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Conserved domains on  [gi|26324762|dbj|BAC26135|]
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unnamed protein product [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AMOP pfam03782
AMOP domain; This domain may have a role in cell adhesion. It is called the AMOP domain after ...
 286-426 5.25e-78

AMOP domain; This domain may have a role in cell adhesion. It is called the AMOP domain after Adhesion associated domain in MUC4 and Other Proteins. This domain is extracellular and contains a number of cysteines that probably form disulphide bridges.


:

Pssm-ID: 461048  Cd Length: 143  Bit Score: 248.04  E-value: 5.25e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26324762   286 ARAQCLAWEALEDQLPNFLTELPDCPCTLAQARADSGRFFTDYGCDIEHGSV--CTYHPGAVHCVRSVQACPrYGSGQQC 363
Cdd:pfam03782   1 AHDMCDNWYNCDRFLKNFLAELPSCPCTLPQALLDKGRFMPDPRCDLDWNPKetCTYHPGAVHCVRSGLPSF-SGSGQQC 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 26324762   364 CYTAAGTQLLTSDSTSGSTPDRGHDWGAPPYRTPPRVPGMSHWLYDVISFYYCCLWAPE-CPRY 426
Cdd:pfam03782  80 CYDDDGYLMLTYDSFWGSTPDRGHDWGAPPYRSPPFVPGLSHWLHDVMPFYYCCLWADEdCERY 143
VWD super family cl47498
von Willebrand factor type D domain; Swiss:P17554 contains a vwd domain. Its function is ...
 445-610 9.45e-18

von Willebrand factor type D domain; Swiss:P17554 contains a vwd domain. Its function is unrelated but the similarity is very strong by several methods.


The actual alignment was detected with superfamily member pfam00094:

Pssm-ID: 459671 [Multi-domain]  Cd Length: 154  Bit Score: 80.88  E-value: 9.45e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26324762   445 SAFGDPHFVTFDGTSFSFSGNGEYVLLETT--LSDLRVQGraqpGRMPNGTQARGTGLTAVAVQEDNsdvIEVRLaggSR 522
Cdd:pfam00094   2 SVSGDPHYVTFDGVKYTFPGTCTYVLAKDCseEPDFSFSV----TNKNCNGGASGVCLKSVTVIVGD---LEITL---QK 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26324762   523 VLEVLLNQKV--LSFTEQnwmdlkGMFLSVAAQDKVSIMLSSgaGLEVGVQG-PFLSVSILLPEKFLTHTRGLLGTLNNN 599
Cdd:pfam00094  72 GGTVLVNGQKvsLPYKSD------GGEVEILGSGFVVVDLSP--GVGLQVDGdGRGQLFVTLSPSYQGKTCGLCGNYNGN 143

                         170
                  ....*....|.
gi 26324762   600 PRDDFTLRNGQ 610
Cdd:pfam00094 144 QEDDFMTPDGT 154
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 722-776 2.33e-16

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


:

Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 73.65  E-value: 2.33e-16
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 26324762 722 CGWLPPPANGHKEGL--RYLEGSVVRFSCNNGYSLVGPESSTCQADGKWSMPTPECQ 776
Cdd:cd00033   1 CPPPPVPENGTVTGSkgSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
Somatomedin_B pfam01033
Somatomedin B domain;
27-62 1.18e-05

Somatomedin B domain;


:

Pssm-ID: 460034  Cd Length: 40  Bit Score: 42.68  E-value: 1.18e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 26324762    27 GSCSLRCGAQ---DGLCSCHPTCSGLGTCCEDFLDYCLE 62
Cdd:pfam01033   1 ESCKGRCGESfdrGRLCQCDDDCVKYGDCCPDYESLCLG 39
 
Name Accession Description Interval E-value
AMOP pfam03782
AMOP domain; This domain may have a role in cell adhesion. It is called the AMOP domain after ...
 286-426 5.25e-78

AMOP domain; This domain may have a role in cell adhesion. It is called the AMOP domain after Adhesion associated domain in MUC4 and Other Proteins. This domain is extracellular and contains a number of cysteines that probably form disulphide bridges.


Pssm-ID: 461048  Cd Length: 143  Bit Score: 248.04  E-value: 5.25e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26324762   286 ARAQCLAWEALEDQLPNFLTELPDCPCTLAQARADSGRFFTDYGCDIEHGSV--CTYHPGAVHCVRSVQACPrYGSGQQC 363
Cdd:pfam03782   1 AHDMCDNWYNCDRFLKNFLAELPSCPCTLPQALLDKGRFMPDPRCDLDWNPKetCTYHPGAVHCVRSGLPSF-SGSGQQC 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 26324762   364 CYTAAGTQLLTSDSTSGSTPDRGHDWGAPPYRTPPRVPGMSHWLYDVISFYYCCLWAPE-CPRY 426
Cdd:pfam03782  80 CYDDDGYLMLTYDSFWGSTPDRGHDWGAPPYRSPPFVPGLSHWLHDVMPFYYCCLWADEdCERY 143
AMOP smart00723
Adhesion-associated domain present in MUC4 and other proteins;
285-430 1.68e-66

Adhesion-associated domain present in MUC4 and other proteins;


Pssm-ID: 128962  Cd Length: 154  Bit Score: 217.85  E-value: 1.68e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26324762    285 WARAQCLAWEALEDQLPNF---LTELPDCPCTLAQARADSGRFFTDYGCDIEHGSVCTYHPGAVHCVRSVQACPRYGSGQ 361
Cdd:smart00723   4 WDRDMCLRWLECDGQLPNFlwdLEDLPSCPCSLPQAVADSGRFRPDDACDPDERILCTYHPGARHCIRSMQSVESTGAGQ 83

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 26324762    362 QCCYTAAGtQLLTSDSTSGSTPDRGHDWGAPPYRTPPRVPGMSHWLYDVISFYYCCLWAPE---CPRYMKRR 430
Cdd:smart00723  84 VCCYDAWG-QLMTTDDQPVIKPRRGHGAGTPPYIGSTEVPGLSHFKNDVEPYILCCKWADRpqrCTMYYWRR 154
VWD pfam00094
von Willebrand factor type D domain; Swiss:P17554 contains a vwd domain. Its function is ...
 445-610 9.45e-18

von Willebrand factor type D domain; Swiss:P17554 contains a vwd domain. Its function is unrelated but the similarity is very strong by several methods.


Pssm-ID: 459671 [Multi-domain]  Cd Length: 154  Bit Score: 80.88  E-value: 9.45e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26324762   445 SAFGDPHFVTFDGTSFSFSGNGEYVLLETT--LSDLRVQGraqpGRMPNGTQARGTGLTAVAVQEDNsdvIEVRLaggSR 522
Cdd:pfam00094   2 SVSGDPHYVTFDGVKYTFPGTCTYVLAKDCseEPDFSFSV----TNKNCNGGASGVCLKSVTVIVGD---LEITL---QK 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26324762   523 VLEVLLNQKV--LSFTEQnwmdlkGMFLSVAAQDKVSIMLSSgaGLEVGVQG-PFLSVSILLPEKFLTHTRGLLGTLNNN 599
Cdd:pfam00094  72 GGTVLVNGQKvsLPYKSD------GGEVEILGSGFVVVDLSP--GVGLQVDGdGRGQLFVTLSPSYQGKTCGLCGNYNGN 143

                         170
                  ....*....|.
gi 26324762   600 PRDDFTLRNGQ 610
Cdd:pfam00094 144 QEDDFMTPDGT 154
VWD smart00216
von Willebrand factor (vWF) type D domain; Von Willebrand factor contains several type D ...
 444-609 1.58e-17

von Willebrand factor (vWF) type D domain; Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.


Pssm-ID: 214566 [Multi-domain]  Cd Length: 163  Bit Score: 80.52  E-value: 1.58e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26324762    444 ASAFGDPHFVTFDGTSFSFSGNGEYVLLE--TTLSDLRVQGRaqpgrmPNGTQARGTGLTAVAVQEDNSDVIEVrlaggS 521
Cdd:smart00216  12 CSVSGDPHYTTFDGVAYTFPGNCYYVLAQdcSSEPTFSVLLK------NVPCGGGATCLKSVKVELNGDEIELK-----D 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26324762    522 RVLEVLLNQK--VLSFTEQNWmdlkgmFLSVAAQDKVSIMLSSGAGLEV---GVQgpflSVSILLPEKFLTHTRGLLGTL 596
Cdd:smart00216  81 DNGKVTVNGQqvSLPYKTSDG------SIQIRSSGGYLVVITSLGLIQVtfdGLT----LLSVQLPSKYRGKTCGLCGNF 150

                          170
                   ....*....|...
gi 26324762    597 NNNPRDDFTLRNG 609
Cdd:smart00216 151 DGEPEDDFRTPDG 163
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 722-776 2.33e-16

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 73.65  E-value: 2.33e-16
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 26324762 722 CGWLPPPANGHKEGL--RYLEGSVVRFSCNNGYSLVGPESSTCQADGKWSMPTPECQ 776
Cdd:cd00033   1 CPPPPVPENGTVTGSkgSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 722-775 1.58e-13

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 65.63  E-value: 1.58e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 26324762    722 CGWLPPPANGHKEG--LRYLEGSVVRFSCNNGYSLVGPESSTCQADGKWSMPTPEC 775
Cdd:smart00032   1 CPPPPDIENGTVTSssGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
722-775 4.42e-11

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 58.66  E-value: 4.42e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 26324762   722 CGWLPPPANGHKEGLR--YLEGSVVRFSCNNGYSLVGPESSTCQADGKWSMPTPEC 775
Cdd:pfam00084   1 CPPPPDIPNGKVSATKneYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 720-776 4.95e-07

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 51.96  E-value: 4.95e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 26324762  720 VSCGWLPPPANGHKEGLR--YLEGSVVRFSCNNGYSLVGPESSTCQAdGKWSMPtPECQ 776
Cdd:PHA02927 146 VKCQSPPSISNGRHNGYEdfYTDGSVVTYSCNSGYSLIGNSGVLCSG-GEWSDP-PTCQ 202
Somatomedin_B pfam01033
Somatomedin B domain;
27-62 1.18e-05

Somatomedin B domain;


Pssm-ID: 460034  Cd Length: 40  Bit Score: 42.68  E-value: 1.18e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 26324762    27 GSCSLRCGAQ---DGLCSCHPTCSGLGTCCEDFLDYCLE 62
Cdd:pfam01033   1 ESCKGRCGESfdrGRLCQCDDDCVKYGDCCPDYESLCLG 39
SO smart00201
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ...
 25-62 1.06e-03

Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.


Pssm-ID: 197571  Cd Length: 43  Bit Score: 37.35  E-value: 1.06e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 26324762     25 AQGSCSLRCGAQ---DGLCSCHPTCSGLGTCCEDFLDYCLE 62
Cdd:smart00201   1 AIGSCKGRCGESfneGNACRCDALCLSYGDCCTDYESVCKK 41
 
Name Accession Description Interval E-value
AMOP pfam03782
AMOP domain; This domain may have a role in cell adhesion. It is called the AMOP domain after ...
 286-426 5.25e-78

AMOP domain; This domain may have a role in cell adhesion. It is called the AMOP domain after Adhesion associated domain in MUC4 and Other Proteins. This domain is extracellular and contains a number of cysteines that probably form disulphide bridges.


Pssm-ID: 461048  Cd Length: 143  Bit Score: 248.04  E-value: 5.25e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26324762   286 ARAQCLAWEALEDQLPNFLTELPDCPCTLAQARADSGRFFTDYGCDIEHGSV--CTYHPGAVHCVRSVQACPrYGSGQQC 363
Cdd:pfam03782   1 AHDMCDNWYNCDRFLKNFLAELPSCPCTLPQALLDKGRFMPDPRCDLDWNPKetCTYHPGAVHCVRSGLPSF-SGSGQQC 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 26324762   364 CYTAAGTQLLTSDSTSGSTPDRGHDWGAPPYRTPPRVPGMSHWLYDVISFYYCCLWAPE-CPRY 426
Cdd:pfam03782  80 CYDDDGYLMLTYDSFWGSTPDRGHDWGAPPYRSPPFVPGLSHWLHDVMPFYYCCLWADEdCERY 143
AMOP smart00723
Adhesion-associated domain present in MUC4 and other proteins;
285-430 1.68e-66

Adhesion-associated domain present in MUC4 and other proteins;


Pssm-ID: 128962  Cd Length: 154  Bit Score: 217.85  E-value: 1.68e-66
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26324762    285 WARAQCLAWEALEDQLPNF---LTELPDCPCTLAQARADSGRFFTDYGCDIEHGSVCTYHPGAVHCVRSVQACPRYGSGQ 361
Cdd:smart00723   4 WDRDMCLRWLECDGQLPNFlwdLEDLPSCPCSLPQAVADSGRFRPDDACDPDERILCTYHPGARHCIRSMQSVESTGAGQ 83

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 26324762    362 QCCYTAAGtQLLTSDSTSGSTPDRGHDWGAPPYRTPPRVPGMSHWLYDVISFYYCCLWAPE---CPRYMKRR 430
Cdd:smart00723  84 VCCYDAWG-QLMTTDDQPVIKPRRGHGAGTPPYIGSTEVPGLSHFKNDVEPYILCCKWADRpqrCTMYYWRR 154
VWD pfam00094
von Willebrand factor type D domain; Swiss:P17554 contains a vwd domain. Its function is ...
 445-610 9.45e-18

von Willebrand factor type D domain; Swiss:P17554 contains a vwd domain. Its function is unrelated but the similarity is very strong by several methods.


Pssm-ID: 459671 [Multi-domain]  Cd Length: 154  Bit Score: 80.88  E-value: 9.45e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26324762   445 SAFGDPHFVTFDGTSFSFSGNGEYVLLETT--LSDLRVQGraqpGRMPNGTQARGTGLTAVAVQEDNsdvIEVRLaggSR 522
Cdd:pfam00094   2 SVSGDPHYVTFDGVKYTFPGTCTYVLAKDCseEPDFSFSV----TNKNCNGGASGVCLKSVTVIVGD---LEITL---QK 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26324762   523 VLEVLLNQKV--LSFTEQnwmdlkGMFLSVAAQDKVSIMLSSgaGLEVGVQG-PFLSVSILLPEKFLTHTRGLLGTLNNN 599
Cdd:pfam00094  72 GGTVLVNGQKvsLPYKSD------GGEVEILGSGFVVVDLSP--GVGLQVDGdGRGQLFVTLSPSYQGKTCGLCGNYNGN 143

                         170
                  ....*....|.
gi 26324762   600 PRDDFTLRNGQ 610
Cdd:pfam00094 144 QEDDFMTPDGT 154
VWD smart00216
von Willebrand factor (vWF) type D domain; Von Willebrand factor contains several type D ...
 444-609 1.58e-17

von Willebrand factor (vWF) type D domain; Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.


Pssm-ID: 214566 [Multi-domain]  Cd Length: 163  Bit Score: 80.52  E-value: 1.58e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26324762    444 ASAFGDPHFVTFDGTSFSFSGNGEYVLLE--TTLSDLRVQGRaqpgrmPNGTQARGTGLTAVAVQEDNSDVIEVrlaggS 521
Cdd:smart00216  12 CSVSGDPHYTTFDGVAYTFPGNCYYVLAQdcSSEPTFSVLLK------NVPCGGGATCLKSVKVELNGDEIELK-----D 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 26324762    522 RVLEVLLNQK--VLSFTEQNWmdlkgmFLSVAAQDKVSIMLSSGAGLEV---GVQgpflSVSILLPEKFLTHTRGLLGTL 596
Cdd:smart00216  81 DNGKVTVNGQqvSLPYKTSDG------SIQIRSSGGYLVVITSLGLIQVtfdGLT----LLSVQLPSKYRGKTCGLCGNF 150

                          170
                   ....*....|...
gi 26324762    597 NNNPRDDFTLRNG 609
Cdd:smart00216 151 DGEPEDDFRTPDG 163
CCP cd00033
Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) ...
 722-776 2.33e-16

Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system; SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.


Pssm-ID: 153056 [Multi-domain]  Cd Length: 57  Bit Score: 73.65  E-value: 2.33e-16
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 26324762 722 CGWLPPPANGHKEGL--RYLEGSVVRFSCNNGYSLVGPESSTCQADGKWSMPTPECQ 776
Cdd:cd00033   1 CPPPPVPENGTVTGSkgSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
CCP smart00032
Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat ...
 722-775 1.58e-13

Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR); The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.


Pssm-ID: 214478 [Multi-domain]  Cd Length: 56  Bit Score: 65.63  E-value: 1.58e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 26324762    722 CGWLPPPANGHKEG--LRYLEGSVVRFSCNNGYSLVGPESSTCQADGKWSMPTPEC 775
Cdd:smart00032   1 CPPPPDIENGTVTSssGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Sushi pfam00084
Sushi repeat (SCR repeat);
722-775 4.42e-11

Sushi repeat (SCR repeat);


Pssm-ID: 459664 [Multi-domain]  Cd Length: 56  Bit Score: 58.66  E-value: 4.42e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 26324762   722 CGWLPPPANGHKEGLR--YLEGSVVRFSCNNGYSLVGPESSTCQADGKWSMPTPEC 775
Cdd:pfam00084   1 CPPPPDIPNGKVSATKneYNYGASVSYECDPGYRLVGSPTITCQEDGTWSPPFPEC 56
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 720-776 4.95e-07

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 51.96  E-value: 4.95e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 26324762  720 VSCGWLPPPANGHKEGLR--YLEGSVVRFSCNNGYSLVGPESSTCQAdGKWSMPtPECQ 776
Cdd:PHA02927 146 VKCQSPPSISNGRHNGYEdfYTDGSVVTYSCNSGYSLIGNSGVLCSG-GEWSDP-PTCQ 202
Somatomedin_B pfam01033
Somatomedin B domain;
27-62 1.18e-05

Somatomedin B domain;


Pssm-ID: 460034  Cd Length: 40  Bit Score: 42.68  E-value: 1.18e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 26324762    27 GSCSLRCGAQ---DGLCSCHPTCSGLGTCCEDFLDYCLE 62
Cdd:pfam01033   1 ESCKGRCGESfdrGRLCQCDDDCVKYGDCCPDYESLCLG 39
SO smart00201
Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from ...
 25-62 1.06e-03

Somatomedin B -like domains; Somatomedin-B is a peptide, proteolytically excised from vitronectin, that is a growth hormone-dependent serum factor with protease-inhibiting activity.


Pssm-ID: 197571  Cd Length: 43  Bit Score: 37.35  E-value: 1.06e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 26324762     25 AQGSCSLRCGAQ---DGLCSCHPTCSGLGTCCEDFLDYCLE 62
Cdd:smart00201   1 AIGSCKGRCGESfneGNACRCDALCLSYGDCCTDYESVCKK 41
PHA02954 PHA02954
EEV membrane glycoprotein; Provisional
 725-775 1.08e-03

EEV membrane glycoprotein; Provisional


Pssm-ID: 165263 [Multi-domain]  Cd Length: 317  Bit Score: 42.00  E-value: 1.08e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 26324762  725 LPPPANGHKEGLRYLEGSVVRFSCNNGYSLVGPESSTCqADGKWSMPTPEC 775
Cdd:PHA02954 188 IPSLSNGLISGSTFSIGGVIHLSCKSGFTLTGSPSSTC-IDGKWNPVLPIC 237
PHA02927 PHA02927
secreted complement-binding protein; Provisional
 713-775 4.11e-03

secreted complement-binding protein; Provisional


Pssm-ID: 222943 [Multi-domain]  Cd Length: 263  Bit Score: 40.02  E-value: 4.11e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 26324762  713 LKSLQPVVSCGWLpppANGHKEGLRYLEGsvVRFSCNNGYSLVGPESSTCQADGKWSMPTPEC 775
Cdd:PHA02927 204 VKCPHPTISNGYL---SSGFKRSYSYNDN--VDFKCKYGYKLSGSSSSTCSPGNTWQPELPKC 261
PHA02817 PHA02817
EEV Host range protein; Provisional
 722-776 5.85e-03

EEV Host range protein; Provisional


Pssm-ID: 165167 [Multi-domain]  Cd Length: 225  Bit Score: 39.15  E-value: 5.85e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 26324762  722 CGWLPPPANG--HKEGLRYLEGSVVRFSCNNG-----YSLVGPESSTCQADGKWSMPTPECQ 776
Cdd:PHA02817  24 CCYPPSIKNGyiYNKKTEYNIGSNVTFFCGNNtrgvrYTLVGEKNIICEKDGKWNKEFPVCK 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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