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Conserved domains on  [gi|9759472|dbj|BAB10477|]
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unnamed protein product [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
F-box_SF super family cl45894
F-box domain superfamily; This short domain is commonly found at the N-terminus of various ...
 134-171 6.99e-08

F-box domain superfamily; This short domain is commonly found at the N-terminus of various proteins, and typically co-occurs with one or more other conserved domains or motifs, such as leucine rich repeats, WD40 repeats, kelch, tub, spry, and others. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. One of the best researched roles of F-box proteins is their participation in SCF (Skp1-Cul1-F-box protein), a multi-protein complex that functions as a ubiquitin E3 ligase, where the role of the F-box protein is to recruit target substrates. Gene families containing the F-box are found greatly expanded in narrow taxonomic lineages, such as flowering plants and nematodes. In this hierarchical classification, many of the subfamilies are named according to their domain architectures.


The actual alignment was detected with superfamily member cd22157:

Pssm-ID: 459239  Cd Length: 39  Bit Score: 48.61  E-value: 6.99e-08
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 9759472  134 YLPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRF 171
Cdd:cd22157   2 SLPDDLVEEILSRLPAKSLLRFRCVCKQWNSLISSPSF 39
NanM super family cl34543
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
196-398 7.33e-08

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG3055:

Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 54.01  E-value: 7.33e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9759472  196 SSGDIHGYDVSQDKWHRIeTDLLKGRFMYSVTSIHEEIYIVGGRSMDRNSfkshRGILVFSPSIKAWRKIASMRHARSLp 275
Cdd:COG3055  88 PLNDVYVYDPATNTWTKL-APMPTPRGGATALLLDGKIYVVGGWDDGGNV----AWVEVYDPATGTWTQLAPLPTPRDH- 161

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9759472  276 iVGATEVTsefstmqtkqnrqDRRFHL---SRVGGESDVYEDPHRLSVRRQNRNSADQNGTkshrlirqkldrlnrnssk 352
Cdd:COG3055 162 -LAAAVLP-------------DGKILViggRNGSGFSNTWTTLAPLPTARAGHAAAVLGGK------------------- 208

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*....
gi 9759472  353 rfvLIAIGGTGIFdepLDSGEIYDSATNTWSEMQRLP---MGFGVVSCG 398
Cdd:COG3055 209 ---ILVFGGESGF---SDEVEAYDPATNTWTALGELPtprHGHAAVLTD 251
NanM super family cl34543
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
359-540 2.87e-03

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


The actual alignment was detected with superfamily member COG3055:

Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 39.75  E-value: 2.87e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9759472  359 IGGTGIFD---EPLDSGEIYDSATNTWSEMQRLPMGFGVVSCGIICNGIFYAYSENDKLSG-----YDIERGFWitIQTS 430
Cdd:COG3055  76 FGGFTGANpssTPLNDVYVYDPATNTWTKLAPMPTPRGGATALLLDGKIYVVGGWDDGGNVawvevYDPATGTW--TQLA 153

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9759472  431 PIP-PRVHefypklvscnhrlFMLSVSwcdeGDGQI----GRRNKAvrklweldlVYLTWTEVSVHPDAPMDWNATYVSD 505
Cdd:COG3055 154 PLPtPRDH-------------LAAAVL----PDGKIlvigGRNGSG---------FSNTWTTLAPLPTARAGHAAAVLGG 207

                       170       180       190
                ....*....|....*....|....*....|....*
gi 9759472  506 QNILMGVEMFkIFGQVLSFftvcDILTEeaSWRHV 540
Cdd:COG3055 208 KILVFGGESG-FSDEVEAY----DPATN--TWTAL 235
 
Name Accession Description Interval E-value
F-box_AtFBW1-like cd22157
F-box domain found in Arabidopsis thaliana F-box/WD-40 repeat-containing protein 1 (AtFBW1) ...
 134-171 6.99e-08

F-box domain found in Arabidopsis thaliana F-box/WD-40 repeat-containing protein 1 (AtFBW1) and similar proteins; AtFBW1, also called WD-40-associated F-box protein 1, is an F-box protein that contains four WD-40 repeats, which are separated from each other by a spacer region. Like other F-box proteins, AtFBW1 may be a component of SCF (Skp1 Cdc53 F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. This subfamily also contains many F-box only proteins that do not have any WD repeat. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438928  Cd Length: 39  Bit Score: 48.61  E-value: 6.99e-08
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 9759472  134 YLPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRF 171
Cdd:cd22157   2 SLPDDLVEEILSRLPAKSLLRFRCVCKQWNSLISSPSF 39
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
196-398 7.33e-08

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 54.01  E-value: 7.33e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9759472  196 SSGDIHGYDVSQDKWHRIeTDLLKGRFMYSVTSIHEEIYIVGGRSMDRNSfkshRGILVFSPSIKAWRKIASMRHARSLp 275
Cdd:COG3055  88 PLNDVYVYDPATNTWTKL-APMPTPRGGATALLLDGKIYVVGGWDDGGNV----AWVEVYDPATGTWTQLAPLPTPRDH- 161

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9759472  276 iVGATEVTsefstmqtkqnrqDRRFHL---SRVGGESDVYEDPHRLSVRRQNRNSADQNGTkshrlirqkldrlnrnssk 352
Cdd:COG3055 162 -LAAAVLP-------------DGKILViggRNGSGFSNTWTTLAPLPTARAGHAAAVLGGK------------------- 208

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*....
gi 9759472  353 rfvLIAIGGTGIFdepLDSGEIYDSATNTWSEMQRLP---MGFGVVSCG 398
Cdd:COG3055 209 ---ILVFGGESGF---SDEVEAYDPATNTWTALGELPtprHGHAAVLTD 251
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
 135-173 1.28e-06

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 425796  Cd Length: 43  Bit Score: 45.22  E-value: 1.28e-06
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 9759472    135 LPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFLQ 173
Cdd:pfam00646   4 LPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWK 42
FBOX smart00256
A Receptor for Ubiquitination Targets;
135-173 6.12e-06

A Receptor for Ubiquitination Targets;


Pssm-ID: 197608  Cd Length: 41  Bit Score: 43.19  E-value: 6.12e-06
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 9759472     135 LPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFLQ 173
Cdd:smart00256   1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWF 39
Kelch_6 pfam13964
Kelch motif;
221-272 2.26e-05

Kelch motif;


Pssm-ID: 404790 [Multi-domain]  Cd Length: 50  Bit Score: 41.94  E-value: 2.26e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 9759472    221 RFMYSVTSIHEEIYIVGGRSmdrNSFKSHRGILVFSPSIKAWRKIASMRHAR 272
Cdd:pfam13964   2 RTFHSVVSVGGYIYVFGGYT---NASPALNKLEVYNPLTKSWEELPPLPTPR 50
Kelch smart00612
Kelch domain;
355-398 2.73e-04

Kelch domain;


Pssm-ID: 128874 [Multi-domain]  Cd Length: 47  Bit Score: 38.69  E-value: 2.73e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 9759472     355 VLIAIGGtgiFD--EPLDSGEIYDSATNTWSE---MQRLPMGFGVVSCG 398
Cdd:smart00612   1 KIYVVGG---FDggQRLKSVEVYDPETNKWTPlpsMPTPRSGHGVAVIN 46
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
359-540 2.87e-03

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 39.75  E-value: 2.87e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9759472  359 IGGTGIFD---EPLDSGEIYDSATNTWSEMQRLPMGFGVVSCGIICNGIFYAYSENDKLSG-----YDIERGFWitIQTS 430
Cdd:COG3055  76 FGGFTGANpssTPLNDVYVYDPATNTWTKLAPMPTPRGGATALLLDGKIYVVGGWDDGGNVawvevYDPATGTW--TQLA 153

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9759472  431 PIP-PRVHefypklvscnhrlFMLSVSwcdeGDGQI----GRRNKAvrklweldlVYLTWTEVSVHPDAPMDWNATYVSD 505
Cdd:COG3055 154 PLPtPRDH-------------LAAAVL----PDGKIlvigGRNGSG---------FSNTWTTLAPLPTARAGHAAAVLGG 207

                       170       180       190
                ....*....|....*....|....*....|....*
gi 9759472  506 QNILMGVEMFkIFGQVLSFftvcDILTEeaSWRHV 540
Cdd:COG3055 208 KILVFGGESG-FSDEVEAY----DPATN--TWTAL 235
PLN02193 PLN02193
nitrile-specifier protein
 193-242 3.02e-03

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 40.32  E-value: 3.02e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 9759472   193 DGCSSGDIHGYDVSQDKWHRIETDLLK--GRFMYSVTSIHEEIYIVGGR-SMD 242
Cdd:PLN02193 338 NGCEVDDVHYYDPVQDKWTQVETFGVRpsERSVFASAAVGKHIVIFGGEiAMD 390
 
Name Accession Description Interval E-value
F-box_AtFBW1-like cd22157
F-box domain found in Arabidopsis thaliana F-box/WD-40 repeat-containing protein 1 (AtFBW1) ...
 134-171 6.99e-08

F-box domain found in Arabidopsis thaliana F-box/WD-40 repeat-containing protein 1 (AtFBW1) and similar proteins; AtFBW1, also called WD-40-associated F-box protein 1, is an F-box protein that contains four WD-40 repeats, which are separated from each other by a spacer region. Like other F-box proteins, AtFBW1 may be a component of SCF (Skp1 Cdc53 F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. This subfamily also contains many F-box only proteins that do not have any WD repeat. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438928  Cd Length: 39  Bit Score: 48.61  E-value: 6.99e-08
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 9759472  134 YLPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRF 171
Cdd:cd22157   2 SLPDDLVEEILSRLPAKSLLRFRCVCKQWNSLISSPSF 39
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
196-398 7.33e-08

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 54.01  E-value: 7.33e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9759472  196 SSGDIHGYDVSQDKWHRIeTDLLKGRFMYSVTSIHEEIYIVGGRSMDRNSfkshRGILVFSPSIKAWRKIASMRHARSLp 275
Cdd:COG3055  88 PLNDVYVYDPATNTWTKL-APMPTPRGGATALLLDGKIYVVGGWDDGGNV----AWVEVYDPATGTWTQLAPLPTPRDH- 161

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9759472  276 iVGATEVTsefstmqtkqnrqDRRFHL---SRVGGESDVYEDPHRLSVRRQNRNSADQNGTkshrlirqkldrlnrnssk 352
Cdd:COG3055 162 -LAAAVLP-------------DGKILViggRNGSGFSNTWTTLAPLPTARAGHAAAVLGGK------------------- 208

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*....
gi 9759472  353 rfvLIAIGGTGIFdepLDSGEIYDSATNTWSEMQRLP---MGFGVVSCG 398
Cdd:COG3055 209 ---ILVFGGESGF---SDEVEAYDPATNTWTALGELPtprHGHAAVLTD 251
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
 135-173 1.28e-06

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 425796  Cd Length: 43  Bit Score: 45.22  E-value: 1.28e-06
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 9759472    135 LPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFLQ 173
Cdd:pfam00646   4 LPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWK 42
F-box_AtAFR-like cd22152
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ...
 135-175 2.95e-06

F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438923  Cd Length: 45  Bit Score: 44.10  E-value: 2.95e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 9759472  135 LPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFLQMR 175
Cdd:cd22152   5 LPDDIALQCLARVPRSSHPSLSLVSKSWRSLLSSPELFRVR 45
FBOX smart00256
A Receptor for Ubiquitination Targets;
135-173 6.12e-06

A Receptor for Ubiquitination Targets;


Pssm-ID: 197608  Cd Length: 41  Bit Score: 43.19  E-value: 6.12e-06
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 9759472     135 LPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRFLQ 173
Cdd:smart00256   1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWF 39
F-box_SF cd09917
F-box domain superfamily; This short domain is commonly found at the N-terminus of various ...
 135-167 2.04e-05

F-box domain superfamily; This short domain is commonly found at the N-terminus of various proteins, and typically co-occurs with one or more other conserved domains or motifs, such as leucine rich repeats, WD40 repeats, kelch, tub, spry, and others. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. One of the best researched roles of F-box proteins is their participation in SCF (Skp1-Cul1-F-box protein), a multi-protein complex that functions as a ubiquitin E3 ligase, where the role of the F-box protein is to recruit target substrates. Gene families containing the F-box are found greatly expanded in narrow taxonomic lineages, such as flowering plants and nematodes. In this hierarchical classification, many of the subfamilies are named according to their domain architectures.


Pssm-ID: 438852  Cd Length: 35  Bit Score: 41.66  E-value: 2.04e-05
                        10        20        30
                ....*....|....*....|....*....|...
gi 9759472  135 LPDDILEMCLMRLPLTSLLNAHLVCKKWQSMAN 167
Cdd:cd09917   3 LPDEILLKILSYLDPRDLLRLSLVCKRWRELAS 35
Kelch_6 pfam13964
Kelch motif;
221-272 2.26e-05

Kelch motif;


Pssm-ID: 404790 [Multi-domain]  Cd Length: 50  Bit Score: 41.94  E-value: 2.26e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 9759472    221 RFMYSVTSIHEEIYIVGGRSmdrNSFKSHRGILVFSPSIKAWRKIASMRHAR 272
Cdd:pfam13964   2 RTFHSVVSVGGYIYVFGGYT---NASPALNKLEVYNPLTKSWEELPPLPTPR 50
F-box-like pfam12937
F-box-like; This is an F-box-like family.
 135-171 6.21e-05

F-box-like; This is an F-box-like family.


Pssm-ID: 463757 [Multi-domain]  Cd Length: 45  Bit Score: 40.54  E-value: 6.21e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 9759472    135 LPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQRF 171
Cdd:pfam12937   4 LPDEILLQIFSYLDPKDLLRLALVCRRWRELASDDSL 40
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 221-269 2.01e-04

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 39.13  E-value: 2.01e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 9759472    221 RFMYSVTSIHEEIYIVGGRSMDRnsfkSHRGILVFSPSIKAWRKIASMR 269
Cdd:pfam01344   2 RSGAGVVVVGGKIYVIGGFDGNQ----SLNSVEVYDPETNTWSKLPSMP 46
Kelch smart00612
Kelch domain;
355-398 2.73e-04

Kelch domain;


Pssm-ID: 128874 [Multi-domain]  Cd Length: 47  Bit Score: 38.69  E-value: 2.73e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 9759472     355 VLIAIGGtgiFD--EPLDSGEIYDSATNTWSE---MQRLPMGFGVVSCG 398
Cdd:smart00612   1 KIYVVGG---FDggQRLKSVEVYDPETNKWTPlpsMPTPRSGHGVAVIN 46
Kelch smart00612
Kelch domain;
233-273 3.56e-04

Kelch domain;


Pssm-ID: 128874 [Multi-domain]  Cd Length: 47  Bit Score: 38.31  E-value: 3.56e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 9759472     233 IYIVGGrsMDRNSfkSHRGILVFSPSIKAWRKIASMRHARS 273
Cdd:smart00612   2 IYVVGG--FDGGQ--RLKSVEVYDPETNKWTPLPSMPTPRS 38
F-box_FBXO45 cd22111
F-box domain found in F-box only protein 45 (FBXO45) and similar proteins; FBXO45, also called ...
 135-167 5.61e-04

F-box domain found in F-box only protein 45 (FBXO45) and similar proteins; FBXO45, also called FBX45, or F-box/SPRY domain-containing protein 1, functions as the substrate-recognition component of E3 ubiquitin ligase complexes. It is critical for synaptogenesis, neuronal migration, and synaptic transmission. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438883  Cd Length: 36  Bit Score: 37.65  E-value: 5.61e-04
                        10        20        30
                ....*....|....*....|....*....|...
gi 9759472  135 LPDDILEMCLMRLPLTSLLNAHLVCKKWQSMAN 167
Cdd:cd22111   4 LPSRVLEVIFSYLDLPDLRNCSLVCKSWYRLLN 36
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
359-540 2.87e-03

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 39.75  E-value: 2.87e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9759472  359 IGGTGIFD---EPLDSGEIYDSATNTWSEMQRLPMGFGVVSCGIICNGIFYAYSENDKLSG-----YDIERGFWitIQTS 430
Cdd:COG3055  76 FGGFTGANpssTPLNDVYVYDPATNTWTKLAPMPTPRGGATALLLDGKIYVVGGWDDGGNVawvevYDPATGTW--TQLA 153

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9759472  431 PIP-PRVHefypklvscnhrlFMLSVSwcdeGDGQI----GRRNKAvrklweldlVYLTWTEVSVHPDAPMDWNATYVSD 505
Cdd:COG3055 154 PLPtPRDH-------------LAAAVL----PDGKIlvigGRNGSG---------FSNTWTTLAPLPTARAGHAAAVLGG 207

                       170       180       190
                ....*....|....*....|....*....|....*
gi 9759472  506 QNILMGVEMFkIFGQVLSFftvcDILTEeaSWRHV 540
Cdd:COG3055 208 KILVFGGESG-FSDEVEAY----DPATN--TWTAL 235
PLN02193 PLN02193
nitrile-specifier protein
 193-242 3.02e-03

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 40.32  E-value: 3.02e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 9759472   193 DGCSSGDIHGYDVSQDKWHRIETDLLK--GRFMYSVTSIHEEIYIVGGR-SMD 242
Cdd:PLN02193 338 NGCEVDDVHYYDPVQDKWTQVETFGVRpsERSVFASAAVGKHIVIFGGEiAMD 390
PHA03098 PHA03098
kelch-like protein; Provisional
 196-436 3.82e-03

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 40.14  E-value: 3.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9759472   196 SSGDIHGYDVSQDKWHRIETdLLKGRFMYSVTSI--HEEIYIVGGrsMDRNSfKSHRGILVFSPSIKAWRKIASMRHARS 273
Cdd:PHA03098 259 MSIFTYNYITNYSPLSEINT-IIDIHYVYCFGSVvlNNVIYFIGG--MNKNN-LSVNSVVSYDTKTKSWNKVPELIYPRK 334

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9759472   274 LPIVGATevtsefstmqtkqnrqDRRFHLsrVGGE---------------SDVYEDPHRLSVRRQNRNSADQNGTkshrl 338
Cdd:PHA03098 335 NPGVTVF----------------NNRIYV--IGGIynsislntveswkpgESKWREEPPLIFPRYNPCVVNVNNL----- 391

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9759472   339 irqkldrlnrnsskrfvLIAIGGTGIFDEPLDSGEIYDSATNTWSEMQRLPMGFgVVSCGIICNGIFYA-----YSENDK 413
Cdd:PHA03098 392 -----------------IYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH-YGGCAIYHDGKIYViggisYIDNIK 453

                        250       260
                 ....*....|....*....|....*..
gi 9759472   414 ----LSGYDIERGFWiTIQTSPIPPRV 436
Cdd:PHA03098 454 vyniVESYNPVTNKW-TELSSLNFPRI 479
F-box_AtSKIP19-like cd22164
F-box domain found in Arabidopsis thaliana SKP1-interacting partner 19 (AtSKIP19) and similar ...
 133-165 6.02e-03

F-box domain found in Arabidopsis thaliana SKP1-interacting partner 19 (AtSKIP19) and similar proteins; AtSKIP19, also called F-box protein SKIP19, or F-box/LRR-repeat protein 20 (FBL20), is a component of SCF (SPK1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It interacts with CUL1 and SPK1B/ASK2. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438935 [Multi-domain]  Cd Length: 47  Bit Score: 34.88  E-value: 6.02e-03
                        10        20        30
                ....*....|....*....|....*....|....
gi 9759472  133 VYLPDDILEMCLMRL-PLTSLLNAHLVCKKWQSM 165
Cdd:cd22164   3 LDLPDDLTASILSRLgAIDILTNAQKVCKLWRRI 36
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 356-389 6.30e-03

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 34.90  E-value: 6.30e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 9759472    356 LIAIGGTgIFDEPLDSGEIYDSATNTWSEMQRLP 389
Cdd:pfam01344  14 IYVIGGF-DGNQSLNSVEVYDPETNTWSKLPSMP 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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