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Conserved domains on  [gi|26453062|dbj|BAC43607|]
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unknown protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Transposase_24 super family cl03830
Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA ...
 196-276 1.18e-04

Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA transposition. This family includes various plant transposases from the Ptta and En/Spm families.


The actual alignment was detected with superfamily member pfam03004:

Pssm-ID: 367291 [Multi-domain]  Cd Length: 137  Bit Score: 41.66  E-value: 1.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26453062   196 EEIGELLDMDTSMEETNKiNSDETFVDQKAELVVEKSKVLEDERLTQMFQGDHQYLT-QDEKDDIYKEEVQIKKDKR-FA 273
Cdd:pfam03004  51 EEKGRTPTRAEVFIETHT-KKDGTYVDKKAEEIVDQVQELLQERLSESESETSSVSDgSSDKDEIFLQVVGKDKKGRvYG 129


                  ...
gi 26453062   274 YGS 276
Cdd:pfam03004 130 LGS 132
Vta1 super family cl24167
Vta1 like; Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ...
 65-132 4.70e-04

Vta1 like; Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region.


The actual alignment was detected with superfamily member pfam04652:

Pssm-ID: 461380  Cd Length: 133  Bit Score: 39.86  E-value: 4.70e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 26453062    65 RVANLVESDDPRVAYLCRFYTFEEAHRIDSRSNGRGVRQFKNSLLRRLEKDdeftirrRKEINDHKEL 132
Cdd:pfam04652   1 KRAQELEKADPVVAYYCRLYAVQQILKLGLHKKDKEVRAFLTKLLDKLEQF-------KKELGDNEAI 61
 
Name Accession Description Interval E-value
Transposase_24 pfam03004
Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA ...
 196-276 1.18e-04

Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA transposition. This family includes various plant transposases from the Ptta and En/Spm families.


Pssm-ID: 367291 [Multi-domain]  Cd Length: 137  Bit Score: 41.66  E-value: 1.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26453062   196 EEIGELLDMDTSMEETNKiNSDETFVDQKAELVVEKSKVLEDERLTQMFQGDHQYLT-QDEKDDIYKEEVQIKKDKR-FA 273
Cdd:pfam03004  51 EEKGRTPTRAEVFIETHT-KKDGTYVDKKAEEIVDQVQELLQERLSESESETSSVSDgSSDKDEIFLQVVGKDKKGRvYG 129


                  ...
gi 26453062   274 YGS 276
Cdd:pfam03004 130 LGS 132
Vta1 pfam04652
Vta1 like; Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ...
 65-132 4.70e-04

Vta1 like; Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region.


Pssm-ID: 461380  Cd Length: 133  Bit Score: 39.86  E-value: 4.70e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 26453062    65 RVANLVESDDPRVAYLCRFYTFEEAHRIDSRSNGRGVRQFKNSLLRRLEKDdeftirrRKEINDHKEL 132
Cdd:pfam04652   1 KRAQELEKADPVVAYYCRLYAVQQILKLGLHKKDKEVRAFLTKLLDKLEQF-------KKELGDNEAI 61
 
Name Accession Description Interval E-value
Transposase_24 pfam03004
Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA ...
 196-276 1.18e-04

Plant transposase (Ptta/En/Spm family); Transposase proteins are necessary for efficient DNA transposition. This family includes various plant transposases from the Ptta and En/Spm families.


Pssm-ID: 367291 [Multi-domain]  Cd Length: 137  Bit Score: 41.66  E-value: 1.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26453062   196 EEIGELLDMDTSMEETNKiNSDETFVDQKAELVVEKSKVLEDERLTQMFQGDHQYLT-QDEKDDIYKEEVQIKKDKR-FA 273
Cdd:pfam03004  51 EEKGRTPTRAEVFIETHT-KKDGTYVDKKAEEIVDQVQELLQERLSESESETSSVSDgSSDKDEIFLQVVGKDKKGRvYG 129


                  ...
gi 26453062   274 YGS 276
Cdd:pfam03004 130 LGS 132
Vta1 pfam04652
Vta1 like; Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ...
 65-132 4.70e-04

Vta1 like; Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region.


Pssm-ID: 461380  Cd Length: 133  Bit Score: 39.86  E-value: 4.70e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 26453062    65 RVANLVESDDPRVAYLCRFYTFEEAHRIDSRSNGRGVRQFKNSLLRRLEKDdeftirrRKEINDHKEL 132
Cdd:pfam04652   1 KRAQELEKADPVVAYYCRLYAVQQILKLGLHKKDKEVRAFLTKLLDKLEQF-------KKELGDNEAI 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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