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Conserved domains on  [gi|18144786|dbj|BAB80831|]
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phage-related hypothetical protein [Clostridium perfringens str. 13]

Protein Classification

HK97 gp10 family phage protein( domain architecture ID 10019845)

HK97 gp10 family phage protein similar to Bacillus subtilis phage-like element PBSX protein XkdI

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
phge_HK97_gp10 TIGR01725
phage protein, HK97 gp10 family; This model represents an uncharacterized, highly divergent ...
 8-143 2.34e-29

phage protein, HK97 gp10 family; This model represents an uncharacterized, highly divergent bacteriophage family. The family includes gp10 from HK022 and HK97. It appears related to TIGR01635, a phage morphogenesis family believed to be involved in tail completion. [Mobile and extrachromosomal element functions, Prophage functions]


:

Pssm-ID: 273775  Cd Length: 119  Bit Score: 103.27  E-value: 2.34e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18144786     8 FTGLEELIKTVEELGTEQDLEKTNKkVLKECGDLAYKTVQPLIHKSRDNSKsgrkgsrpsGHAADNIPQPKSKkikGRQY 87
Cdd:TIGR01725   1 FTGLDELLQKLEKLGKKVDKEKVRK-ALKAGANVIRAKLKSNAPVSKGKKH---------GSLRDSIVKQKDN---GVLS 67

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 18144786    88 VIVGWDKSDnskyWYMKIEEWGSSQRPPHHSFGKVNKILKKQYDNIAIKEYENLIK 143
Cdd:TIGR01725  68 VTVGPGKTA----WYARFLEFGTRYMPAQPFMRPAFKQNKPKVIKIMIEELEALIK 119
 
Name Accession Description Interval E-value
phge_HK97_gp10 TIGR01725
phage protein, HK97 gp10 family; This model represents an uncharacterized, highly divergent ...
 8-143 2.34e-29

phage protein, HK97 gp10 family; This model represents an uncharacterized, highly divergent bacteriophage family. The family includes gp10 from HK022 and HK97. It appears related to TIGR01635, a phage morphogenesis family believed to be involved in tail completion. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273775  Cd Length: 119  Bit Score: 103.27  E-value: 2.34e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18144786     8 FTGLEELIKTVEELGTEQDLEKTNKkVLKECGDLAYKTVQPLIHKSRDNSKsgrkgsrpsGHAADNIPQPKSKkikGRQY 87
Cdd:TIGR01725   1 FTGLDELLQKLEKLGKKVDKEKVRK-ALKAGANVIRAKLKSNAPVSKGKKH---------GSLRDSIVKQKDN---GVLS 67

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 18144786    88 VIVGWDKSDnskyWYMKIEEWGSSQRPPHHSFGKVNKILKKQYDNIAIKEYENLIK 143
Cdd:TIGR01725  68 VTVGPGKTA----WYARFLEFGTRYMPAQPFMRPAFKQNKPKVIKIMIEELEALIK 119
 
Name Accession Description Interval E-value
phge_HK97_gp10 TIGR01725
phage protein, HK97 gp10 family; This model represents an uncharacterized, highly divergent ...
 8-143 2.34e-29

phage protein, HK97 gp10 family; This model represents an uncharacterized, highly divergent bacteriophage family. The family includes gp10 from HK022 and HK97. It appears related to TIGR01635, a phage morphogenesis family believed to be involved in tail completion. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273775  Cd Length: 119  Bit Score: 103.27  E-value: 2.34e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 18144786     8 FTGLEELIKTVEELGTEQDLEKTNKkVLKECGDLAYKTVQPLIHKSRDNSKsgrkgsrpsGHAADNIPQPKSKkikGRQY 87
Cdd:TIGR01725   1 FTGLDELLQKLEKLGKKVDKEKVRK-ALKAGANVIRAKLKSNAPVSKGKKH---------GSLRDSIVKQKDN---GVLS 67

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 18144786    88 VIVGWDKSDnskyWYMKIEEWGSSQRPPHHSFGKVNKILKKQYDNIAIKEYENLIK 143
Cdd:TIGR01725  68 VTVGPGKTA----WYARFLEFGTRYMPAQPFMRPAFKQNKPKVIKIMIEELEALIK 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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