unnamed protein product, partial [Mus musculus]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| PRK10788 super family | cl32577 | periplasmic folding chaperone; Provisional |
19-68 | 3.51e-03 | ||
periplasmic folding chaperone; Provisional The actual alignment was detected with superfamily member PRK10788: Pssm-ID: 182731 [Multi-domain] Cd Length: 623 Bit Score: 33.83 E-value: 3.51e-03
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| Sm_like super family | cl00259 | Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to ... |
1-14 | 8.10e-03 | ||
Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm-like proteins exist in archaea as well as prokaryotes that form heptameric and hexameric ring structures similar to those found in eukaryotes. The actual alignment was detected with superfamily member cd01728: Pssm-ID: 469694 Cd Length: 74 Bit Score: 31.33 E-value: 8.10e-03
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| Name | Accession | Description | Interval | E-value | ||
| PRK10788 | PRK10788 | periplasmic folding chaperone; Provisional |
19-68 | 3.51e-03 | ||
periplasmic folding chaperone; Provisional Pssm-ID: 182731 [Multi-domain] Cd Length: 623 Bit Score: 33.83 E-value: 3.51e-03
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| LSm1 | cd01728 | Like-Sm protein 1; The eukaryotic LSm proteins (LSm1-7) assemble into a hetero-heptameric ring ... |
1-14 | 8.10e-03 | ||
Like-Sm protein 1; The eukaryotic LSm proteins (LSm1-7) assemble into a hetero-heptameric ring around the 3'-terminus of the gamma-methyl triphosphate (gamma-m-P3) capped U6 snRNA. Accumulation of uridylated RNAs in an lsm1 mutant suggests an involvement of the LSm1-7 complex in recognition of the 3' uridylation tag and recruitment of the decapping machinery. LSm1-7, together with Pat1, are also called the decapping activator. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Pssm-ID: 212475 Cd Length: 74 Bit Score: 31.33 E-value: 8.10e-03
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| Name | Accession | Description | Interval | E-value | ||
| PRK10788 | PRK10788 | periplasmic folding chaperone; Provisional |
19-68 | 3.51e-03 | ||
periplasmic folding chaperone; Provisional Pssm-ID: 182731 [Multi-domain] Cd Length: 623 Bit Score: 33.83 E-value: 3.51e-03
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| LSm1 | cd01728 | Like-Sm protein 1; The eukaryotic LSm proteins (LSm1-7) assemble into a hetero-heptameric ring ... |
1-14 | 8.10e-03 | ||
Like-Sm protein 1; The eukaryotic LSm proteins (LSm1-7) assemble into a hetero-heptameric ring around the 3'-terminus of the gamma-methyl triphosphate (gamma-m-P3) capped U6 snRNA. Accumulation of uridylated RNAs in an lsm1 mutant suggests an involvement of the LSm1-7 complex in recognition of the 3' uridylation tag and recruitment of the decapping machinery. LSm1-7, together with Pat1, are also called the decapping activator. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Pssm-ID: 212475 Cd Length: 74 Bit Score: 31.33 E-value: 8.10e-03
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| Blast search parameters | ||||
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