NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|9759611|dbj|BAB11553|]
View 

homeobox-leucine zipper protein ATHB-5 (HD-zip protein ATHB-5) [Arabidopsis thaliana]

Protein Classification

homeobox-leucine zipper protein( domain architecture ID 11079011)

homeobox-leucine zipper protein is a transcription factor that may function in plant development and/or in stress adaptation

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
72-125 2.21e-17

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 74.46  E-value: 2.21e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 9759611     72 KKRR--LGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 125
Cdd:pfam00046   1 RRKRttFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HALZ pfam02183
Homeobox associated leucine zipper;
127-168 8.06e-16

Homeobox associated leucine zipper;


:

Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 69.86  E-value: 8.06e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 9759611    127 KQLERDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAKL 168
Cdd:pfam02183   1 KQLERDYDVLKASYDALKSDFDSLKKENQKLQAELQELKEKL 42
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
72-125 2.21e-17

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 74.46  E-value: 2.21e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 9759611     72 KKRR--LGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 125
Cdd:pfam00046   1 RRKRttFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 72-125 8.95e-17

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 73.05  E-value: 8.95e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 9759611      72 KKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 125
Cdd:smart00389   4 KRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 72-128 2.25e-16

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 71.89  E-value: 2.25e-16
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 9759611   72 KKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQ 128
Cdd:cd00086   3 KRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HALZ pfam02183
Homeobox associated leucine zipper;
127-168 8.06e-16

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 69.86  E-value: 8.06e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 9759611    127 KQLERDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAKL 168
Cdd:pfam02183   1 KQLERDYDVLKASYDALKSDFDSLKKENQKLQAELQELKEKL 42
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
72-128 3.21e-10

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 57.83  E-value: 3.21e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 9759611   72 KKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQ 128
Cdd:COG5576  54 KRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKR 110
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
72-125 2.21e-17

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 74.46  E-value: 2.21e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 9759611     72 KKRR--LGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 125
Cdd:pfam00046   1 RRKRttFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 72-125 8.95e-17

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 73.05  E-value: 8.95e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 9759611      72 KKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 125
Cdd:smart00389   4 KRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 72-128 2.25e-16

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 71.89  E-value: 2.25e-16
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 9759611   72 KKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQ 128
Cdd:cd00086   3 KRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HALZ pfam02183
Homeobox associated leucine zipper;
127-168 8.06e-16

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 69.86  E-value: 8.06e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 9759611    127 KQLERDYGVLKSNFDALKRNRDSLQRDNDSLLGQIKELKAKL 168
Cdd:pfam02183   1 KQLERDYDVLKASYDALKSDFDSLKKENQKLQAELQELKEKL 42
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
72-128 3.21e-10

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 57.83  E-value: 3.21e-10
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 9759611   72 KKRRLGVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQ 128
Cdd:COG5576  54 KRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKR 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH