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Conserved domains on  [gi|10177923|dbj|BAB11334|]
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unnamed protein product [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DdrA super family cl42454
Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family ...
 121-197 6.00e-06

Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family [Replication, recombination and repair];


The actual alignment was detected with superfamily member COG4712:

Pssm-ID: 443747  Cd Length: 213  Bit Score: 45.15  E-value: 6.00e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 10177923 121 FYAPGWCGEvrdviFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDdhiedPVTAAEEIAFCRACARFGLGLYLY 197
Cdd:COG4712  52 FGPEGWQNE-----YRPLGEGGVLCRLTVRIPDEWVTKEDGAERTDVE-----PVKGGISDAFKRAAVQFGIGRYLY 118
 
Name Accession Description Interval E-value
DdrA COG4712
Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family ...
 121-197 6.00e-06

Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family [Replication, recombination and repair];


Pssm-ID: 443747  Cd Length: 213  Bit Score: 45.15  E-value: 6.00e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 10177923 121 FYAPGWCGEvrdviFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDdhiedPVTAAEEIAFCRACARFGLGLYLY 197
Cdd:COG4712  52 FGPEGWQNE-----YRPLGEGGVLCRLTVRIPDEWVTKEDGAERTDVE-----PVKGGISDAFKRAAVQFGIGRYLY 118
 
Name Accession Description Interval E-value
DdrA COG4712
Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family ...
 121-197 6.00e-06

Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family [Replication, recombination and repair];


Pssm-ID: 443747  Cd Length: 213  Bit Score: 45.15  E-value: 6.00e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 10177923 121 FYAPGWCGEvrdviFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDdhiedPVTAAEEIAFCRACARFGLGLYLY 197
Cdd:COG4712  52 FGPEGWQNE-----YRPLGEGGVLCRLTVRIPDEWVTKEDGAERTDVE-----PVKGGISDAFKRAAVQFGIGRYLY 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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