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Conserved domains on  [gi|9758256|dbj|BAB08755|]
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protein translation factor Sui1 homolog [Arabidopsis thaliana]

Protein Classification

SUI1 family translation initiation factor( domain architecture ID 10795724)

SUI1 family translation initiation factor is involved in the regulation of translation initiation, recognizing the start codon on mRNA by the ribosome and interacting with other components of the translation initiation complex to facilitate the assembly of the translation machinery.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SUI1_MOF2 TIGR01160
translation initiation factor SUI1, eukaryotic; Alternate name: MOF2. A similar protein family ...
 5-113 2.11e-62

translation initiation factor SUI1, eukaryotic; Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation. [Protein synthesis, Translation factors]


:

Pssm-ID: 130228  Cd Length: 110  Bit Score: 185.42  E-value: 2.11e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9758256      5 DSQVPTAFDPFADANVEDSGA-GTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVI 83
Cdd:TIGR01160   1 SIQNLKSFDPFADAGDDDSALpGTSNYIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKALKKEFACNGTVIEDPEMGEVI 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 9758256     84 QLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
Cdd:TIGR01160  81 QLQGDQRKNVCEFLISQGLLKKDQIKIHGF 110
 
Name Accession Description Interval E-value
SUI1_MOF2 TIGR01160
translation initiation factor SUI1, eukaryotic; Alternate name: MOF2. A similar protein family ...
 5-113 2.11e-62

translation initiation factor SUI1, eukaryotic; Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation. [Protein synthesis, Translation factors]


Pssm-ID: 130228  Cd Length: 110  Bit Score: 185.42  E-value: 2.11e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9758256      5 DSQVPTAFDPFADANVEDSGA-GTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVI 83
Cdd:TIGR01160   1 SIQNLKSFDPFADAGDDDSALpGTSNYIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKALKKEFACNGTVIEDPEMGEVI 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 9758256     84 QLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
Cdd:TIGR01160  81 QLQGDQRKNVCEFLISQGLLKKDQIKIHGF 110
eIF1_SUI1 cd11566
Eukaryotic initiation factor 1; eIF1/SUI1 (eukaryotic initiation factor 1) plays an important ...
 29-112 1.28e-49

Eukaryotic initiation factor 1; eIF1/SUI1 (eukaryotic initiation factor 1) plays an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.


Pssm-ID: 211318  Cd Length: 84  Bit Score: 152.30  E-value: 1.28e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9758256   29 EYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNI 108
Cdd:cd11566   1 GYIHIRIQQRNGRKTLTTVQGLPEEFDLKKILKAFKKEFACNGTVVEDPEYGEVIQLQGDQRKNIKEFLLEEGIAKKDNI 80


                ....
gi 9758256  109 KIHG 112
Cdd:cd11566  81 KVHG 84
SUI1 pfam01253
Translation initiation factor SUI1;
28-102 4.23e-25

Translation initiation factor SUI1;


Pssm-ID: 460137  Cd Length: 75  Bit Score: 89.80  E-value: 4.23e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 9758256     28 KEYVHIRVQQRNGRKSLTTVQGL-KKEYSYTKILKDLKKEFCCNGTVVQDsELGQVIQLQGDQRKNVSTFLVQAGL 102
Cdd:pfam01253   1 QPKIHIRVEQRGGRKTVTTVSGLePFGIDLKKLAKELKKKFACGGTVVKD-GGGEEIQVQGDQRDKVAELLTEKGI 75
PRK00939 PRK00939
stress response translation initiation inhibitor YciH;
31-109 7.31e-08

stress response translation initiation inhibitor YciH;


Pssm-ID: 179173  Cd Length: 99  Bit Score: 46.45  E-value: 7.31e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9758256    31 VHIRVQQRNGRKSLTTVQGL-KKEYSYTKILKDLKKEFCCNGTVVQDSelgqvIQLQGDQRKNVSTFLVQAGLvKKDNIK 109
Cdd:PRK00939  26 IKIKVDKRRYGKEVTIIEGIdPKDIDLKELAKKLKSKLACGGTVKDGR-----IELQGDHRERVKELLIKMGF-SEENIE 99
SUI1 COG0023
Translation initiation factor 1 (eIF-1/SUI1) [Translation, ribosomal structure and biogenesis]; ...
 1-101 8.11e-03

Translation initiation factor 1 (eIF-1/SUI1) [Translation, ribosomal structure and biogenesis]; Translation initiation factor 1 (eIF-1/SUI1) is part of the Pathway/BioSystem: Translation factors


Pssm-ID: 439794  Cd Length: 112  Bit Score: 33.25  E-value: 8.11e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9758256    1 MSELDSQVPTAFDPFADANVEDSGAGTKEYVH----IRVQ-QRNGR--KSLTTVQGLKKEYSYTKIL-KDLKKEFCCNGT 72
Cdd:COG0023   1 MKDKKDNSGLVYSTDPGREPEEEEEPAEELPPgdgiVRVRrETKGRkgKGVTVVTGLPLDDEDLKALaKELKKKCGCGGT 80

                        90       100
                ....*....|....*....|....*....
gi 9758256   73 VVQDselgqVIQLQGDQRKNVSTFLVQAG 101
Cdd:COG0023  81 VKDG-----EIEIQGDHRDKIKALLEKKG 104
 
Name Accession Description Interval E-value
SUI1_MOF2 TIGR01160
translation initiation factor SUI1, eukaryotic; Alternate name: MOF2. A similar protein family ...
 5-113 2.11e-62

translation initiation factor SUI1, eukaryotic; Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation. [Protein synthesis, Translation factors]


Pssm-ID: 130228  Cd Length: 110  Bit Score: 185.42  E-value: 2.11e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9758256      5 DSQVPTAFDPFADANVEDSGA-GTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVI 83
Cdd:TIGR01160   1 SIQNLKSFDPFADAGDDDSALpGTSNYIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKALKKEFACNGTVIEDPEMGEVI 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 9758256     84 QLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
Cdd:TIGR01160  81 QLQGDQRKNVCEFLISQGLLKKDQIKIHGF 110
eIF1_SUI1 cd11566
Eukaryotic initiation factor 1; eIF1/SUI1 (eukaryotic initiation factor 1) plays an important ...
 29-112 1.28e-49

Eukaryotic initiation factor 1; eIF1/SUI1 (eukaryotic initiation factor 1) plays an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.


Pssm-ID: 211318  Cd Length: 84  Bit Score: 152.30  E-value: 1.28e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9758256   29 EYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNI 108
Cdd:cd11566   1 GYIHIRIQQRNGRKTLTTVQGLPEEFDLKKILKAFKKEFACNGTVVEDPEYGEVIQLQGDQRKNIKEFLLEEGIAKKDNI 80


                ....
gi 9758256  109 KIHG 112
Cdd:cd11566  81 KVHG 84
SUI1 pfam01253
Translation initiation factor SUI1;
28-102 4.23e-25

Translation initiation factor SUI1;


Pssm-ID: 460137  Cd Length: 75  Bit Score: 89.80  E-value: 4.23e-25
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 9758256     28 KEYVHIRVQQRNGRKSLTTVQGL-KKEYSYTKILKDLKKEFCCNGTVVQDsELGQVIQLQGDQRKNVSTFLVQAGL 102
Cdd:pfam01253   1 QPKIHIRVEQRGGRKTVTTVSGLePFGIDLKKLAKELKKKFACGGTVVKD-GGGEEIQVQGDQRDKVAELLTEKGI 75
eIF1_SUI1_like cd00474
Eukaryotic initiation factor 1 and related proteins; Members of the eIF1/SUI1 (eukaryotic ...
 31-111 9.91e-17

Eukaryotic initiation factor 1 and related proteins; Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes, archaea, and some bacteria; eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. The function of non-eukaryotic family members is also unclear.


Pssm-ID: 211317  Cd Length: 78  Bit Score: 68.61  E-value: 9.91e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9758256   31 VHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVqdsELGQVIQLQGDQRKNVSTFLVQAGlVKKDNIKI 110
Cdd:cd00474   2 IHIKVEQRSGGKKVTKVEGLPAYIDLRKLADELKKKLGCGGSVE---GEKMEIEIQGDHTDQIIVALEEKG-IDKDWVEL 77


                .
gi 9758256  111 H 111
Cdd:cd00474  78 L 78
DENR_C cd11607
C-terminal domain of DENR and related proteins; DENR (density regulated protein), together ...
 31-110 5.00e-09

C-terminal domain of DENR and related proteins; DENR (density regulated protein), together with MCT-1 (multiple copies T cell malignancies), has been shown to have similar function as eIF2D translation initiation factor (also known as ligatin), which is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner.


Pssm-ID: 211320  Cd Length: 86  Bit Score: 49.09  E-value: 5.00e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9758256   31 VHIRVQQRNGRKSLTTVQGLKKEY-SYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLV-QAGLVKKDNI 108
Cdd:cd11607   3 VTIKRISRNKRKFVTTVTGLETFGiDLKKAAKLFAKKFACGASVTKGAEGKDEIVIQGDVTDDIVDLILeKWPEIDEDNI 82


                ..
gi 9758256  109 KI 110
Cdd:cd11607  83 EI 84
eIF2D_C cd11608
C-terminal domain of eIF2D and related proteins; eIF2D translation initiation factor (also ...
 31-105 5.80e-08

C-terminal domain of eIF2D and related proteins; eIF2D translation initiation factor (also known as ligatin) is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner.


Pssm-ID: 211321  Cd Length: 85  Bit Score: 46.40  E-value: 5.80e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9758256   31 VHIRVQQRNGRKSLTTVQGLKkeySY----TKILKDLKKEFCCNGTVVQDSEL--GQVIQLQGDQRKNVSTFLVQAGLVK 104
Cdd:cd11608   2 IDITTERRQGNKKVTLISGLE---SFgidpEEFAKELQKKCAASTSVSPLPGKkkGVEVQVQGNQVKFVAKLLTEKYGVP 78


                .
gi 9758256  105 K 105
Cdd:cd11608  79 K 79
PRK00939 PRK00939
stress response translation initiation inhibitor YciH;
31-109 7.31e-08

stress response translation initiation inhibitor YciH;


Pssm-ID: 179173  Cd Length: 99  Bit Score: 46.45  E-value: 7.31e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9758256    31 VHIRVQQRNGRKSLTTVQGL-KKEYSYTKILKDLKKEFCCNGTVVQDSelgqvIQLQGDQRKNVSTFLVQAGLvKKDNIK 109
Cdd:PRK00939  26 IKIKVDKRRYGKEVTIIEGIdPKDIDLKELAKKLKSKLACGGTVKDGR-----IELQGDHRERVKELLIKMGF-SEENIE 99
YciH_like cd11567
Homologs of eIF1/SUI1 including Escherichia coli YciH; Members of the eIF1/SUI1 (eukaryotic ...
 31-101 1.74e-05

Homologs of eIF1/SUI1 including Escherichia coli YciH; Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes, archaea, and some bacteria; eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. The function of non-eukaryotic family members is unclear. Escherichia coli YciH is a non-essential protein and was reported to be able to perform some of the functions of IF3 in prokaryotic initiation.


Pssm-ID: 211319  Cd Length: 76  Bit Score: 39.77  E-value: 1.74e-05
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 9758256   31 VHIRVQQR-NGRKSLTTVQGLK-KEYSYTKILKDLKKEFCCNGTVVQDselgqVIQLQGDQRKNVSTFLVQAG 101
Cdd:cd11567   3 VRVRLEKRgRGGKTVTVIEGLPlSEEDLKELAKELKKKCGCGGTVKDG-----EIELQGDHREKIKELLEKKG 70
PRK07451 PRK07451
translation initiation factor;
33-101 2.55e-04

translation initiation factor;


Pssm-ID: 236021  Cd Length: 115  Bit Score: 37.45  E-value: 2.55e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 9758256    33 IRVQ-QRNGR--KSLTTVQGLK-KEYSYTKILKDLKKeFCCNGTVVQDSElgqvIQLQGDQRKNVSTFLVQAG 101
Cdd:PRK07451  40 LRVQaTRSGRkgKTVTVITGFQhKPETLAKLLKQLKT-QCGSGGTVKDNT----IEIQGDHRQKILEILIKLG 107
SUI1 COG0023
Translation initiation factor 1 (eIF-1/SUI1) [Translation, ribosomal structure and biogenesis]; ...
 1-101 8.11e-03

Translation initiation factor 1 (eIF-1/SUI1) [Translation, ribosomal structure and biogenesis]; Translation initiation factor 1 (eIF-1/SUI1) is part of the Pathway/BioSystem: Translation factors


Pssm-ID: 439794  Cd Length: 112  Bit Score: 33.25  E-value: 8.11e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9758256    1 MSELDSQVPTAFDPFADANVEDSGAGTKEYVH----IRVQ-QRNGR--KSLTTVQGLKKEYSYTKIL-KDLKKEFCCNGT 72
Cdd:COG0023   1 MKDKKDNSGLVYSTDPGREPEEEEEPAEELPPgdgiVRVRrETKGRkgKGVTVVTGLPLDDEDLKALaKELKKKCGCGGT 80

                        90       100
                ....*....|....*....|....*....
gi 9758256   73 VVQDselgqVIQLQGDQRKNVSTFLVQAG 101
Cdd:COG0023  81 VKDG-----EIEIQGDHRDKIKALLEKKG 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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