKKSAQMLEEARRREDNLNDSSQQ 799
Cdd:TIGR01612 1575 KKEKfrieddaakNDKsNKAAIDIQLSLENfENKflKISDIKKKindclketESIEKKISSFSIDSQDTELKENGDNLNS 1654
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 27530920 800 LQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKV-KQELESMKAKLSSTQQSL 874
Cdd:TIGR01612 1655 LQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIAnKEEIESIKELIEPTIENL 1730
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
479-859 |
1.71e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 479 KESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIE-NLQE 557
Cdd:pfam02463 180 EETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIEsSKQE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 558 QLRDKEKQMSSLKERVKSLQADTTNTDTALT--TLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSL 635
Cdd:pfam02463 260 IEKEEEKLAQVLKENKEEEKEKKLQEEELKLlaKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 636 LQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHE-AALEARASPEMSDRIQHLER 714
Cdd:pfam02463 340 LEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELElKSEEEKEAQLLLELARQLED 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 715 EITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLN 794
Cdd:pfam02463 420 LLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERS 499
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 27530920 795 DSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQE 859
Cdd:pfam02463 500 QKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQ 564
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
264-562 |
2.11e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.60 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 264 EENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTL-NARDESIKKLLEMLQSKGLSAKATEE-----DHERTRRLA 337
Cdd:pfam12128 610 EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALkNARLDLRRLFDEKQSEKDKKNKALAErkdsaNERLNSLEA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 338 EAEMHVHHLESLLEQKE---KENSMLREEMHRRFENAPDS-----------------AKTKALQTviEMKDS-------- 389
Cdd:pfam12128 690 QLKQLDKKHQAWLEEQKeqkREARTEKQAYWQVVEGALDAqlallkaaiaarrsgakAELKALET--WYKRDlaslgvdp 767
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 390 -KISSMERGLRDLEEEIQMLKSNGAlstEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQtkletltnqf 468
Cdd:pfam12128 768 dVIAKLKREIRTLERKIERIAVRRQ---EVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLI---------- 834
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 469 SDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMlnkktKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVL 548
Cdd:pfam12128 835 ADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATL-----KEDANSEQAQGSIGERLAQLEDLKLKRDYLSESV 909
|
330
....*....|....
gi 27530920 549 QKKIENLQEQLRDK 562
Cdd:pfam12128 910 KKYVEHFKNVIADH 923
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
565-810 |
2.44e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.01 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 565 QMSSL-KERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEK 643
Cdd:PHA02562 167 EMDKLnKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 644 EASLLDLKEHASSLASSGLKKDSRLKTL--EIALEQKKEECLKMESQLKKAHEAALEARAspEMSDRIQHLEREITRYKD 721
Cdd:PHA02562 247 VMDIEDPSAALNKLNTAAAKIKSKIEQFqkVIKMYEKGGVCPTCTQQISEGPDRITKIKD--KLKELQHSLEKLDTAIDE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 722 ESSKAQaEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKhKEQVEKKksaqmlEEARRREDNLNDSSQQLQ 801
Cdd:PHA02562 325 LEEIMD-EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ-AEFVDNA------EELAKLQDELDKIVKTKS 396
|
....*....
gi 27530920 802 DSLRKKDDR 810
Cdd:PHA02562 397 ELVKEKYHR 405
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
346-765 |
2.45e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 2.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 346 LESLLEQKEKENSMLREEMHRrfenapdsaKTKALQTVIEMKDSKISSMErglrDLEEEIQMLKSNgalsTEEREEEMKQ 425
Cdd:TIGR04523 347 LKKELTNSESENSEKQRELEE---------KQNEIEKLKKENQSYKQEIK----NLESQINDLESK----IQNQEKLNQQ 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 426 MEvyrshskfmkNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEE 505
Cdd:TIGR04523 410 KD----------EQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINK 479
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 506 KETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQadttnTDT 585
Cdd:TIGR04523 480 IKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDD-----FEL 554
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 586 ALTTLEEALAEKERTIERLKEQRD---RDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGL 662
Cdd:TIGR04523 555 KKENLEKEIDEKNKEIEELKQTQKslkKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIK 634
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 663 KKDSRLKTLEIALEQKKEECLKMESqlkKAHEAALEARASPEMSDRI------------QHLEREITRYKDESskaqaEV 730
Cdd:TIGR04523 635 NIKSKKNKLKQEVKQIKETIKEIRN---KWPEIIKKIKESKTKIDDIielmkdwlkelsLHYKKYITRMIRIK-----DL 706
|
410 420 430
....*....|....*....|....*....|....*
gi 27530920 731 DRLLEILKEVENEKNDKDKKIAELERQVKDQNKKV 765
Cdd:TIGR04523 707 PKLEEKYKEIEKELKKLDEFSKELENIIKNFNKKF 741
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
542-820 |
2.77e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 2.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 542 ERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEAL--AEKERTIERLKEQRDRDEREKQEei 619
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELERLDASSDD-- 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 620 dnykkdlkdlkekVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEA 699
Cdd:COG4913 687 -------------LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 700 RASPEMSDRI-----QHLEREITRYKDESSKAQAEVDRLL-EILKEVENEKNDKDKKIAELE--RQVKDQNKKVANLKHK 771
Cdd:COG4913 754 RFAAALGDAVerelrENLEERIDALRARLNRAEEELERAMrAFNREWPAETADLDADLESLPeyLALLDRLEEDGLPEYE 833
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 27530920 772 EQVEKKKSAQMleearrrEDNLNDSSQQLQDSLRKKDDRIEELEEALRE 820
Cdd:COG4913 834 ERFKELLNENS-------IEFVADLLSKLRRAIREIKERIDPLNDSLKR 875
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
369-954 |
2.98e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 2.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 369 ENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEvyrshsKFMKNKIGQVKQELS 448
Cdd:pfam12128 238 KIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLD------DQWKEKRDELNGELS 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 449 RKDTELLALQTKLETLTnqfSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQ- 527
Cdd:pfam12128 312 AADAAVAKDRSELEALE---DQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQn 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 528 AGEIHDLKDMLD----VKERKVNVLQKKIENLQEQLRDKEKQ---------------MSSLKERVKSLQADTTNTDTALT 588
Cdd:pfam12128 389 NRDIAGIKDKLAkireARDRQLAVAEDDLQALESELREQLEAgklefneeeyrlksrLGELKLRLNQATATPELLLQLEN 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 589 TLEEALAEKERTIERLKEQRD--RDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSE-------KEASLL--------DLK 651
Cdd:pfam12128 469 FDERIERAREEQEAANAEVERlqSELRQARKRRDQASEALRQASRRLEERQSALDElelqlfpQAGTLLhflrkeapDWE 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 652 EHASSLASSGLKKDSRLKTLEIALEQKKEECL--------KMESQLKKAHEAALEARASP------EMSDRIQHLEREIT 717
Cdd:pfam12128 549 QSIGKVISPELLHRTDLDPEVWDGSVGGELNLygvkldlkRIDVPEWAASEEELRERLDKaeealqSAREKQAAAEEQLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 718 RYKDESSKAQAEVDRLLEILKEVE--------NEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRR 789
Cdd:pfam12128 629 QANGELEKASREETFARTALKNARldlrrlfdEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQ 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 790 EDNLNDSSQQ-LQDSLRKKDDRIEELEEALrESVQITAEREMVLAQEESARTNAEKQVEELLMAmeKVKQELESMKAKLS 868
Cdd:pfam12128 709 KREARTEKQAyWQVVEGALDAQLALLKAAI-AARRSGAKAELKALETWYKRDLASLGVDPDVIA--KLKREIRTLERKIE 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 869 STQQSLAEKethltnlrAERRKHLEEVLEMKQEALlaAISEKDANIALLELSSSKKKTQEEV----AALKREKDRLVQQL 944
Cdd:pfam12128 786 RIAVRRQEV--------LRYFDWYQETWLQRRPRL--ATQLSNIERAISELQQQLARLIADTklrrAKLEMERKASEKQQ 855
|
650
....*....|
gi 27530920 945 KQQTQNRMKL 954
Cdd:pfam12128 856 VRLSENLRGL 865
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
685-918 |
3.16e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 685 MESQLKKAHEAALEARAS-----PEMSDRIQHLEREITRYKDE------SSKAQAEVDRLLEI---LKEVENEKNDKDKK 750
Cdd:COG3206 162 LEQNLELRREEARKALEFleeqlPELRKELEEAEAALEEFRQKnglvdlSEEAKLLLQQLSELesqLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 751 IAELERQVKDQNKKVANLKHKEQVEKKKSAqmLEEARRREDNLndsSQQLQD---SLRKKDDRIEELEEalresvQITAE 827
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPVIQQLRAQ--LAELEAELAEL---SARYTPnhpDVIALRAQIAALRA------QLQQE 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 828 REMVLAQEESARTNAEKQVEELlmamekvKQELESMKAKLsstqQSLAEKETHLTNLRAER---RKHLEEVLEMKQEALL 904
Cdd:COG3206 311 AQRILASLEAELEALQAREASL-------QAQLAQLEARL----AELPELEAELRRLEREVevaRELYESLLQRLEEARL 379
|
250
....*....|....
gi 27530920 905 AAiSEKDANIALLE 918
Cdd:COG3206 380 AE-ALTVGNVRVID 392
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
375-574 |
4.40e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 4.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 375 AKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKIgqvkQELSRKDTEL 454
Cdd:COG4942 48 KEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRAL----YRLGRQPPLA 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 455 LALQTKletltnQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDL 534
Cdd:COG4942 124 LLLSPE------DFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAER 197
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 27530920 535 KDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVK 574
Cdd:COG4942 198 QKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
148-607 |
4.86e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 4.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 148 DNTIMDLQTQLKEVLR---------ENDLLRKDVEVKESKLSSSMNSIKT-FWSPELKKERALRKDEASKITIWKEQYRV 217
Cdd:pfam15921 323 ESTVSQLRSELREAKRmyedkieelEKQLVLANSELTEARTERDQFSQESgNLDDQLQKLLADLHKREKELSLEKEQNKR 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 218 VQEENQHMQMTIQALQDEL--------RIQRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHERQAKELFLLRKTLE 289
Cdd:pfam15921 403 LWDRDTGNSITIDHLRRELddrnmevqRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVE 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 290 EMElrieTQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTR-----------RLAEAEMHVHHLESLLE------- 351
Cdd:pfam15921 483 ELT----AKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRsrvdlklqelqHLKNEGDHLRNVQTECEalklqma 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 352 QKEKENSMLREEMHRRFENAPDSAKTKALQTViemkdsKISSMERGLRDLEEEIQMLKsngaLSTEEREEEMKQMEVYRS 431
Cdd:pfam15921 559 EKDKVIEILRQQIENMTQLVGQHGRTAGAMQV------EKAQLEKEINDRRLELQEFK----ILKDKKDAKIRELEARVS 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 432 HSKFMKNKIGQVKQELSRK----DTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRaaiLQTEVDALRLRLEEKE 507
Cdd:pfam15921 629 DLELEKVKLVNAGSERLRAvkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEE---METTTNKLKMQLKSAQ 705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 508 TMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTAL 587
Cdd:pfam15921 706 SELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEK 785
|
490 500
....*....|....*....|
gi 27530920 588 TTLEEALAEKERTIERLKEQ 607
Cdd:pfam15921 786 NKMAGELEVLRSQERRLKEK 805
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
387-725 |
5.18e-04 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 44.27 E-value: 5.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 387 KDSKISSMERGLRDLEEEIQMLKS--NGAL-----STEEREEEMKQMEvYRSHSKFMKNKIGQVKQELSRKDTELLALQT 459
Cdd:PTZ00108 997 KEYLLGKLERELARLSNKVRFIKHviNGELvitnaKKKDLVKELKKLG-YVRFKDIIKKKSEKITAEEEEGAEEDDEADD 1075
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 460 KLETLTNQ-------------FSDSKQHIEVLKESLTAKEQRAAILQ---------TEVDALRLRLEEKETM-------- 509
Cdd:PTZ00108 1076 EDDEEELGaavsydyllsmpiWSLTKEKVEKLNAELEKKEKELEKLKnttpkdmwlEDLDKFEEALEEQEEVeekeiake 1155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 510 --LNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTAL 587
Cdd:PTZ00108 1156 qrLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKP 1235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 588 TTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEAsllDLKEHASSLASSGLKKD-S 666
Cdd:PTZ00108 1236 KKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPD---GESNGGSKPSSPTKKKVkK 1312
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 27530920 667 RLKTLEIALEQKKEECLK---------MESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSK 725
Cdd:PTZ00108 1313 RLEGSLAALKKKKKSEKKtarkkksktRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDED 1380
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
501-940 |
5.22e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.12 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 501 LRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADT 580
Cdd:PRK01156 169 DKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 581 TNTDTALTTLEEALAEKERTIERLKEQRDRDER----------EKQEEIDNYKKdlkdlkekvslLQGDlsekeasLLDL 650
Cdd:PRK01156 249 DMKNRYESEIKTAESDLSMELEKNNYYKELEERhmkiindpvyKNRNYINDYFK-----------YKND-------IENK 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 651 KEHASSLASSGLKKDSRLKTLEIaLEQKKEECLKMESQLKKAHEAALEARaspEMSDRIQHLEREITRYK----DESSKA 726
Cdd:PRK01156 311 KQILSNIDAEINKYHAIIKKLSV-LQKDYNDYIKKKSRYDDLNNQILELE---GYEMDYNSYLKSIESLKkkieEYSKNI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 727 QAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLkhkeQVEKKKSAQMLEEARRREDNLN------------ 794
Cdd:PRK01156 387 ERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSL----NQRIRALRENLDELSRNMEMLNgqsvcpvcgttl 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 795 --DSSQQLQDSLRKKDDRIEE-LEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSstq 871
Cdd:PRK01156 463 geEKSNHIINHYNEKKSRLEEkIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKIN--- 539
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 27530920 872 qSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEkdanIALLELSSSKKKTQEEVAALKREKDRL 940
Cdd:PRK01156 540 -ELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAV----ISLIDIETNRSRSNEIKKQLNDLESRL 603
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
391-874 |
6.03e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.12 E-value: 6.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 391 ISSMERGLRDLEEEIQMLKSNGA----------LSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTK 460
Cdd:PRK01156 161 INSLERNYDKLKDVIDMLRAEISnidyleeklkSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 461 LETLTNQFSDSKQHIEVLKESltakEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDML-- 538
Cdd:PRK01156 241 LNELSSLEDMKNRYESEIKTA----ESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILsn 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 539 -DVKERKVNVLQKKIENLQ---EQLRDKEKQMSSLKERVKSLQadttntdtaltTLEEALAEKERTIERLKEQRDRDERE 614
Cdd:PRK01156 317 iDAEINKYHAIIKKLSVLQkdyNDYIKKKSRYDDLNNQILELE-----------GYEMDYNSYLKSIESLKKKIEEYSKN 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 615 KQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLE--IALEQKKEECLKMESQLKKA 692
Cdd:PRK01156 386 IERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSrnMEMLNGQSVCPVCGTTLGEE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 693 HEAALEARASPEMS---DRIQHLEREITRYKDESSKAQAEVDRLL-EILKEVENEKNDKDKKIAELERQVKDQNK-KVAN 767
Cdd:PRK01156 466 KSNHIINHYNEKKSrleEKIREIEIEVKDIDEKIVDLKKRKEYLEsEEINKSINEYNKIESARADLEDIKIKINElKDKH 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 768 LKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVE 847
Cdd:PRK01156 546 DKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIE 625
|
490 500
....*....|....*....|....*..
gi 27530920 848 ELLMAMEKVKQELESMKAKLSSTQQSL 874
Cdd:PRK01156 626 NEANNLNNKYNEIQENKILIEKLRGKI 652
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
675-956 |
6.05e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 6.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 675 LEQKKEECLK-MESQLK-----KAHEAALEARAS--PEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVE----- 741
Cdd:pfam17380 301 LRQEKEEKAReVERRRKleeaeKARQAEMDRQAAiyAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISrmrel 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 742 -------NEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREdnlndsSQQLQDSLRKKDDRIEEL 814
Cdd:pfam17380 381 erlqmerQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQRE------VRRLEEERAREMERVRLE 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 815 EEALRESVQITAEREmvlAQEESARTNAEKQVEELLMAMEKVKQELESmkaKLSSTQQSLAEKEthltnlraERRKHLEE 894
Cdd:pfam17380 455 EQERQQQVERLRQQE---EERKRKKLELEKEKRDRKRAEEQRRKILEK---ELEERKQAMIEEE--------RKRKLLEK 520
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 27530920 895 VLEMKQEALLAAISEKDAniallelsSSKKKTQEEVaalkREKDRLVQQLKQQTQNRMKLMA 956
Cdd:pfam17380 521 EMEERQKAIYEEERRREA--------EEERRKQQEM----EERRRIQEQMRKATEERSRLEA 570
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
790-960 |
6.25e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 6.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 790 EDNLNDSSQQLQDSLRKKDDRIEELEEALREsvqitAEREMVLAQEESARTNAEKQVEELLmamekvkQELESMKAKLSS 869
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEE-----AEAALEEFRQKNGLVDLSEEAKLLL-------QQLSELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 870 TQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEK--DANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQ 947
Cdd:COG3206 231 ARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQlaELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQE 310
|
170
....*....|...
gi 27530920 948 TQNRMKLMADNYE 960
Cdd:COG3206 311 AQRILASLEAELE 323
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
536-781 |
6.81e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 6.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 536 DMLDVKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDERek 615
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 616 qeeiDNYKKDLKDLKEKVSLLQGDLSEkeasLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEA 695
Cdd:COG3883 94 ----ALYRSGGSVSYLDVLLGSESFSD----FLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 696 ALEARASpemsdriqhLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVE 775
Cdd:COG3883 166 LEAAKAE---------LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA 236
|
....*.
gi 27530920 776 KKKSAQ 781
Cdd:COG3883 237 AAAAAA 242
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
209-421 |
6.86e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.46 E-value: 6.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 209 TIWKEQYRVVQEENQHMQMTIQALQDELRIQRDlnqlFQQDSSSRTGEPcVAELTE------ENFQRLHAEHERQAKELF 282
Cdd:PHA02562 170 KLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNK----NIEEQRKKNGEN-IARKQNkydelvEEAKTIKAEIEELTDELL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 283 LLRKTLEEME---LRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENSM 359
Cdd:PHA02562 245 NLVMDIEDPSaalNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDE 324
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 27530920 360 LREEMHRRFENapdSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREE 421
Cdd:PHA02562 325 LEEIMDEFNEQ---SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAK 383
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
708-852 |
6.91e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 6.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 708 RIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQ--NKKVANLKHKEQVEKKKSAQMLEE 785
Cdd:COG1579 32 ELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVrnNKEYEALQKEIESLKRRISDLEDE 111
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 27530920 786 ARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMA 852
Cdd:COG1579 112 ILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPELLA 178
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
550-946 |
7.77e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 7.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 550 KKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTAlttlEEALAEKERTIERLKEQRDRDEREKQeeidnykkdLKDL 629
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEEL----EEELEELEAELEELREELEKLEKLLQ---------LLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 630 KEKVSLLQGDLSEKEASLLDLKEHASSLASsglkKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEaraspEMSDRI 709
Cdd:COG4717 131 YQELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATEEELQ-----DLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 710 QHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKD--KKIAELERQV----------------------------- 758
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAleERLKEARLLLliaaallallglggsllsliltiagvlfl 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 759 ----------KDQNKKVANLKHKEQVEKKKSAQMLEEARRRE--DNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITA 826
Cdd:COG4717 282 vlgllallflLLAREKASLGKEAEELQALPALEELEEEELEEllAALGLPPDLSPEELLELLDRIEELQELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 827 EREMVLAQEESARTNAEKQVEELLMAMEKVKQelesmkaklsstQQSLAEKETHLTNLRAERRKHLEEVlemkqEALLAA 906
Cdd:COG4717 362 ELQLEELEQEIAALLAEAGVEDEEELRAALEQ------------AEEYQELKEELEELEEQLEELLGEL-----EELLEA 424
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 27530920 907 ISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQ 946
Cdd:COG4717 425 LDEEELEEELEELEEELEELEEELEELREELAELEAELEQ 464
|
|
| PspC_subgroup_1 |
NF033838 |
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ... |
531-949 |
9.50e-04 |
|
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.
Pssm-ID: 468201 [Multi-domain] Cd Length: 684 Bit Score: 43.08 E-value: 9.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 531 IHDLKDMLDVKERKVNV-LQKKIENLQ-EQLRD----KEKQMSSLKERVKS-LQADTTNTDTALTTLEEALAEKERTIEr 603
Cdd:NF033838 71 LSEIQKSLDKRKHTQNVaLNKKLSDIKtEYLYElnvlKEKSEAELTSKTKKeLDAAFEQFKKDTLEPGKKVAEATKKVE- 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 604 lkEQRDRDEREKQEEIDNYKKDLKDLKEkVSLLQGDLSEKEASLLDLKEHASslassGLKKDSRLKTLEIALEQKKEECL 683
Cdd:NF033838 150 --EAEKKAKDQKEEDRRNYPTNTYKTLE-LEIAESDVEVKKAELELVKEEAK-----EPRDEEKIKQAKAKVESKKAEAT 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 684 KMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDES-SKAQAEVDRLLEILKEVENEKNDKDKKIAE--LERQVKD 760
Cdd:NF033838 222 RLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPkRRAKRGVLGEPATPDKKENDAKSSDSSVGEetLPSPSLK 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 761 QNKKVANLKHKEQVEKKKSAQMLEEARRREDNlndssqqlqdslrkkdDRIEELEEALRESVQITAEREMVLAQEESART 840
Cdd:NF033838 302 PEKKVAEAEKKVEEAKKKAKDQKEEDRRNYPT----------------NTYKTLELEIAESDVKVKEAELELVKEEAKEP 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 841 NAEKQVeellmamEKVKQELESMKA---KLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEA------LLAAISEKD 911
Cdd:NF033838 366 RNEEKI-------KQAKAKVESKKAeatRLEKIKTDRKKAEEEAKRKAAEEDKVKEKPAEQPQPApapqpeKPAPKPEKP 438
|
410 420 430
....*....|....*....|....*....|....*...
gi 27530920 912 ANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQ 949
Cdd:NF033838 439 AEQPKAEKPADQQAEEDYARRSEEEYNRLTQQQPPKTE 476
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
335-938 |
1.28e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.85 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 335 RLAEAEMHVHHLESLLEQKEKENSMLREEMHRRFE--------NAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQ 406
Cdd:pfam01576 20 RQQKAESELKELEKKHQQLCEEKNALQEQLQAETElcaeaeemRARLAARKQELEEILHELESRLEEEEERSQQLQNEKK 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 407 MLKSNGALSTEEREEEMK-----QMEVYRSHSKFMKnkigqvkqelsrKDTELLALQTKLETLTNQFSDSKQHIEVLKES 481
Cdd:pfam01576 100 KMQQHIQDLEEQLDEEEAarqklQLEKVTTEAKIKK------------LEEDILLLEDQNSKLSKERKLLEERISEFTSN 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 482 LTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDmldvkerKVNVLQKKIENLQEQLRD 561
Cdd:pfam01576 168 LAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQE-------QIAELQAQIAELRAQLAK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 562 KEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQ---EEIDNYKKDLKDLKEKVSLLQG 638
Cdd:pfam01576 241 KEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRdlgEELEALKTELEDTLDTTAAQQE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 639 DLSEKEASLLDLKE--------HASSLASSGLKKDSRLKTLEIALEQKK--------------EECLKMESQLKKAHEAA 696
Cdd:pfam01576 321 LRSKREQEVTELKKaleeetrsHEAQLQEMRQKHTQALEELTEQLEQAKrnkanlekakqaleSENAELQAELRTLQQAK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 697 LEARAS--------PEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQN------ 762
Cdd:pfam01576 401 QDSEHKrkklegqlQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQellqee 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 763 --KKVANLKHKEQVEKKKSAQM-----LEEARRR-EDNLNDSSQQLQDSLRKKDDR---IEELEEA-------LRESVQI 824
Cdd:pfam01576 481 trQKLNLSTRLRQLEDERNSLQeqleeEEEAKRNvERQLSTLQAQLSDMKKKLEEDagtLEALEEGkkrlqreLEALTQQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 825 TAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMKQEALL 904
Cdd:pfam01576 561 LEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALS 640
|
650 660 670
....*....|....*....|....*....|....
gi 27530920 905 AAISEKDANIALLELSSSKKKTQEEVAALKREKD 938
Cdd:pfam01576 641 LARALEEALEAKEELERTNKQLRAEMEDLVSSKD 674
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
551-816 |
1.45e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 42.73 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 551 KIENLQEQLRDKEKQMSSLKER-VKSLQADTTNTDTALTTLEEALAEKER-TIERLKEQRDRDEREKQEEIDNYKKDLKD 628
Cdd:PTZ00108 1103 KVEKLNAELEKKEKELEKLKNTtPKDMWLEDLDKFEEALEEQEEVEEKEIaKEQRLKSKTKGKASKLRKPKLKKKEKKKK 1182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 629 LKEKVSlLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMSDR 708
Cdd:PTZ00108 1183 KSSADK-SKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFS 1261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 709 IQHLEREITRyKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQN------KKVANLKHKEQVEKKKSAQM 782
Cdd:PTZ00108 1262 SDDLSKEGKP-KNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLegslaaLKKKKKSEKKTARKKKSKTR 1340
|
250 260 270
....*....|....*....|....*....|....
gi 27530920 783 LEEARRrednlNDSSQQLQDSLRKKDDRIEELEE 816
Cdd:PTZ00108 1341 VKQASA-----SQSSRLLRRPRKKKSDSSSEDDD 1369
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
504-622 |
1.59e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 504 EEKETMLNKKTKQIQDMAEEKGTQAG-EIHDLKDMLdvkERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTN 582
Cdd:PRK12704 38 EEAKRILEEAKKEAEAIKKEALLEAKeEIHKLRNEF---EKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEK 114
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 27530920 583 TDTALTTLEEALAEKERTIERLKEQrdrdEREKQEEIDNY 622
Cdd:PRK12704 115 KEKELEQKQQELEKKEEELEELIEE----QLQELERISGL 150
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
192-806 |
1.90e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.26 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 192 PELKKERALRKDEASKITIWKEQYRVVQEENQHMQMTIQALQDELRIQRDLNQLFQQdsssrtgepcvaelteENFQRLH 271
Cdd:TIGR00618 297 AHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQ----------------EIHIRDA 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 272 AEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKglsaKATEEDHERTRRLAEAEMHVHHLESLLE 351
Cdd:TIGR00618 361 HEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQRE----QATIDTRTSAFRDLQGQLAHAKKQQELQ 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 352 QKEKENSMLREEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRdlEEEIQMLKSNGALSTEEREEEMKQMEVYRS 431
Cdd:TIGR00618 437 QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQ--ETRKKAVVLARLLELQEEPCPLCGSCIHPN 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 432 HSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLN 511
Cdd:TIGR00618 515 PARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITV 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 512 KKTKQIQDMAEEKGTQAGEIHDLKDMldvkerkvnvLQKKIENLQEQLRDKEKQMSslkERVKSLQADTTNTDTALTTLE 591
Cdd:TIGR00618 595 RLQDLTEKLSEAEDMLACEQHALLRK----------LQPEQDLQDVRLHLQQCSQE---LALKLTALHALQLTLTQERVR 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 592 EALAEKERTIERLKEQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTL 671
Cdd:TIGR00618 662 EHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDAL 741
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 672 EIALEQKKEECLKMESQLKKAHEAALEARASPEMS-DRIQHLEREITRYKDESSKAQAEVDRLL----EILKEVENEKND 746
Cdd:TIGR00618 742 NQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTgAELSHLAAEIQFFNRLREEDTHLLKTLEaeigQEIPSDEDILNL 821
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 747 KDKKIAELERQVKDQNKKvanlKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRK 806
Cdd:TIGR00618 822 QCETLVQEEEQFLSRLEE----KSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDK 877
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
392-604 |
2.28e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.80 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 392 SSMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDS 471
Cdd:pfam07888 34 NRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEEL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 472 KQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNVLQKK 551
Cdd:pfam07888 114 SEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKE 193
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 27530920 552 IENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERL 604
Cdd:pfam07888 194 FQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERL 246
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
311-951 |
3.07e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 311 KLLEMLQSKGLSAKATEEDHERTRRLAE--AEMHVHHLESLLEQKEKENSmlREEMHRRFENAPDSAKTKalQTVIEMKD 388
Cdd:TIGR00606 186 KALETLRQVRQTQGQKVQEHQMELKYLKqyKEKACEIRDQITSKEAQLES--SREIVKSYENELDPLKNR--LKEIEHNL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 389 SKISSMERGLRDLEE-EIQMLKSNGALsteereeEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQ 467
Cdd:TIGR00606 262 SKIMKLDNEIKALKSrKKQMEKDNSEL-------ELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 468 FSDSKQhievlKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDVKERKVNV 547
Cdd:TIGR00606 335 RRLLNQ-----EKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKT 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 548 LQKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEIDNYKK-DL 626
Cdd:TIGR00606 410 AAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERElSK 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 627 KDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMES--QLKKAHEAALEARA--- 701
Cdd:TIGR00606 490 AEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQirKIKSRHSDELTSLLgyf 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 702 --SPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDqnkkvANLKHKEQVEKKKS 779
Cdd:TIGR00606 570 pnKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFD-----VCGSQDEESDLERL 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 780 AQMLEEARRREDNLNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQE 859
Cdd:TIGR00606 645 KEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKR 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 860 LESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEMK-----QEALLAAI--SEKDANIAL----------LELSSS 922
Cdd:TIGR00606 725 RDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKndieeQETLLGTImpEEESAKVCLtdvtimerfqMELKDV 804
|
650 660 670
....*....|....*....|....*....|
gi 27530920 923 KKKTQEEVAALKR-EKDRLVQQLKQQTQNR 951
Cdd:TIGR00606 805 ERKIAQQAAKLQGsDLDRTVQQVNQEKQEK 834
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
276-888 |
3.11e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.70 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 276 RQAKELFLLRKTLEEMELRIETQKQTLNAR-DESIKKLLEMLQ-----------SKGLSAKATEEDHERTRRLAEAEMHV 343
Cdd:pfam01576 324 KREQEVTELKKALEEETRSHEAQLQEMRQKhTQALEELTEQLEqakrnkanlekAKQALESENAELQAELRTLQQAKQDS 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 344 HHLESLLEQKEKENSMLREEMHRRFENAPDsaKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSTEEREEEM 423
Cdd:pfam01576 404 EHKRKKLEGQLQELQARLSESERQRAELAE--KLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEET 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 424 KQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRL 503
Cdd:pfam01576 482 RQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQL 561
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 504 EEKE-------------------------------TMLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDV----KERKVNVL 548
Cdd:pfam01576 562 EEKAaaydklektknrlqqelddllvdldhqrqlvSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAeareKETRALSL 641
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 549 QKKIENLQEQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQRDRDEREKQEEID-------- 620
Cdd:pfam01576 642 ARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDaklrlevn 721
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 621 ----------NYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALE---QKKEECL---- 683
Cdd:pfam01576 722 mqalkaqferDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDaanKGREEAVkqlk 801
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 684 KMESQLKKAHEAALEARASpemSDRIQHLEREITRykdESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKDQNK 763
Cdd:pfam01576 802 KLQAQMKDLQRELEEARAS---RDEILAQSKESEK---KLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGAS 875
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 764 KVANLKHKEQVEKKKSAQMLEEARRREDNlndsSQQLQDSLRKKDDRIEELeealreSVQITAEREMvLAQEESARTNAE 843
Cdd:pfam01576 876 GKSALQDEKRRLEARIAQLEEELEEEQSN----TELLNDRLRKSTLQVEQL------TTELAAERST-SQKSESARQQLE 944
|
650 660 670 680
....*....|....*....|....*....|....*....|....*.
gi 27530920 844 KQVEELLMAMEKVKQELES-MKAKLSSTQQSLAEKETHLTNLRAER 888
Cdd:pfam01576 945 RQNKELKAKLQEMEGTVKSkFKSSIAALEAKIAQLEEQLEQESRER 990
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
277-528 |
3.38e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 277 QAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQskglsaKATEEDHERTRRLAEAEMHVHHLESLLEQKEKE 356
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA------ALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 357 NSMLREEMHRRFENapdsaktkalqtviemkdskissMERGLRDLEEEIQMLKSNGALSTEEREEEMKQMEVYRSHSKFM 436
Cdd:COG4942 92 IAELRAELEAQKEE-----------------------LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 437 KNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQ 516
Cdd:COG4942 149 REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|..
gi 27530920 517 IQDMAEEKGTQA 528
Cdd:COG4942 229 IARLEAEAAAAA 240
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
731-912 |
3.48e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 41.14 E-value: 3.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 731 DRLLEILKEvENEKN-DKDKKIAEL-ERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLN---DSSQQLQDSLR 805
Cdd:pfam05262 180 KKVVEALRE-DNEKGvNFRRDMTDLkERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADkqrDEVRQKQQEAK 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 806 KKDDRIEELEEALRESVQITAEREMVLAQEEsartnAEKQVEELLMAMEKVKQELesmkAKLSSTQQSLAEKEThltnlr 885
Cdd:pfam05262 259 NLPKPADTSSPKEDKQVAENQKREIEKAQIE-----IKKNDEEALKAKDHKAFDL----KQESKASEKEAEDKE------ 323
|
170 180
....*....|....*....|....*..
gi 27530920 886 AERRKHLEEVLEMKQEALLAAISEKDA 912
Cdd:pfam05262 324 LEAQKKREPVAEDLQKTKPQVEAQPTS 350
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
775-947 |
3.89e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 775 EKKKSAQMLEEARRREDNLNDSSQQLQDsLRKKDDRIEELEEaLRESVQITAEREMVLAQEESART--NAEKQVEELLMA 852
Cdd:COG4913 219 EEPDTFEAADALVEHFDDLERAHEALED-AREQIELLEPIRE-LAERYAAARERLAELEYLRAALRlwFAQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 853 MEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKH---LEEVLEMKQEALLAAISEKDANIALLE-----LSSSKK 924
Cdd:COG4913 297 LEELRAELARLEAELERLEARLDALREELDELEAQIRGNggdRLEQLEREIERLERELEERERRRARLEallaaLGLPLP 376
|
170 180
....*....|....*....|...
gi 27530920 925 KTQEEVAALKREKDRLVQQLKQQ 947
Cdd:COG4913 377 ASAEEFAALRAEAAALLEALEEE 399
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
421-1058 |
4.28e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.11 E-value: 4.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 421 EEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDALR 500
Cdd:TIGR00618 170 MNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKR 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 501 LRLEEKETmLNKKTKQIQDMAEEKGTQAGEIHDLKDMLDvKERKVNVLQKKIENLQEQLRDKEKQMSSLKERVKSLqADT 580
Cdd:TIGR00618 250 EAQEEQLK-KQQLLKQLRARIEELRAQEAVLEETQERIN-RARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSR-AKL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 581 TNTDTALTTLEEALAEKERTIERLKEQRDRDEREkqeeidnykkdlkdlkekvsllqgdlSEKEASLLDLKEHASSLASS 660
Cdd:TIGR00618 327 LMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDA--------------------------HEVATSIREISCQQHTLTQH 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 661 GLKKDsrlKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAEVDRLLEILKEV 740
Cdd:TIGR00618 381 IHTLQ---QQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLE 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 741 ENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQQLQDSLRKKDDRiEELEEALRE 820
Cdd:TIGR00618 458 KIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLT-RRMQRGEQT 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 821 SVQITAEREMVLAQEESARtnaeKQVEELLMAMEKVKQELEsmkaKLSSTQQSLAEKETHLTNLRAERRKHLEEVLE--- 897
Cdd:TIGR00618 537 YAQLETSEEDVYHQLTSER----KQRASLKEQMQEIQQSFS----ILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEaed 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 898 MKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYEDDHFKSSHSNQTNHKPS 977
Cdd:TIGR00618 609 MLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSE 688
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 978 PDQIIQPLLELDQNRSKLKLYIGHLTTLCHDRDPLILRGLTPPASYNLDDDQAAW-ENELQKMTRGQLQDELEKGERDNA 1056
Cdd:TIGR00618 689 KEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQsLKELMHQARTVLKARTEAHFNNNE 768
|
..
gi 27530920 1057 EL 1058
Cdd:TIGR00618 769 EV 770
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
335-836 |
5.04e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.88 E-value: 5.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 335 RLAEAEMHVHHLESLLEQKEKENSMLREEMHRRFENAPD-----SAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLK 409
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRqldreSDRNQELQKRIRLLEKREAEAEEALREQAELNRLKK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 410 SNGALSTEEREEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKLEtltnqfsDSKQHIEVLKESLTAKEQRA 489
Cdd:pfam05557 83 KYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELE-------ELQERLDLLKAKASEAEQLR 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 490 AILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAgEIHDLKDMldvkERKVNVLQKKIENLQEQLRDKEkqmsSL 569
Cdd:pfam05557 156 QNLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKS-ELARIPEL----EKELERLREHNKHLNENIENKL----LL 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 570 KERVKSLQADTTNTDTALTTLEEALAEKERTIERLKEQrdrdEREKQEEIDNYKKDLKDLKEKVSLLQGDLSekeaslld 649
Cdd:pfam05557 227 KEEVEDLKRKLEREEKYREEAATLELEKEKLEQELQSW----VKLAQDTGLNLRSPEDLSRRIEQLQQREIV-------- 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 650 LKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMSDRIQHLEREITRYKDESSKAQAE 729
Cdd:pfam05557 295 LKEENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNY 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 730 VDRLLEILKEVENEKNDKDKKIAELERQVKDQNKKVANLKHKeqvekkksAQMLE---EARRREDNLNDSSQQLQ--DSL 804
Cdd:pfam05557 375 SPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQ--------AQTLErelQALRQQESLADPSYSKEevDSL 446
|
490 500 510
....*....|....*....|....*....|..
gi 27530920 805 RKKDDRIEELEEALRESVQitaEREMVLAQEE 836
Cdd:pfam05557 447 RRKLETLELERQRLREQKN---ELEMELERRC 475
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
260-864 |
5.34e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 40.89 E-value: 5.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 260 AELTEENFQRLhaehERQAKELFLLRKTLEEMELRIETQKQTLNARdesikkllemlqskGLSAKATEEDHERTRR-LAE 338
Cdd:pfam07111 65 AELISRQLQEL----RRLEEEVRLLRETSLQQKMRLEAQAMELDAL--------------AVAEKAGQAEAEGLRAaLAG 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 339 AEMHVHHLESLLEQKEKENSMLREEMHrrfenapdSAKTKALQTVIEMKDSKISSMERGLRDLEEEiqmlksngalstee 418
Cdd:pfam07111 127 AEMVRKNLEEGSQRELEEIQRLHQEQL--------SSLTQAHEEALSSLTSKAEGLEKSLNSLETK-------------- 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 419 REEEMKQMEVYRSHSKFMKNKIGQVKQELSRKDTELLALQTKL-ETLTNQFSDSKQHIE--VLKESLTAKEQRAAILQTE 495
Cdd:pfam07111 185 RAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLRKYVgEQVPPEVHSQTWELErqELLDTMQHLQEDRADLQAT 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 496 VDALRLRLEEKETMLNKKTKQIQDMAEEKGTQAGEI-HDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQmssLKERVK 574
Cdd:pfam07111 265 VELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFpKKCRSLLNRWREKVFALMVQLKAQDLEHRDSVKQ---LRGQVA 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 575 SLQADTTNTDTALTTLEEALAEK--ERTIERLK--------EQRDRDEREKQEEIDNYKKDLKDLKEKVSLLQGDLSEKE 644
Cdd:pfam07111 342 ELQEQVTSQSQEQAILQRALQDKaaEVEVERMSakglqmelSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTM 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 645 ASLLDLKEHASSLA---SSGLKKDSRLKTL---EIALEQkkeecLKMESQLKKAHEAALEARASPEMSDRIQHLEREITR 718
Cdd:pfam07111 422 TRVEQAVARIPSLSnrlSYAVRKVHTIKGLmarKVALAQ-----LRQESCPPPPPAPPVDADLSLELEQLREERNRLDAE 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 719 YKDESSKAQAEVDRLLEilkEVENEKNDKDKKIAELERQVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDNLNDSSQ 798
Cdd:pfam07111 497 LQLSAHLIQQEVGRARE---QGEAERQQLSEVAQQLEQELQRAQESLASVGQQLEVARQGQQESTEEAASLRQELTQQQE 573
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 27530920 799 QLQDSLRKKddrIEELEEALRESVQITAEREMVLAQEESARTNAEKQVEELLMAMEKVKQELESMK 864
Cdd:pfam07111 574 IYGQALQEK---VAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQ 636
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
704-910 |
6.21e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 6.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 704 EMSDRIQHLEREITRYK-DESSKAQAEVDRLLEILKEVENEKNDKDKKIAELERQVKD-QNKKVANLKHKEQVEKKKSAQ 781
Cdd:PRK05771 54 KLSEALDKLRSYLPKLNpLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISElENEIKELEQEIERLEPWGNFD 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 782 MLEEARRREDNL-----NDSSQQLQDSLRKKDDRIEELEEALRESV----------QITAEREMVLAQEESARTNAEKQV 846
Cdd:PRK05771 134 LDLSLLLGFKYVsvfvgTVPEDKLEELKLESDVENVEYISTDKGYVyvvvvvlkelSDEVEEELKKLGFERLELEEEGTP 213
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 27530920 847 EELLmamEKVKQELESMKAKLSSTQQSLAEKETHLTNLRAERRKHLEEVLEmKQEALL-AAISEK 910
Cdd:PRK05771 214 SELI---REIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELE-RAEALSkFLKTDK 274
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
635-957 |
6.27e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.26 E-value: 6.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 635 LLQGDLSEKEASLLDLKEHASSLASSGLKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEARASPEMSDR-IQHLE 713
Cdd:pfam07888 31 LLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKeLSASS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 714 REITRYKDESSKAQAE-VDRLLEILKEVENEKNDKDKKIAELERqVKDQNKKVANLKHKEQVEKKKSAQMLEEARRREDN 792
Cdd:pfam07888 111 EELSEEKDALLAQRAAhEARIRELEEDIKTLTQRVLERETELER-MKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRS 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 793 LNDSSQQLQDSLRKKDDRIEELEEALRESVQITAEREMVLAQeesartnaekqveellmaMEKVKQELESMKAKLSSTQQ 872
Cdd:pfam07888 190 LSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAE------------------NEALLEELRSLQERLNASER 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 873 SLAEKETHLTNLRAERRKHLEEVLEMKQEALLAAISEKDANIALLE-----------LSSSKKKTQEEVAALKREKDRLV 941
Cdd:pfam07888 252 KVEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREgrarwaqeretLQQSAEADKDRIEKLSAELQRLE 331
|
330
....*....|....*.
gi 27530920 942 QQLKQQTQNRMKLMAD 957
Cdd:pfam07888 332 ERLQEERMEREKLEVE 347
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
546-767 |
6.76e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.15 E-value: 6.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 546 NVLQKKIENLQEQ----LRDKEKQMSSLKErvkslqadttntdtalttleEALAEKERTIERLKEQRDRDEREKQEEIDN 621
Cdd:PRK12704 27 KIAEAKIKEAEEEakriLEEAKKEAEAIKK--------------------EALLEAKEEIHKLRNEFEKELRERRNELQK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27530920 622 ykkdlkdlkekvslLQGDLSEKEASlldLKEHASSLAssglKKDSRLKTLEIALEQKKEECLKMESQLKKAHEAALEAra 701
Cdd:PRK12704 87 --------------LEKRLLQKEEN---LDRKLELLE----KREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE-- 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 27530920 702 spemsdriqhLEReITRYKDESSKAQaevdrlleILKEVENE-KNDKDKKIAELERQVKDQNKKVAN 767
Cdd:PRK12704 144 ----------LER-ISGLTAEEAKEI--------LLEKVEEEaRHEAAVLIKEIEEEAKEEADKKAK 191
|
|
| PRK08475 |
PRK08475 |
F0F1 ATP synthase subunit B; Validated |
890-961 |
6.83e-03 |
|
F0F1 ATP synthase subunit B; Validated
Pssm-ID: 236272 [Multi-domain] Cd Length: 167 Bit Score: 38.46 E-value: 6.83e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 27530920 890 KHLEEVlemkQEALLAAISEKDAniALLELSSSKKKTQEEVAALKREKDRLVQQLKQQTQNRMKLMADNYED 961
Cdd:PRK08475 60 KRLEEI----QEKLKESKEKKED--ALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEE 125
|
|
| |
