|
Name |
Accession |
Description |
Interval |
E-value |
| KIP1 |
pfam07765 |
KIP1-like protein; This is a family of sequences found exclusively in plants. They are similar ... |
14-86 |
3.43e-40 |
|
KIP1-like protein; This is a family of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions. It has also been suggested that the protein's coiled- coils allow it to dimerize in vivo.
Pssm-ID: 429647 [Multi-domain] Cd Length: 74 Bit Score: 143.19 E-value: 3.43e-40
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 9279697 14 SWWWDSHI-PKNSKWIQQNLSDMDSKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYD 86
Cdd:pfam07765 1 SWWWDSHIrPKQSKWLQENLSEMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELINLVEEFYRSYRSLAERYD 74
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
169-871 |
2.97e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.58 E-value: 2.97e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 169 LVELGAEKEALNLQYQLSlNKFSRLEKDLEVAQKDVSGLDERASKAEIET--KILAEA---LAKLEAERDAALLRYNESM 243
Cdd:TIGR02168 195 LNELERQLKSLERQAEKA-ERYKELKAELRELELALLVLRLEELREELEElqEELKEAeeeLEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 244 QKITELEESFSHAQEDVKGLTNRATKAETEVENLKQAHSRLHSEKEAGLAEynrclemISNLEKKVRDAEENAQNFSNQS 323
Cdd:TIGR02168 274 LEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQ-------LEELESKLDELAEELAELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 324 AKAEDEIKALRHELVKVNEVKDGLRLRYQQCLETISKLEREVSHAQDNAKRLSSEVLAGAAKLKTVEDQCTLLESSNETL 403
Cdd:TIGR02168 347 EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 404 KLEADglTHKLAAKDQEIFQKQNELEKFQSLIEDEHSRYLEIEVSLKTLQSLYSQSQEEQKvitsELQSRIGMLRDLETR 483
Cdd:TIGR02168 427 LKKLE--EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA----QLQARLDSLERLQEN 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 484 nlkLEGDISSVKEENQNLSELNDSSMIFLETQKCE------------------ISSLKEIKEKLEEEVARHINQSSAFQE 545
Cdd:TIGR02168 501 ---LEGFSEGVKALLKNQSGLSGILGVLSELISVDegyeaaieaalggrlqavVVENLNAAKKAIAFLKQNELGRVTFLP 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 546 EIRRLKDEIDSLNKRYQAIMEQVNLAGLDPKSLACSVRKLqdenskLTELCNHQ--SDDKDALTEKLRELDNILRkNVCL 623
Cdd:TIGR02168 578 LDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKA------LSYLLGGVlvVDDLDNALELAKKLRPGYR-IVTL 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 624 EKLLLESNTKLDGSREKT-----------KDLQERCESLRGEKYEFIAERANLLSQLQIMTENMQKLLEKNSLLETSLSG 692
Cdd:TIGR02168 651 DGDLVRPGGVITGGSAKTnssilerrreiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 693 ANIELQCVKEKSKCFEEFFQLLKNDKAELIKERESLISQLNAVKEKLGVLEKKFTELEGKYADLQREKQFKNLQVEELRV 772
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 773 SLATEKQERASYERstdtRLADLQNNVSFLREECRSRKKEFEEELDRAVNAQVEIFILQKFIEDLEQKNFSLLIECQKYA 852
Cdd:TIGR02168 811 ELTLLNEEAANLRE----RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLE 886
|
730
....*....|....*....
gi 9279697 853 EASSFSEKLIAELESENLE 871
Cdd:TIGR02168 887 EALALLRSELEELSEELRE 905
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
145-890 |
2.81e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.56 E-value: 2.81e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 145 KRGLSQLTEYLGNSETEVESLKRTLVELGAEKEALNLQyqlslnkFSRLEKDLEVAQKDVSGLDERASKAEIETKILAEA 224
Cdd:TIGR02168 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLE-------VSELEEEIEELQKELYALANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 225 LAKLEAERDAALLRYNESMQKITELEESFSHAQEDVKGLtnratkaETEVENLKQAHSRLHSEKEaglaeynrclemisN 304
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL-------KEELESLEAELEELEAELE--------------E 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 305 LEKKVRDAEENAQNFSNQSAKAEDEIKALRHELVKVNEVKDGLRLRYQQCLETISKLEREVSHAQdnAKRLSSEVLAGAA 384
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE--LKELQAELEELEE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 385 KLKTVEDQCTLLESSNETLKLEADGLTHKLAAKDQEIFQKQNELEKFQSLIEDEHSRYLEIEVSLK----------TLQS 454
Cdd:TIGR02168 448 ELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKnqsglsgilgVLSE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 455 LYSQSQEEQKVITSELQSRIGML--RDLETRNLklegDISSVKEENQ-----------NLSELNDSSMIFLETQKCEISS 521
Cdd:TIGR02168 528 LISVDEGYEAAIEAALGGRLQAVvvENLNAAKK----AIAFLKQNELgrvtflpldsiKGTEIQGNDREILKNIEGFLGV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 522 LKEIKEKLEE----------------EVARHINQSSAFQEEIRRLKDEIDSLNKRYqAIMEQVNLAGLDPKSLACSVRKL 585
Cdd:TIGR02168 604 AKDLVKFDPKlrkalsyllggvlvvdDLDNALELAKKLRPGYRIVTLDGDLVRPGG-VITGGSAKTNSSILERRREIEEL 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 586 QDENSKLTELCNHQSDDKDALTEKLRELDNILRKnvcLEKLLLESNTKLDGSREKTKDLQERCE-------SLRGEKYEF 658
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQ---LRKELEELSRQISALRKDLARLEAEVEqleeriaQLSKELTEL 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 659 IAERANLLSQLQIMTENMQKLLEKNSLLETSLSGANIELQCVKEKSKCFEEFFQLLKNDKAELIKERESLISQLNAVKEK 738
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 739 LGVLEKKFTELEGKYADLQREKQFKNLQVEELRVSLATEKQERASYERSTDTRLADLQNNVSFLREEcRSRKKEFEEELD 818
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL-ESKRSELRRELE 918
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 9279697 819 RAvNAQVEIFILQkfIEDLEQKNFSLLiecQKYAEASSFSEKLIAELESENLEQQMEAEflvHEIDNFRGAI 890
Cdd:TIGR02168 919 EL-REKLAQLELR--LEGLEVRIDNLQ---ERLSEEYSLTLEEAEALENKIEDDEEEAR---RRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
601-1339 |
5.94e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.32 E-value: 5.94e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 601 DDKDALTEKLRELDNILRKNV----CLEKLLLESNTKLDGSREKTKDLQERCESLRGEKYEFIAERANLLSQLQIMTENM 676
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEeeleELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 677 QKLleknsllETSLSGANIELQCVKEKSKCFEEFFQLLKNDKAELIKERESLISQLNAVKEKLGVLEKKFTELE------ 750
Cdd:TIGR02168 312 ANL-------ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEeqletl 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 751 -GKYADLQREKQFKNLQVEELRVSLATEKQERasyERSTDTRLADLQNNVSFLREECRSRKKEFEEELDRAVNAQVEIFI 829
Cdd:TIGR02168 385 rSKVAQLELQIASLNNEIERLEARLERLEDRR---ERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 830 LQKFIEDLEQKNFSLLIECQKYAEASSFSEKLIAELESENLEQQMEAEFLVHEIDNFRGAICQVFKALQVEADCKTADQK 909
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEA 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 910 IAKERIP------VSRVLGEINELK---------CSLSSAEYetQRLVIENSVLLSLLGQFQSDGMKLESEKRDVEKDLE 974
Cdd:TIGR02168 542 ALGGRLQavvvenLNAAKKAIAFLKqnelgrvtfLPLDSIKG--TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALS 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 975 TIVHHYGMLKkdrlELLEMNRQLKSelIDREQRELELKAELqtehlkfenLHESYMALhqdYSDALGKNKSLHLK--FSE 1052
Cdd:TIGR02168 620 YLLGGVLVVD----DLDNALELAKK--LRPGYRIVTLDGDL---------VRPGGVIT---GGSAKTNSSILERRreIEE 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1053 LKGEICILEEENGAILEEAIALNNVSVVYQSLGSEKAEQAEAFAKNLNSLQNINSGLKQKVETLEEILKGKEVDSQELNS 1132
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1133 KLEKLQESLEEANELNDLLEHQILVKEETLRQKAIELLEAEEMLKATHNANAELCEAVEELRKDCKESRKLKGNLEKRNS 1212
Cdd:TIGR02168 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1213 ELCDLAGRQDEEIKILSnlkenlesevkllhKEIQEHRVREEFLSSELQEKSNEFGLWDAEATSFYFDLQISAVREVLLE 1292
Cdd:TIGR02168 842 DLEEQIEELSEDIESLA--------------AEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE 907
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 9279697 1293 NKVQELTGVCENLKdeavtktTEINQIKETVGFLEFEVSELKTQLSA 1339
Cdd:TIGR02168 908 SKRSELRRELEELR-------EKLAQLELRLEGLEVRIDNLQERLSE 947
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
171-886 |
9.83e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.56 E-value: 9.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 171 ELGAEKEALNLQYQLSLNKFSRLEKDLEVAQKDVSGLDERASKAEIETKILAEALAKLEAERDAALLRYNESMQ-KITEL 249
Cdd:TIGR02169 227 ELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEaEIASL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 250 EESFSHAQEDVKGLTNRATKAETEVENLKQAHSRLHSEKEAGLAEYNRCLEMISNLEKKVRDAEENAQNFSNQSAKAEDE 329
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 330 IKALRHELVKVNEVKDglrlryqqcletisKLEREVSHAQDNAKRLSSEVLAGAAKLKTVEDQCTLLESSNETLKLEADG 409
Cdd:TIGR02169 387 LKDYREKLEKLKREIN--------------ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 410 LTHKL-------AAKDQEIFQKQNELEKFQSLIEDEHSRYLEIEVSLKTLQSLYSQSQEEQKVITSELQSRIGMLRDL-- 480
Cdd:TIGR02169 453 QEWKLeqlaadlSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLgs 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 481 --ETRNLKLE------------GDISSVKEENQNLSELNDSSMIFLETQKCEISSLKEIKEKLEEEVARHIN-------Q 539
Cdd:TIGR02169 533 vgERYATAIEvaagnrlnnvvvEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDlvefdpkY 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 540 SSAFQEEIRR--LKDEIDSlNKRYQAIMEQVNLAG--------------------LDPKSLACSVRKLQDENSKLTELCN 597
Cdd:TIGR02169 613 EPAFKYVFGDtlVVEDIEA-ARRLMGKYRMVTLEGelfeksgamtggsraprggiLFSRSEPAELQRLRERLEGLKRELS 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 598 HQSDDKD----ALTEKLRELDNILRKNVCLEKLLLESNTKLDGSREKTKDLQERCESLRGEKYEFIAERANLLSQLQIMT 673
Cdd:TIGR02169 692 SLQSELRrienRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 674 ENMQKLLEKNSLLETSLSGANI---------------------------------ELQCVKEKSKCFEEFFQLLKNDKAE 720
Cdd:TIGR02169 772 EDLHKLEEALNDLEARLSHSRIpeiqaelskleeevsriearlreieqklnrltlEKEYLEKEIQELQEQRIDLKEQIKS 851
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 721 LIKERESLISQLNAVKEKLGVLEKKFTELEGKYADLQRE-----KQFKNLQVEELRVSLATEKQERASYERStdTRLADL 795
Cdd:TIGR02169 852 IEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKErdeleAQLRELERKIEELEAQIEKKRKRLSELK--AKLEAL 929
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 796 QNNVSFLREECRSRKKEFEEELDrAVNAQVEIFILQKFIEDLEQKNFSLLiecQKYAEassfSEKLIAELESENLEQQME 875
Cdd:TIGR02169 930 EEELSEIEDPKGEDEEIPEEELS-LEDVQAELQRVEEEIRALEPVNMLAI---QEYEE----VLKRLDELKEKRAKLEEE 1001
|
810
....*....|.
gi 9279697 876 AEFLVHEIDNF 886
Cdd:TIGR02169 1002 RKAILERIEEY 1012
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
159-392 |
6.92e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.74 E-value: 6.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 159 ETEVESLKRTLVELGAEKEALNLQYQLSLNKFSRLEKDLEVAQKDVSGLDERASKAEIETKILAEALAKLEAERDAALLR 238
Cdd:COG1196 266 EAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 239 YNESMQKITELEESFSHAQEDVKGLTNRATKAETEVENLKQAHSRLHSEKEAGLAEYNRCLEMISNLEKKVRDAEENAQN 318
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE 425
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 9279697 319 FSNQSAKAEDEIKALRHELVKVNEVKDGLRLRYQQCLETISKLEREVSHAQDNAKRLSSEVLAGAAKLKTVEDQ 392
Cdd:COG1196 426 LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
287-876 |
1.30e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 1.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 287 EKEAGLAEYNRCLEMISNLEKKVRDAEENAQNFSNQSAKAEDEIKALRHELVKVNEVKDGLRLRYQQCLETISKLEREVS 366
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 367 HAQDNAKRLssevlagAAKLKTVEDQCTLLESSNETLKLEADGLTHKLAAKDQEIFQKQNELEKFQSLIEDEHSRYLEIE 446
Cdd:COG1196 306 RLEERRREL-------EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 447 VSLKTLQSLYSQSQEEQKVITSELQSRIGMLRDLETRNLKLEGDISSVKEENQNLSELNDSSMIFLETQKCEISSLKEIK 526
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 527 EKLEEEVARHINQSSAFQEEIRRLKDEIDSLNKRYQAIMEQVNLAGLDPKSLAcsVRKLQDENSKLTELCNHQSDDKDAL 606
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK--AALLLAGLRGLAGAVAVLIGVEAAY 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 607 TEKLRELDNILRKNVcleklllesntkldgSREKTKDLQERCESLRGEKyefiAERANLLSQLQIMTENMQKLLEKNSLL 686
Cdd:COG1196 537 EAALEAALAAALQNI---------------VVEDDEVAAAAIEYLKAAK----AGRATFLPLDKIRARAALAAALARGAI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 687 ETSLSGANIELQCVKEKSKCFEEffQLLKNDKAELIKERESLISQLNAVKEKLGVLEKKFTELEGKYADLQREKQFKNLQ 766
Cdd:COG1196 598 GAAVDLVASDLREADARYYVLGD--TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL 675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 767 VEELRVSLATEKQERASYERSTDTRLADLQNNVSFLREECRSRKKEFEEELDRAVNAQVEIfilqkfIEDLEQKNFSLLI 846
Cdd:COG1196 676 EAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE------LLEELLEEEELLE 749
|
570 580 590
....*....|....*....|....*....|..
gi 9279697 847 ECQKYAEASSFSEkliAELESE--NLEQQMEA 876
Cdd:COG1196 750 EEALEELPEPPDL---EELEREleRLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
961-1267 |
3.18e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 3.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 961 KLESEKRDVEKDLetivhhygmLKKDRLELLEMNRQLKSELIDREQRELELKAELQTEHLKFENLHESYMALHQDYSDAL 1040
Cdd:TIGR02168 217 ELKAELRELELAL---------LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1041 GKnkslhlkFSELKGEICILEEENGAILEEAIALNNVSVVYQSLGSEKAEQAEAFAKNLNSLQNINSGLKQKVETLEEIL 1120
Cdd:TIGR02168 288 KE-------LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1121 KGKEVDSQELNSKLEKLQESLEEANELNDLLEHQILVKEETLRQKAIELLEAEEMLKATHNANAELCEAVEELRKDckes 1200
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK---- 436
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1201 rKLKGNLEKRNSELCDLAGRQD---EEIKILSNLKENLESEVKLLHKEIQEHRVREEFLSSELQEKSNEF 1267
Cdd:TIGR02168 437 -ELQAELEELEEELEELQEELErleEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFS 505
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
244-761 |
7.17e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 67.45 E-value: 7.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 244 QKITELEESFSHAQEDVKGLTNRATKAETEVENLKQAHSRLHSEKEAGLAEYNRCLE----MISNLEKKVRDA----EEN 315
Cdd:pfam15921 264 QHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSdlesTVSQLRSELREAkrmyEDK 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 316 AQNFSNQSAKAEDEIKALRHELVKVNEVKDGLRLRYQQCLETISKLEREVSHAQDNAKRLSSEVLAGAAKL----KTVED 391
Cdd:pfam15921 344 IEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIdhlrRELDD 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 392 ---QCTLLESSNETLKLEADGLTHKLAAKDQeifQKQNELEKFQSL--------------IEDEHSRYLEIEVSLKTLQS 454
Cdd:pfam15921 424 rnmEVQRLEALLKAMKSECQGQMERQMAAIQ---GKNESLEKVSSLtaqlestkemlrkvVEELTAKKMTLESSERTVSD 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 455 LYSQSQEEQKVI------TSELQSRIGmLRDLETRNLKLEGD-ISSVKEENQNLSELNDSSMIFLETQKCEISSLKE--- 524
Cdd:pfam15921 501 LTASLQEKERAIeatnaeITKLRSRVD-LKLQELQHLKNEGDhLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQlvg 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 525 -------IKEKLEEEVARHINQSSAFQEEIRRLKDEIDSLNKRYQAI-----MEQVNLAGLDPKSLAcSVRKLQDENSKL 592
Cdd:pfam15921 580 qhgrtagAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARvsdleLEKVKLVNAGSERLR-AVKDIKQERDQL 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 593 TELCNHQSDDKDALTEKLRELD-NILRKNVCLEKLLLESNTKLDGSREKTKDLQERCESLRGEKYEFIAERANLLSQLQI 671
Cdd:pfam15921 659 LNEVKTSRNELNSLSEDYEVLKrNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITA 738
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 672 MTENMQKLLEKNSLLETSLSGANIELQCVKEKSKCFEEFFQLLKNDKAELIKERESLISQLNAVKEKLGVLEKKFTELEG 751
Cdd:pfam15921 739 KRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASL 818
|
570
....*....|....
gi 9279697 752 KYAD----LQREKQ 761
Cdd:pfam15921 819 QFAEcqdiIQRQEQ 832
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
221-513 |
1.45e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.50 E-value: 1.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 221 LAEALAKLEAErdAALLRYNESMQKITELEESFSHAQEDVKGLTNRATKAETEVENLKQAHSRLHSEKEAGLAEYNRCLE 300
Cdd:COG1196 218 LKEELKELEAE--LLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 301 MISNLEKKVRDAEENAQNFSNQSAKAEDEIKALRHELVKVNEVKDGLRLRYQQCLETISKLEREVSHAQDNAKRLSSEVL 380
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 381 AGAAKLKTVEDQCTLLESSNETLKLEADGLTHKLAAKDQEIFQKQNELEKFQSLIEDEHSRYLEIEVSLKTLQSLYSQSQ 460
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 9279697 461 EEQKVITSELQSRIGMLRDLETRNLKLEGDISSVKEENQNLSELNDSSMIFLE 513
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
194-481 |
1.59e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.50 E-value: 1.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 194 EKDLEVAQKDVSGLDERASKAEIETKILAEALAKLEAERDAALLRYNESMQKITELEESFSHAQEDVKGLTNRATKAETE 273
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 274 VENLKQAHSRLHSEKEAGLAEynrclemISNLEKKVRDAEENAQNFSNQSAKAEDEIKALRHELVKVNEVKDGLRLRYQQ 353
Cdd:COG1196 304 IARLEERRRELEERLEELEEE-------LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 354 CLETISKLEREVSHAQDNAKRLSSEVLAGAAKLKTVEDQCTLLESSNETLKLEADGLTHKLAAKDQEIFQKQNELEKFQS 433
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 9279697 434 LIEDEHSRYLEIEVSLKTLQSLYSQSQEEQKVITSELQSRIGMLRDLE 481
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
535-1248 |
5.00e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 5.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 535 RHINQSSAFQEEIRRLKDEIDSLNKRYQAIMEQVNLAGLDPKSLACSVRKLQDENSKLTELCNHQSDDKDALTEKLRELD 614
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 615 -NILRKNVCLEKL---LLESNTKLDGSREKTKDLQERCESLRGEKYEFIAERANLLSQLQIMTENMQKLLEKNSLLETSL 690
Cdd:TIGR02168 316 rQLEELEAQLEELeskLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 691 SGANIELQCVKEKSKCFEEFFQLLKNDKAELIKERESliSQLNAVKEKLGVLEKKFTELEGKYADLQREKQFKNLQVEEL 770
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELERLEEALEELREELEEA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 771 RVSLATEKQERASYeRSTDTRLADLQNNVSFLREECRSRKK----------------EFEEELDRAVNAQVEIFILQKFI 834
Cdd:TIGR02168 474 EQALDAAERELAQL-QARLDSLERLQENLEGFSEGVKALLKnqsglsgilgvlseliSVDEGYEAAIEAALGGRLQAVVV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 835 EDLEQ--KNFSLLIECQK----YAEASSFSEKLIAELESENLEQQME----AEFLVHEIDNFRGAICQVFKALQVEADCK 904
Cdd:TIGR02168 553 ENLNAakKAIAFLKQNELgrvtFLPLDSIKGTEIQGNDREILKNIEGflgvAKDLVKFDPKLRKALSYLLGGVLVVDDLD 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 905 TA-----------------------------------------DQKIAKERIPVSRVLGEINELKCSLSSAEYETQRLVI 943
Cdd:TIGR02168 633 NAlelakklrpgyrivtldgdlvrpggvitggsaktnssilerRREIEELEEKIEELEEKIAELEKALAELRKELEELEE 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 944 ENSVLLSLLGQFQSDGMKLESEKRDVEKDLETIVHHYGMLKKDRLELLEMNRQLKSELIDREQRELELKAELQTEHLKFE 1023
Cdd:TIGR02168 713 ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1024 NLhesymalhqdySDALGKNKSlhlkfselkgeicILEEENGAILEEAIALNNVSVVYQSLGSEKAEQaeafAKNLNSLQ 1103
Cdd:TIGR02168 793 QL-----------KEELKALRE-------------ALDELRAELTLLNEEAANLRERLESLERRIAAT----ERRLEDLE 844
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1104 NINSGLKQKVETLEEILKGKEVDSQELNSKLEKLQESLEEANELNDLLEHQILVKEETLRQKAIELLEAEEMLKATHNAN 1183
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL 924
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 9279697 1184 AELCEAVEELRKdckesrKLKGNLEKRNSELCDLAGRQDEEIKILSNLKENLESEVKLLHKEIQE 1248
Cdd:TIGR02168 925 AQLELRLEGLEV------RIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
161-442 |
5.96e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 5.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 161 EVESLKRTLVELGAEKEALNLQYQLSLNKFSRLEKDLEVAQKDVSGLDERASKAEIETKILAEALAKLEAERDAALLRyn 240
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER-- 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 241 esmqkITELEESFSHAQEDVKGLTNRATKAETEVENLKQAHSRLHSEKEAGLAEYNRCLEMISNLEKKVRDAEENAQNFS 320
Cdd:COG1196 311 -----RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 321 NQSAKAEDEIKALRHELVKVNEVKDGLRLRYQQCLETISKLEREVSHAQDNAKRLSSEVLAGAAKLKTVEDQCTLLESSN 400
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 9279697 401 ETLKLEADGLTHKLAAKDQEIFQKQNELEKFQSLIEDEHSRY 442
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL 507
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
244-612 |
7.83e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 7.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 244 QKITELEESFSHAQEDVKGLTNRATKAETEVENLKQAHSRLHSEKEAGLAEYNRCLEMISNLEKKVRDAEENAQNFSNQS 323
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 324 AKAEDEIKALRHELVKVNEVKDGLRLRYQQCLETISKLEREVSHAQDNAKRLSSEVLAGAAKLKTVEDQCTLLESSNETL 403
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 404 KLEADGLTHKLAAKDQEIFQKQNELEKFQSLIEDEHSRYLEIEVSLKTLQSLYSQSQEEQKVITSELQSRIGMLRDLETR 483
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESK 909
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 484 NLKLEGDISSVKEENQNLSELNDSSMIFLETQKCEISSLKEIKEKLEEEVARHI-NQSSAFQEEIRRLKDEIDSLNkryq 562
Cdd:TIGR02168 910 RSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIeDDEEEARRRLKRLENKIKELG---- 985
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 9279697 563 aimeQVNLAGLDpkslacsvrKLQDENSKLTELcNHQSDDKDALTEKLRE 612
Cdd:TIGR02168 986 ----PVNLAAIE---------EYEELKERYDFL-TAQKEDLTEAKETLEE 1021
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
148-416 |
1.19e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 148 LSQLTEYLGNSETEVESLKRTLVELGAEKEALNLQYQLSLNKFSRLEKDLEVAQKDVSGLDERASKAEIETKILAEALAK 227
Cdd:COG1196 241 LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 228 LEAERDAALLRYNESMQKITELEESFSHAQEDVKGLTNRATKAETEVENLKQAHSRLHSEKEAGLAEYNRCLEMISNLEK 307
Cdd:COG1196 321 LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 308 KVRDAEENAQNFSNQSAKAEDEIKALRHELVKVNEVKDGLRLRYQQCLETISKLEREVSHAQDNAKRLSSEVLAGAAKLK 387
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260
....*....|....*....|....*....
gi 9279697 388 TVEDQCTLLESSNETLKLEADGLTHKLAA 416
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
148-819 |
1.28e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 1.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 148 LSQLTEYLGNSETEVESLKRTLVELGAEKEALNLQYQLSLNKFSRLEKDLEVA----QKDVSGLDE-RASKAEIETKI-- 220
Cdd:TIGR02168 269 LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELeaqlEELESKLDElAEELAELEEKLee 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 221 -------LAEALAKLEAERDAALLRYNESMQKITELEESFSHAQEDVKGLTNRATKAETEVENLKQAHSRLHSEKEAGL- 292
Cdd:TIGR02168 349 lkeelesLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLk 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 293 -----------AEYNRCLEMISNLEKKVRDAEENAQNFSNQSAKAEDEIKALRHELVKVNEVKDGLrlryQQCLETISKL 361
Cdd:TIGR02168 429 kleeaelkelqAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL----ERLQENLEGF 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 362 EREVSHAQDNAKRLS--------------------SEVLAGAAKLKTVEDQCTLLE-----SSNETLK---LEADGLTH- 412
Cdd:TIGR02168 505 SEGVKALLKNQSGLSgilgvlselisvdegyeaaiEAALGGRLQAVVVENLNAAKKaiaflKQNELGRvtfLPLDSIKGt 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 413 KLAAKDQEIFQKQNEL-----------EKFQSLIEDEHSRYLEIEvSLKTLQSLYSQSQEEQKVIT-------------- 467
Cdd:TIGR02168 585 EIQGNDREILKNIEGFlgvakdlvkfdPKLRKALSYLLGGVLVVD-DLDNALELAKKLRPGYRIVTldgdlvrpggvitg 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 468 ------SELQSRIGMLRDLETRNLKLEGDISSVKEENQNLSELNDSSMIFLETQKCEISSLKEIKEKLEEEVARHINQSS 541
Cdd:TIGR02168 664 gsaktnSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 542 AFQEEIRRLKDEIDSLNKRYQAIMEQvnlagldpkslacsvrkLQDENSKLTELCNHQSDDKDALTEKLRELDNilrknv 621
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEER-----------------LEEAEEELAEAEAEIEELEAQIEQLKEELKA------ 800
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 622 cLEKLLLESNTKLDGSREKTKDLQERCESLRGEKYEFIAERANLLSQLQIMTENMQKLLEKNSLLETSLSGANIELqcvk 701
Cdd:TIGR02168 801 -LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL---- 875
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 702 ekskcfeeffQLLKNDKAELIKERESLISQLNAVKEKLGVLEKKFTELEGKYADLQREKQFKNLQVEELRVSLAtEKQER 781
Cdd:TIGR02168 876 ----------EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRID-NLQER 944
|
730 740 750
....*....|....*....|....*....|....*....
gi 9279697 782 ASYERSTDTRLAD-LQNNVSFLREECRSRKKEFEEELDR 819
Cdd:TIGR02168 945 LSEEYSLTLEEAEaLENKIEDDEEEARRRLKRLENKIKE 983
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
194-774 |
1.70e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 59.67 E-value: 1.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 194 EKDLEVAQKDVSGLDERASKAEIETKILAEALAKLEAERDAA----------LLRYNESMQKITELEESFSHAQEDVKGL 263
Cdd:PRK02224 191 QLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQAretrdeadevLEEHEERREELETLEAEIEDLRETIAET 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 264 TNRATKAETEVENLKQAHSRLHSEKEAGLAEynrclemiSNLEKKVRDA-EENAQNFSNQSAKAEDEIKALRHELVKVNE 342
Cdd:PRK02224 271 EREREELAEEVRDLRERLEELEEERDDLLAE--------AGLDDADAEAvEARREELEDRDEELRDRLEECRVAAQAHNE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 343 VKDGLRlryqqclETISKLEREVSHAQDNAKRLSSEVLAGAAKLKTVEDQCTLLESSNETLKLEADGLTHKLAAkdqeif 422
Cdd:PRK02224 343 EAESLR-------EDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGN------ 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 423 qKQNELEKFQSLIEDEHSRYLEIEVSLKTLQSLYSQSQE----------EQKVITSELQSRIGmlrDLETRNLKLEGDIS 492
Cdd:PRK02224 410 -AEDFLEELREERDELREREAELEATLRTARERVEEAEAlleagkcpecGQPVEGSPHVETIE---EDRERVEELEAELE 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 493 SVKEENQNLSELNDSSMIFLETQKcEISSLKEIKEKLEEEVARHINQSSAFQEEIRRLKDEIDSLNKRYQAIMEQVNLAG 572
Cdd:PRK02224 486 DLEEEVEEVEERLERAEDLVEAED-RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAE 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 573 LDPKSLACSVRKLQDENSKLT---ELCNHQSDDKDALTEKLRELDNILRKNVCLEKLLLESNTKLDGSREKTKDLQERCE 649
Cdd:PRK02224 565 EEAEEAREEVAELNSKLAELKeriESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFD 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 650 SLRGEKYEfiAERANLLSQLQIMTENMQKLLEKNSLLETSLSGANIELQcvkekskcfeeffqllknDKAELIKEREsli 729
Cdd:PRK02224 645 EARIEEAR--EDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELE------------------ELEELRERRE--- 701
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 9279697 730 sQLNAVKEKLGVLEKKFTELEGKYADLQREKQFKNlqVEELRVSL 774
Cdd:PRK02224 702 -ALENRVEALEALYDEAEELESMYGDLRAELRQRN--VETLERML 743
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
711-1387 |
4.83e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 4.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 711 FQLLKNDKAELikERESLISQLNAVKEKLGVLEKKFTELEGKYADLQREKQFKNLQVEELRVslatEKQERASYERSTDT 790
Cdd:TIGR02168 215 YKELKAELREL--ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL----EVSELEEEIEELQK 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 791 RLADLQNNVSflreECRSRKKEFEEELDRAVNAQVEifiLQKFIEDLEQKNfslliecQKYAEASSFSEKLIAELESENL 870
Cdd:TIGR02168 289 ELYALANEIS----RLEQQKQILRERLANLERQLEE---LEAQLEELESKL-------DELAEELAELEEKLEELKEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 871 EQQMEAEFLVHEIDNFRGAICQVFKALQveadckTADQKIAKERIPVSRVLGEINELKCSLSSAEYETQRLVIENSVLLS 950
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEELEEQLE------TLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 951 LLgqfqsdgmkLESEKRDVEKDLETIVHHYGMLKKDRLELLEMNRQLKSELIDREQRELELKAELQTEHLKFENLhESYM 1030
Cdd:TIGR02168 429 KL---------EEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL-ERLQ 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1031 ALHQDYSDALGKNKSLHLKFSELKG---EICILEEENGAILEEAIA--LNNVSVVyqslGSEKAEQAEAFAKNLNS---- 1101
Cdd:TIGR02168 499 ENLEGFSEGVKALLKNQSGLSGILGvlsELISVDEGYEAAIEAALGgrLQAVVVE----NLNAAKKAIAFLKQNELgrvt 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1102 ---LQNINSGLKQKVETleEILKGKEVDSQELNSkLEKLQESLEEAneLNDLLEHQILVKEetlrqkaieLLEAEEMLKA 1178
Cdd:TIGR02168 575 flpLDSIKGTEIQGNDR--EILKNIEGFLGVAKD-LVKFDPKLRKA--LSYLLGGVLVVDD---------LDNALELAKK 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1179 THNANAELCEAVEELRKD---CKESRKLKGNLEKRNSELCDLAGRQDE----------EIKILSNLKENLESEVKLLHKE 1245
Cdd:TIGR02168 641 LRPGYRIVTLDGDLVRPGgviTGGSAKTNSSILERRREIEELEEKIEEleekiaelekALAELRKELEELEEELEQLRKE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1246 IQEHRVREEFLSSELQEKSNEFGLWDAEATSFYFDLQISAVREVLLENKVQELTGVCENLKDEAVTKTTEINQIKETVGF 1325
Cdd:TIGR02168 721 LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 9279697 1326 LEFEVSELKTQLSAYDPVVASLAEDVRSLEQNALSLMKLPVPAGRRREgvQNDEHQEAAVSQ 1387
Cdd:TIGR02168 801 LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE--ELSEDIESLAAE 860
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
302-780 |
6.57e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.72 E-value: 6.57e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 302 ISNLEKKVRDAEENAQNFSNQSAKAEDEIKALRHELVKVNEVKDGLRLRYQQCLETISKLEREVSHAQDNAKRLSSEVLA 381
Cdd:TIGR04523 28 ANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 382 GAAKLKTVEDQCTLLESSNETLKLEADGLTHKLAAKDQEIFQKQNELEKFQSLIEDEHSRYLEIEVSLKTLQSLYSQSQE 461
Cdd:TIGR04523 108 INSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 462 EQKVITSE---LQSRIGMLRDLETRNLKLEGDISSVKEENQNLSELNDSSMIFLETQKCEISSLKEIKEKLEEEVARHIN 538
Cdd:TIGR04523 188 NIDKIKNKllkLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKK 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 539 QSSAFQEEIRRLKDEIDSLNKRYQAImeqvnlagldpkslacsvrklqdeNSKLTELCNHQSDDkdaLTEKLR-ELDNIL 617
Cdd:TIGR04523 268 QLSEKQKELEQNNKKIKELEKQLNQL------------------------KSEISDLNNQKEQD---WNKELKsELKNQE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 618 RKNVCLEKLLLESNTKLDGSREKTKDLQERCESLRGEKYEFIAERANLLSQLQIMTENMQKLLEKNSLLETSLSGANIEL 697
Cdd:TIGR04523 321 KKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKI 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 698 QCVKEKSKCFEEFFQLLKNDKAELIKERESLISQLNAVKEKLGVLEKKFTELEGKYADLQREKQFKNLQVEELRVSLATE 777
Cdd:TIGR04523 401 QNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI 480
|
...
gi 9279697 778 KQE 780
Cdd:TIGR04523 481 KQN 483
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
160-733 |
6.68e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.26 E-value: 6.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 160 TEVESLKRTLVELGAEKEALNLQYQLSLNKFSRLEKDLEVAQKDVSGLDERASKAEIetkiLAEALAKLEAERDAALLRY 239
Cdd:TIGR04523 145 TEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLEL----LLSNLKKKIQKNKSLESQI 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 240 NESMQKITELEESFSHAQEDVKGLTNRATKAETEVENLKQAHSRLHSEKEAGLAEYNRCLEMISNLEKKVRDAEENAQNF 319
Cdd:TIGR04523 221 SELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDL 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 320 SNQsaKAEDEIKALRHELVKVNEVKDGLRLRYQQCLETISKLEREVSHAQDNAKRLSSEVLAGAAKLKTVEDQCTLLESS 399
Cdd:TIGR04523 301 NNQ--KEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 400 NETLKLEADGLTHKLAAKDQEIFQKQNELEKFQSLIEDEHSRYLEIEVSLKTLQSLYSQSQEEQKVITSELQSRIGMLRD 479
Cdd:TIGR04523 379 NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKN 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 480 LETRNLKLEGDIS----SVKEENQNLSELNDSsmifLETQKCEISSLkeikekleeevarhINQSSAFQEEIRRLKDEID 555
Cdd:TIGR04523 459 LDNTRESLETQLKvlsrSINKIKQNLEQKQKE----LKSKEKELKKL--------------NEEKKELEEKVKDLTKKIS 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 556 SLNKRYQAImeqvnlagldpkslacSVRKLQDEnSKLTELCNHQSDDKDALTEKLRElDNILRKNVCLEKLLLESNTKLD 635
Cdd:TIGR04523 521 SLKEKIEKL----------------ESEKKEKE-SKISDLEDELNKDDFELKKENLE-KEIDEKNKEIEELKQTQKSLKK 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 636 GSREKTKDLQErcesLRGEKYEFIAERANLLSQLQIMTENMQKLLEKNSLLETSLSGANIELQCVKEKSKCFEEFFQLLK 715
Cdd:TIGR04523 583 KQEEKQELIDQ----KEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIR 658
|
570
....*....|....*...
gi 9279697 716 NDKAELIKERESLISQLN 733
Cdd:TIGR04523 659 NKWPEIIKKIKESKTKID 676
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
612-1248 |
1.03e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.91 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 612 ELDNILRKNVCLEKLLLE--SNTKLDGSREKTKDLQERCESLRGEKYEFIAERANLLSQLQIMTENMQKLLEKNSLLETS 689
Cdd:PRK03918 136 EIDAILESDESREKVVRQilGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSE 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 690 LSGANIELQCVKEKSKCFEEffqlLKNDKAELIKERESLISQLNAVKEKLGVLEKKFTELEGKYADLQ-REKQFKNLQ-V 767
Cdd:PRK03918 216 LPELREELEKLEKEVKELEE----LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEeKVKELKELKeK 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 768 EELRVSLATEKQERASYERSTDTRLADLQNNVSFLRE---ECRSRKKEFEEELDRAVNAQVEIFILQKFIEDLEQKNfSL 844
Cdd:PRK03918 292 AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEErikELEEKEERLEELKKKLKELEKRLEELEERHELYEEAK-AK 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 845 LIECQKYAEASSFS-----EKLIAELESENLEQQMEAEFLVHEIDNFRGAICQVFKALQveadcktaDQKIAKERIPVsr 919
Cdd:PRK03918 371 KEELERLKKRLTGLtpeklEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIE--------ELKKAKGKCPV-- 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 920 vlgeinelkCSLSSAEYETQRLVIENSVLLSLLGQFQSDGMKLESEKRDVEKDLETIVHHYGMLKKDRlELLEMNRQLKS 999
Cdd:PRK03918 441 ---------CGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLK-ELAEQLKELEE 510
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1000 ELIDREQRELELKAElqtehlKFENLHESYMALHQDYS---DALGKNKSLHLKFSELKGEICILEEENGAILEEAIALNN 1076
Cdd:PRK03918 511 KLKKYNLEELEKKAE------EYEKLKEKLIKLKGEIKslkKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGF 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1077 VSVvyqSLGSEKAEQAEAFAKNLNSLQNINSGL---KQKVETLEEILKGKEVDSQELNSKLEKLQESLEEANELNDLLEH 1153
Cdd:PRK03918 585 ESV---EELEERLKELEPFYNEYLELKDAEKELereEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEY 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1154 QILVKEETLRQKAIELLEAEemLKATHNANAELCEAVEELRKDCKESRKLKGNLEKRNSELCDLAGRQDEEIKILSNLKE 1233
Cdd:PRK03918 662 EELREEYLELSRELAGLRAE--LEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKE 739
|
650
....*....|....*
gi 9279697 1234 NLESEVKLLHKEIQE 1248
Cdd:PRK03918 740 RALSKVGEIASEIFE 754
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
356-1263 |
1.18e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 356 ETISKLERevshAQDNAKRLSSEVLAGAAKLKTVEDQCtllESSNETLKLEADGLTHKLAAKDQEIFQKQNELEKFQSLI 435
Cdd:TIGR02168 176 ETERKLER----TRENLDRLEDILNELERQLKSLERQA---EKAERYKELKAELRELELALLVLRLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 436 EDEHSRYLEIEVSLKTLQSLYSQSQEEQkvitSELQSRIgmlRDLETRNLKLEGDISSVKEENQNLSELNDSSMIFLETQ 515
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEV----SELEEEI---EELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 516 KCEISSLKEIKEKLEEEVArhinqssafqeeirRLKDEIDSLNKRYQAImeqvnlagldpkslacsvrklqdenskltel 595
Cdd:TIGR02168 322 EAQLEELESKLDELAEELA--------------ELEEKLEELKEELESL------------------------------- 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 596 cnhqsddKDALTEKLRELDNILRKNVCLEKLLLESNTKLDGSREKTKDLQERCESLRGEKYEFIAERANLLSQLQimTEN 675
Cdd:TIGR02168 357 -------EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE--ELL 427
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 676 MQKLLEKNSLLETSLSGANIELQCVKEKSKCFEEFFQLLKNDKAELIKERESLISQLNAVKEKLGVLEKKFTELEGKYAD 755
Cdd:TIGR02168 428 KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEG 507
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 756 LQreKQFKNLQVEELRVSLATEKQE-RASYERSTDTRLADLQNNVsflreecrsrkkefeeeLDRAVNAQVEIfilqkfI 834
Cdd:TIGR02168 508 VK--ALLKNQSGLSGILGVLSELISvDEGYEAAIEAALGGRLQAV-----------------VVENLNAAKKA------I 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 835 EDLEQKNFSLLIECqkyaEASSFSEKLIAELESENLEQQME----AEFLVHEIDNFRGAICQVFKALQVEADCKTADQKI 910
Cdd:TIGR02168 563 AFLKQNELGRVTFL----PLDSIKGTEIQGNDREILKNIEGflgvAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELA 638
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 911 AKERIPVSRVL--GEINELKCSLSSAEYETQRLVIENSVLLSLLGQfqsDGMKLESEKRDVEKDLETivhhygmLKKDRL 988
Cdd:TIGR02168 639 KKLRPGYRIVTldGDLVRPGGVITGGSAKTNSSILERRREIEELEE---KIEELEEKIAELEKALAE-------LRKELE 708
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 989 ELLEMNRQLKSELIDREQRELELKAELQTEHLKFENLHESYMALHQDYSDALGKNKSLHLKFSELKGEICILEEENGAiL 1068
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE-L 787
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1069 EEAIAlnnvsvvyqslgsEKAEQAEAFAKNLNSLQNINSGLKQKVETLEEILKGKEVDSQELNSKLEKLQESLEEANELN 1148
Cdd:TIGR02168 788 EAQIE-------------QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1149 DLLEHQILVKEETLRQKAIELLEA----EEMLKATHNANAELCEAVEELRKDCKESRKLKGNLEKRNSELCDLAGRQDEE 1224
Cdd:TIGR02168 855 ESLAAEIEELEELIEELESELEALlnerASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
|
890 900 910
....*....|....*....|....*....|....*....
gi 9279697 1225 IKILSNLKENLESEVKLLHKEIQEHRVREEFLSSELQEK 1263
Cdd:TIGR02168 935 EVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRR 973
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
194-840 |
1.62e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 194 EKDLEVAQKDVSGLDERASKAEIETKILAEALAKLEAERDAA------------------LLRYNESMQKITELEESFSH 255
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAeryqallkekreyegyelLKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 256 AQEDVKGLTNRATKAETEVENLKQAHSRLHSE-KEAGLAEYNRCLEM-------ISNLEKKVRDAEENAQNFSNQSAKAE 327
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKiKDLGEEEQLRVKEKigeleaeIASLERSIAEKERELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 328 DEIKALRHELVKVNEVKDGLRLRYQQCLETISK------------------------------------------LEREV 365
Cdd:TIGR02169 329 AEIDKLLAEIEELEREIEEERKRRDKLTEEYAElkeeledlraeleevdkefaetrdelkdyrekleklkreineLKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 366 SHAQDNAKRLSSEVLAGAAKLKTVEDQCTLLESSNETLKLEADGLTHKL-------AAKDQEIFQKQNELEKFQSLIEDE 438
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLeqlaadlSKYEQELYDLKEEYDRVEKELSKL 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 439 HSRYLEIEVSLKTLQSLYSQSQEEQKVITSELQSRIGMLRDL----ETRNLKLE------------GDISSVKEENQNLS 502
Cdd:TIGR02169 489 QRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLgsvgERYATAIEvaagnrlnnvvvEDDAVAKEAIELLK 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 503 ELNDSSMIFLETQKCEISSLKEIKEKLEEEVARHIN-------QSSAFQEEIRR--LKDEIDSlNKRYQAIMEQVNLAG- 572
Cdd:TIGR02169 569 RRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDlvefdpkYEPAFKYVFGDtlVVEDIEA-ARRLMGKYRMVTLEGe 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 573 -------------------LDPKSLACSVRKLQDENSKLTELCNHQSDDKD----ALTEKLRELDNILRKNVCLEKLLLE 629
Cdd:TIGR02169 648 lfeksgamtggsraprggiLFSRSEPAELQRLRERLEGLKRELSSLQSELRrienRLDELSQELSDASRKIGEIEKEIEQ 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 630 SNTKLDGSREKTKDLQERCESLRGEKYEFIAERANLLSQLQIMTENMQKLLEKNSLLETSLSGANIElQCVKEKSKcfee 709
Cdd:TIGR02169 728 LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP-EIQAELSK---- 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 710 ffqlLKNDKAELIKERESLISQLNAVKEKLGVLEKKFTELEGKYADLQREKQFKNLQVEELRVSLATEKQERASYErstd 789
Cdd:TIGR02169 803 ----LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELE---- 874
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 9279697 790 TRLADLQNNVSFLREECRSRKKEFEEELDRAVNAQVEIFILQKFIEDLEQK 840
Cdd:TIGR02169 875 AALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
986-1266 |
1.85e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 1.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 986 DRLELL--EMNRQLKSeLidREQRE-----LELKAELQtehlkfenLHESYMALHQDysdalgknKSLHLKFSELKGEIC 1058
Cdd:COG1196 189 ERLEDIlgELERQLEP-L--ERQAEkaeryRELKEELK--------ELEAELLLLKL--------RELEAELEELEAELE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1059 ILEEENGAILEEAIALnnvsvvyQSLGSEKAEQAEAFAKNLNSLQNINSGLKQKVETLEEILKGKEVDSQELNSKLEKLQ 1138
Cdd:COG1196 250 ELEAELEELEAELAEL-------EAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1139 ESLEEANELNDLLEHQILVKEETLRQKAIELLEAEEMLKATHNANAELCEAVEELRKDCKESRKLKGNLEKRNSELCDLA 1218
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL 402
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 9279697 1219 GRQDEEIKILSNLKENLESEVKLLHKEIQEHRVREEFLSSELQEKSNE 1266
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
145-366 |
3.90e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 3.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 145 KRGLSQLTEYLGNSETEVESLKRTLVELGAEKEalnlqyqlslnkfsRLEKDLEVAQKDVSGLDERASKAEIETKILAEA 224
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLEEQIE--------------ELSEDIESLAAEIEELEELIEELESELEALLNE 881
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 225 LAKLEAERDAALLRYNESMQKITELEESFSHAQEDVKGLTNRATKAETEVENLKQahsRLHSEKEAGLAEYNRCLEMISN 304
Cdd:TIGR02168 882 RASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEV---RIDNLQERLSEEYSLTLEEAEA 958
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 9279697 305 LEKKVRDAEENAQ-----------NFSNQSAKAEDEIKALRHELVKVNEVKDGLRLRYQQCLETISKLEREVS 366
Cdd:TIGR02168 959 LENKIEDDEEEARrrlkrlenkikELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREAR 1031
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1087-1355 |
4.83e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.56 E-value: 4.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1087 EKAEQAEAFAKNLNSLQNINSGLKQKVETLEEILKGKEVDSQELNSKLEKLQESLEEANELNDLLEHQILVKEETLRQKA 1166
Cdd:TIGR04523 367 EKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLT 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1167 IELLEAEEMLKATHNANAELCEAVEELRKdckESRKLKGNLEKRNSELcdlaGRQDEEIKILSNLKENLESEVKLLHKEI 1246
Cdd:TIGR04523 447 NQDSVKELIIKNLDNTRESLETQLKVLSR---SINKIKQNLEQKQKEL----KSKEKELKKLNEEKKELEEKVKDLTKKI 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1247 QEHRVREEFLSSELQEKSNEFGLWDAEATSFYFDLQISavrevLLENKVQELTGVCENLKDEAVTKTTEINQIKETVGFL 1326
Cdd:TIGR04523 520 SSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE-----NLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQK 594
|
250 260
....*....|....*....|....*....
gi 9279697 1327 EFEVSELKTQLSAYDPVVASLAEDVRSLE 1355
Cdd:TIGR04523 595 EKEKKDLIKEIEEKEKKISSLEKELEKAK 623
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
99-822 |
7.09e-06 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 50.91 E-value: 7.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 99 MAEAFPNQVPfdMIEDSASSSCSEPRTPEKMPPGI---QPFYDSDSATSKRGLSQLTEYLGNSETEVESLKRTLVELGAE 175
Cdd:pfam07111 1 MAPTWASDIP--LVQSPGHQDVLERRLDTQRPTVTmweQDVSGDGQGPGRRGRSLELEGSQALSQQAELISRQLQELRRL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 176 KEALNLQYQLSLNKFSRLEKdlEVAQKDVSGLDERASKAEIETkiLAEALAKLEaerdaaLLRYNESMQKITELEESFSH 255
Cdd:pfam07111 79 EEEVRLLRETSLQQKMRLEA--QAMELDALAVAEKAGQAEAEG--LRAALAGAE------MVRKNLEEGSQRELEEIQRL 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 256 AQEDVKGLTNRATKA----ETEVENLKQAHSRLHSeKEAGLAeynrclemisnleKKVRDAEENAQNFSNQSAKAEDEIK 331
Cdd:pfam07111 149 HQEQLSSLTQAHEEAlsslTSKAEGLEKSLNSLET-KRAGEA-------------KQLAEAQKEAELLRKQLSKTQEELE 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 332 AlrhelvKVNEVKDGLRLRYQQCLETISKLEREVSHaqdnakrlsSEVLAGAAKLKtvEDQCTlLESSNETLKLEADGLT 411
Cdd:pfam07111 215 A------QVTLVESLRKYVGEQVPPEVHSQTWELER---------QELLDTMQHLQ--EDRAD-LQATVELLQVRVQSLT 276
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 412 HKLAAKDQEIFQKQNELEKfqsliedehsryLEIEVSlKTLQSLYSQSQEEQKVITSELQSrigmlRDLETRNL--KLEG 489
Cdd:pfam07111 277 HMLALQEEELTRKIQPSDS------------LEPEFP-KKCRSLLNRWREKVFALMVQLKA-----QDLEHRDSvkQLRG 338
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 490 DISSVKEENQNLSELNDSSMIFLETQKCEISSLKEIKEKLEEEVARHinqssafQEEIRRLKDEIDSLNKRYQAIMEQVN 569
Cdd:pfam07111 339 QVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRA-------QEARRRQQQQTASAEEQLKFVVNAMS 411
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 570 LAGLdpkSLACSVRKLQDENSKLTELCNHQSddkdALTEKLRELDNILRKNVCLEKLLLESNTKLDGSREKTKDLQERCE 649
Cdd:pfam07111 412 STQI---WLETTMTRVEQAVARIPSLSNRLS----YAVRKVHTIKGLMARKVALAQLRQESCPPPPPAPPVDADLSLELE 484
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 650 SLRGEKYEFIAE---RANLLSQlQIMTENMQKLLEKNSLLETSlSGANIELQCVKEKSKCFEEFFQLLKNDKAELIKERE 726
Cdd:pfam07111 485 QLREERNRLDAElqlSAHLIQQ-EVGRAREQGEAERQQLSEVA-QQLEQELQRAQESLASVGQQLEVARQGQQESTEEAA 562
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 727 SLISQLNAVKEKLG-VLEKKFTELEGK----YADLQREKQFKNLQVEELRVSLaTEKQERASYERSTDTRLADLQNNVsf 801
Cdd:pfam07111 563 SLRQELTQQQEIYGqALQEKVAEVETRlreqLSDTKRRLNEARREQAKAVVSL-RQIQHRATQEKERNQELRRLQDEA-- 639
|
730 740
....*....|....*....|.
gi 9279697 802 lREECRSRKKEFEEELDRAVN 822
Cdd:pfam07111 640 -RKEEGQRLARRVQELERDKN 659
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1081-1363 |
7.14e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 7.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1081 YQSLGSEKAE-QAEAFAKNLNSLQNINSGLKQKVETLEEILKGKEVDSQELNSKLEKLQESLEEAN-ELNDLLEHQILVK 1158
Cdd:TIGR02169 213 YQALLKEKREyEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNkKIKDLGEEEQLRV 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1159 EETLRQKAIELLEAEEMLKathnanaelcEAVEELRKDCKESRKLKGNLEKRNSELCDLAGRQDEEIKILSNLKEnlese 1238
Cdd:TIGR02169 293 KEKIGELEAEIASLERSIA----------EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE----- 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1239 vkllhkEIQEHRVREEFLSSELQEKSNEFGLWDAEATSfyfdlqisavrevlLENKVQELTGVCENLKDEAVTKTTEINQ 1318
Cdd:TIGR02169 358 ------EYAELKEELEDLRAELEEVDKEFAETRDELKD--------------YREKLEKLKREINELKRELDRLQEELQR 417
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 9279697 1319 IKETVGFLEFEVSELKTQLSAYDPVVASLAEDVRSLEQNALSLMK 1363
Cdd:TIGR02169 418 LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAA 462
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
544-1057 |
2.84e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 2.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 544 QEEIRRLKDEIDSLNKRYQAIMEQVNLAGLDPKSLACSVRKLQDENSKLTELCNHQSDDKDALTEKLRELDNILRKnvcL 623
Cdd:COG1196 280 ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE---A 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 624 EKLLLESNTKLDGSREKTKDLQERCESLRGEKYEFIAERANLLSQLQIMTENMQKLLEKNSLLETSLSGANIELQcvkek 703
Cdd:COG1196 357 EAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA----- 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 704 skcfeeffqLLKNDKAELIKERESLISQLNAVKEKLGVLEKKFTELEGKYADLQREKQFKNLQVEELRVSLATEKQERAS 783
Cdd:COG1196 432 ---------ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 784 YERSTDTRLADLQNNVSFLREECRSRKKEFEEELDRAVNAQVEIFILQKFIEDLEQknfslLIECQKYAEASSFSEKLIA 863
Cdd:COG1196 503 YEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEV-----AAAAIEYLKAAKAGRATFL 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 864 ELESENLEQQMEAEFLVHEIDnfRGAICQVFKALQVEADCKTADQKIAKERIPVSRVLGEINELKCSLSSAEYETQRLVI 943
Cdd:COG1196 578 PLDKIRARAALAAALARGAIG--AAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEG 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 944 ENSVLLSLLGQFQSDGMKLESEKRDVEKDLETIVHHYGMLKKDRLELLEMNRQLKSELIDREQRELELKAELQTEHLKFE 1023
Cdd:COG1196 656 GSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAERE 735
|
490 500 510
....*....|....*....|....*....|....
gi 9279697 1024 NLHESYMALHQDYSDALGKNKSLHLKFSELKGEI 1057
Cdd:COG1196 736 ELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
291-865 |
3.92e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 3.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 291 GLAEYNRCLEMISNLEKKVRDAEENAQNFSNQSAKAEDEIKALRHELVKVNEVKDGLRLRYQQCLETISKLEREVSHAQD 370
Cdd:PRK03918 156 GLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 371 NAKRLSS---EVLAGAAKLKTVEDQCTLLESSNETLKLEADGLTHKlAAKDQEIFQKQNELEKFQSLIEDEHSRYLEIEv 447
Cdd:PRK03918 236 LKEEIEElekELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK-VKELKELKEKAEEYIKLSEFYEEYLDELREIE- 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 448 slKTLQSLYSQSQEEQKVItSELQSRIGMLRDLETRNLKLEGDISSVKEENQNLSELNdSSMIFLETQKCEISSLKEIKE 527
Cdd:PRK03918 314 --KRLSRLEEEINGIEERI-KELEEKEERLEELKKKLKELEKRLEELEERHELYEEAK-AKKEELERLKKRLTGLTPEKL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 528 KLEEEVARhiNQSSAFQEEIRRLKDEIDSLNKRYQAIMEQVN-LAGLDPKSLACSvRKLQDEN-----SKLTELCNHQSD 601
Cdd:PRK03918 390 EKELEELE--KAKEEIEEEISKITARIGELKKEIKELKKAIEeLKKAKGKCPVCG-RELTEEHrkellEEYTAELKRIEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 602 DKDALTEKLRELDNILRKnvcLEKLLLESNT--KLDGSREKTKDLQERCESLRGEKYEFIAERANLLSQLQIMTE----N 675
Cdd:PRK03918 467 ELKEIEEKERKLRKELRE---LEKVLKKESEliKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKgeikS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 676 MQKLLEKNSLLETSLSGANIELQCVKEK-----SKCFEEFFQLLKNDKAElIKERESL----ISQLNAVKE---KLGVLE 743
Cdd:PRK03918 544 LKKELEKLEELKKKLAELEKKLDELEEElaellKELEELGFESVEELEER-LKELEPFyneyLELKDAEKElerEEKELK 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 744 KKFTELEGKYADLQR-EKQFKNL--QVEELRVSLATEKQERASYE-RSTDTRLADLQNNVSFL---REECRSRKKEFEEE 816
Cdd:PRK03918 623 KLEEELDKAFEELAEtEKRLEELrkELEELEKKYSEEEYEELREEyLELSRELAGLRAELEELekrREEIKKTLEKLKEE 702
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 9279697 817 LDRAVNAQVEIFILQKFIEDLEQ-----KNFSLLIECQKYAEASSFSEKLIAEL 865
Cdd:PRK03918 703 LEEREKAKKELEKLEKALERVEElrekvKKYKALLKERALSKVGEIASEIFEEL 756
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
264-508 |
7.77e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 7.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 264 TNRATKAETEVENLKQAHSRLHSEKEAGLAEYNRCLEMISNLEKKVRDAEENAQNFSNQSAKAEDEIKALRHELVKVNEV 343
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 344 KDGLRLRYQQCLETISKLERevshaqdnakRLSSEVLAGAAKLKTVEDQCTLLESSNETLKLEADGLTHKLAAKDQEIFQ 423
Cdd:COG4942 99 LEAQKEELAELLRALYRLGR----------QPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 424 KQNELEKFQSLIEdehsrylEIEVSLKTLQSLYSQSQEEQKVITSELQSRIGMLRDLETRNLKLEGDISSVKEENQNLSE 503
Cdd:COG4942 169 LEAERAELEALLA-------ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
....*
gi 9279697 504 LNDSS 508
Cdd:COG4942 242 RTPAA 246
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
145-477 |
1.14e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 145 KRGLSQLTEYLGNSETEVESLKRTLVELGAEKEALNLQYQLSLNKFSRLEKDLEVAQKDVSGLDERASKAEIETKILAEA 224
Cdd:TIGR02169 701 ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 225 LAKLEAErdaallrynESMQKITELEESFSHAQEDVKGLTNRATKAETEVENLKQAHSRLHSEKEAGLAEYNRCLEMISN 304
Cdd:TIGR02169 781 LNDLEAR---------LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS 851
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 305 LEKKVRDAEENAQNFSNQSAKAEDEIKALRHELVKVNEVKDGLRLRYQQCLETISKLEREVSHAQDNAKRLSSEVLAGAA 384
Cdd:TIGR02169 852 IEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEE 931
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 385 KLKTVEDQCT-LLESSNETLKLEadglthKLAAKDQEIFQKQNELEKFQSLIEDEhsrYLEIEVSLKTLQSLYSQSQEEQ 463
Cdd:TIGR02169 932 ELSEIEDPKGeDEEIPEEELSLE------DVQAELQRVEEEIRALEPVNMLAIQE---YEEVLKRLDELKEKRAKLEEER 1002
|
330
....*....|....
gi 9279697 464 KvitsELQSRIGML 477
Cdd:TIGR02169 1003 K----AILERIEEY 1012
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
246-568 |
1.26e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 246 ITELEESFSHAQEDVKGLTNRATKAETEVENLKQAHSRLHSEKE------------------AGLAEYNRCLEMISNLEK 307
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREkaeryqallkekreyegyELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 308 KVRDAEENAQNFSNQSAKAEDEIKALRHELVKVNE-VKDGLRLRYQQCLETISKLEREVSHAQDNAKRLSSEvlagaakL 386
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKkIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE-------L 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 387 KTVEDQCTLLESSNETLKLEADGLTHKLAAKDQEIFQKQNELEKFQSLIEDEHSRYLEIEVSLKTLQSLYSQSQEEQKVI 466
Cdd:TIGR02169 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 467 TSELQSRIGMLRDLETRNLKLEGDISSVKEENQNLSELNDSSMIFLETQKCEISSLKEIKEKLEEEVARHINQSSAFQEE 546
Cdd:TIGR02169 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEE 477
|
330 340
....*....|....*....|..
gi 9279697 547 IRRLKDEIDSLNKRYQAIMEQV 568
Cdd:TIGR02169 478 YDRVEKELSKLQRELAEAEAQA 499
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
712-901 |
1.44e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 712 QLLKNDKAELIKERESLISQLNAVKEKLGVLEKKFTELEGKYADLQREKQFKNLQVEELRVSLATEKQE-----RASYER 786
Cdd:COG4942 37 AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEElaellRALYRL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 787 STDTRLADLQNNVSFLR------------EECRSRKKEFEEELDRAVNAQVEifiLQKFIEDLEQKNFSLLIECQKYAEA 854
Cdd:COG4942 117 GRQPPLALLLSPEDFLDavrrlqylkylaPARREQAEELRADLAELAALRAE---LEAERAELEALLAELEEERAALEAL 193
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 9279697 855 SSFSEKLIAELESENLEQQMEAEFLVHEIDNFRGAICQVFKALQVEA 901
Cdd:COG4942 194 KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
1097-1262 |
1.72e-04 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 45.57 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1097 KNLNSLQNINSGLKQKVETLEeilKGKEVDSQELNSKLEKLQESLEEANELNDLLEHQILVKEetlRQKAIELLEAEEML 1176
Cdd:pfam15905 152 KKMSSLSMELMKLRNKLEAKM---KEVMAKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLVSTE---KEKIEEKSETEKLL 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1177 kathNANAELCEAVEELRKDCKESRKLKGNLEKRNSELCDLAGRQDEEIKILSNLKENLESEVKLLHKEIQ----EHRVR 1252
Cdd:pfam15905 226 ----EYITELSCVSEQVEKYKLDIAQLEELLKEKNDEIESLKQSLEEKEQELSKQIKDLNEKCKLLESEKEellrEYEEK 301
|
170
....*....|
gi 9279697 1253 EEFLSSELQE 1262
Cdd:pfam15905 302 EQTLNAELEE 311
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
777-1253 |
2.17e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 2.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 777 EKQERASYER--STDTRLADLQNNVSFL---REECRSRKKEFEEELDRAVNAQVEIFILQKFIEDLEQKNFSLLIECQKY 851
Cdd:PRK02224 198 EKEEKDLHERlnGLESELAELDEEIERYeeqREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREEL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 852 AEASSFSEKLIAELESENLEQQMEAEFLVHEIDnfrgAICQVFKALqvEADCKTADQKIAKERIPVSRVLGEINELKCSL 931
Cdd:PRK02224 278 AEEVRDLRERLEELEEERDDLLAEAGLDDADAE----AVEARREEL--EDRDEELRDRLEECRVAAQAHNEEAESLREDA 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 932 SSAEYETQRLVIENSVLLSLLGQFQSDGMKLESEKRDVEKDLETIVHHYGMLKKDRLELLEMNRQLKSELIDREQRELEL 1011
Cdd:PRK02224 352 DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1012 KAELQTEHlkfENLHESYMALHQDYSDALGKnkslhlkfsELKGE--ICILEEENGAILEEAIALNNVSVVYQSLgSEKA 1089
Cdd:PRK02224 432 EATLRTAR---ERVEEAEALLEAGKCPECGQ---------PVEGSphVETIEEDRERVEELEAELEDLEEEVEEV-EERL 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1090 EQAEAFAKNLNSLQNinsgLKQKVETLEEILKGKEvdsQELNSKLEKLQESLEEANELNDLLEhqilVKEETLRQKAIEL 1169
Cdd:PRK02224 499 ERAEDLVEAEDRIER----LEERREDLEELIAERR---ETIEEKRERAEELRERAAELEAEAE----EKREAAAEAEEEA 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1170 LEAEEMLKATHNANAELCEAVEELRK---DCKESRKLKGNLEKRNSELCDLAGRQDEEIKILSNLKEnlesEVKLLHKEI 1246
Cdd:PRK02224 568 EEAREEVAELNSKLAELKERIESLERirtLLAAIADAEDEIERLREKREALAELNDERRERLAEKRE----RKRELEAEF 643
|
....*..
gi 9279697 1247 QEHRVRE 1253
Cdd:PRK02224 644 DEARIEE 650
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
188-760 |
2.22e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 2.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 188 NKFSRLEKDLEVAQKD-------VSGLDERASKAEIETKILAEALAKLEAERDAALLRYNESMQKITELEESFSHAQEDV 260
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNElknkekeLKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 261 KGLTNRATKAETEVENLKQahsrlhsEKEAGLAEYNRCLEMISNLEKKVRDAEENAQNFSNQSAKAEDEIKALRHELVKV 340
Cdd:TIGR04523 113 KNDKEQKNKLEVELNKLEK-------QKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNI 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 341 NEVKDGLRL-----------------RYQQCLETISKLEREVSHAQDNAKRLSSEVLAGAAKLKTVEDQCTLLESSNETL 403
Cdd:TIGR04523 186 QKNIDKIKNkllklelllsnlkkkiqKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKI 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 404 KLEADGLTHKLAAKDQEIFQKQNEL------------EKFQSLIEDEHSRYLEIEVSLKTLQSLYSQSQEEQKVITSELQ 471
Cdd:TIGR04523 266 KKQLSEKQKELEQNNKKIKELEKQLnqlkseisdlnnQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQIS 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 472 SRIGMLRDLETRNLKLEGDISSVKEENQNLSELNDSSMIFLETQKCEISSLKEIKEKLEeevarhiNQSSAFQEEIRRLK 551
Cdd:TIGR04523 346 QLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE-------KLNQQKDEQIKKLQ 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 552 DEIDSLNKRYQAIMEQVNLAGLDPKSLACSVRKLQDENSKLTELCNHQSDDKDALTEKLRELDNILRKNvclEKLLLESN 631
Cdd:TIGR04523 419 QEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQK---QKELKSKE 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 632 TKLDGSREKTKDLQERCESLRGEKYEF----------IAERANLLSQLQIMTENMQKLLeKNSLLETSLSGANIELQCVK 701
Cdd:TIGR04523 496 KELKKLNEEKKELEEKVKDLTKKISSLkekiekleseKKEKESKISDLEDELNKDDFEL-KKENLEKEIDEKNKEIEELK 574
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 9279697 702 EKSKCFEEFFQLLKNDKAELIKERESLISQLNAVKEKLGVLEKKFTELEGKYADLQREK 760
Cdd:TIGR04523 575 QTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSII 633
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
384-1210 |
2.24e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 384 AKLKTVEDQCTLLESSNETLKLEADGLTHKLAAKDQEIFQKQNELEKFQSLIEDEHSRYLEIEVSLKTLQSLYSQSQEEQ 463
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 464 KVITSELQSRIGMLRDLETRNLKLEGDISSVKEENQNLSELNDSSMIFLETQKCEISSLKEIKEKLEEEVARHINQSSAF 543
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 544 QEEIRRLKDEIDSLNKRYQAIMEQVNLAGLDPKSLACSVRKLQDENSKLTElcnhQSDDKDALTEKLRELDNILRKNVCL 623
Cdd:pfam02463 334 KEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESE----RLSSAAKLKEEELELKSEEEKEAQL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 624 EKLLLESNTKLDGSREKTKDLQERCESLRGEKYEFIAERANLLSQLQIMTENMQKLLEKNSLLETslsgANIELQCVKEK 703
Cdd:pfam02463 410 LLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLL----KETQLVKLQEQ 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 704 SKCFEEFFQLLKNDKAELIKERESLISQLNAVKEKLGVLEKKFTELEGKYADLQREKQFKNLQVEELRVSLATEKQERAS 783
Cdd:pfam02463 486 LELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQK 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 784 YERSTDTRLADLQNNVSFLREECRSRKKEFEEELDRAVNaqvEIFILQKFIEDLEQKNFSLLIECQKYAEASSFSEKLIA 863
Cdd:pfam02463 566 LVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILN---LAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAK 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 864 ELESENLEQQMEAEFLVHEIDNFRGAICQVFKALQVEADCKTADQKIAKERIPVSRVLGEINELKCSLSSAEYETQRLVI 943
Cdd:pfam02463 643 AKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEEL 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 944 ENSVLLSLLGQFQSDGMKLESEKRDVEKDLETIVHHYGMLKKDRLELLEMNrqlkSELIDREQRELELKAELQTEHLKFE 1023
Cdd:pfam02463 723 LADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKE----KELAEEREKTEKLKVEEEKEEKLKA 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1024 NLHESYMALHQDYSDALGKNKSLHLKFSELKGEICILEEENGAILEEAIALNNVSVVYQSLGSEKAEQAEAFAKNL---- 1099
Cdd:pfam02463 799 QEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLkeee 878
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1100 NSLQNINSGLKQKVETLEEILKGKEVDSQELNSKLEKLQESLEEANELNDLLEHQILVKEETLRQKAIELLEAEEMLKAT 1179
Cdd:pfam02463 879 LEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEE 958
|
810 820 830
....*....|....*....|....*....|.
gi 9279697 1180 HNANAELCEAVEELRKDCKESRKLKGNLEKR 1210
Cdd:pfam02463 959 EERNKRLLLAKEELGKVNLMAIEEFEEKEER 989
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
714-1204 |
2.38e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 2.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 714 LKNDKAELIKER----ESLISQLNAVKEKLGVLEKKftelEGKYADLQREKQFKNLQVEELRVSLATEKQERASYERSTD 789
Cdd:COG4717 51 LEKEADELFKPQgrkpELNLKELKELEEELKEAEEK----EEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 790 TRLADLQnnvsflREECRSRKKEFEEELDRAVNAQVEIFILQKFIEDLEQknfslliecqkyaEASSFSEKLIAELESEN 869
Cdd:COG4717 127 LLPLYQE------LEALEAELAELPERLEELEERLEELRELEEELEELEA-------------ELAELQEELEELLEQLS 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 870 LEQQMEAEFLVHEIDNFRGAIcqvfkalqveadcKTADQKIAKERIPVSRVLGEINELKCSLSSAE-----YETQRLVIE 944
Cdd:COG4717 188 LATEEELQDLAEELEELQQRL-------------AELEEELEEAQEELEELEEELEQLENELEAAAleerlKEARLLLLI 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 945 NSVLLSLLGQFQSDGMKLESEKRDVEKDLETIVHHYGMLKKDRLELLEMNRQLKSELIDREQRELELKAELQTEHLKFEN 1024
Cdd:COG4717 255 AAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDL 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1025 LHESYMALHQDYSDALGKNKSLHLKFSELkgEICILEEENGAILEEAIALNNVSVVyqslgsEKAEQAEAFAKNLNSLQN 1104
Cdd:COG4717 335 SPEELLELLDRIEELQELLREAEELEEEL--QLEELEQEIAALLAEAGVEDEEELR------AALEQAEEYQELKEELEE 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1105 INSGLKQKVETLEEILkgKEVDSQELNSKLEKLQESLEEANElndllEHQILVKEETLRQKAIELLEAEEMLkatHNANA 1184
Cdd:COG4717 407 LEEQLEELLGELEELL--EALDEEELEEELEELEEELEELEE-----ELEELREELAELEAELEQLEEDGEL---AELLQ 476
|
490 500
....*....|....*....|
gi 9279697 1185 ELCEAVEELRKDCKESRKLK 1204
Cdd:COG4717 477 ELEELKAELRELAEEWAALK 496
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1091-1276 |
3.07e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 3.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1091 QAEAFAKNLNSLQNINSGLKQKVETLEEILKGKEVDSQELNSKLEKLQESLEEANELNDLLEHQILVKEETLRQKAIE-- 1168
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARAly 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1169 -----------LLEAE---------EMLKATHNANAELceaVEELRKDCKESRKLKGNLEKRNSELCDLAGRQDEEIKIL 1228
Cdd:COG3883 97 rsggsvsyldvLLGSEsfsdfldrlSALSKIADADADL---LEELKADKAELEAKKAELEAKLAELEALKAELEAAKAEL 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 9279697 1229 SNLKENLESEVKLLHKEIQEHRVREEFLSSELQEKSNEFGLWDAEATS 1276
Cdd:COG3883 174 EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
606-1248 |
3.62e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 3.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 606 LTEKLRELDNILRKNVCLEKLLLESNTKLDGSREKTKDL-QERCESLRGEKYEFIAERANLLSQLQIMTENMQKLLEKNS 684
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 685 LLETslsganiELQCVKEKSKCFEEFFQLLKNDKAELIKERESLISQLNAVKEKLGVLEKKFTELEGKYADLQREKQFKN 764
Cdd:TIGR02169 326 KLEA-------EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 765 LQVEELRVSLaTEKQERAsyeRSTDTRLADLQNNVSFLREECRSRKKEFEEELDRAVNAQVEIFILQKFIEDLEQKNFSL 844
Cdd:TIGR02169 399 REINELKREL-DRLQEEL---QRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 845 LIECQKYAEASSFSEKLIAELESE--NLEQQMEAEFLVHEI--DNFRGAICQVFKALQVEADCKTA-------------- 906
Cdd:TIGR02169 475 KEEYDRVEKELSKLQRELAEAEAQarASEERVRGGRAVEEVlkASIQGVHGTVAQLGSVGERYATAievaagnrlnnvvv 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 907 -DQKIAKE-------------------RIPVSRVLGEINELKCSLSSA----EYETQ-----RLVIENSVLLS------- 950
Cdd:TIGR02169 555 eDDAVAKEaiellkrrkagratflplnKMRDERRDLSILSEDGVIGFAvdlvEFDPKyepafKYVFGDTLVVEdieaarr 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 951 LLGQFQSdgMKLESEKrdVEKD------LETIVHHYGMLKKDRLELLEMNRQ----------LKSELIDREQRELELKAE 1014
Cdd:TIGR02169 635 LMGKYRM--VTLEGEL--FEKSgamtggSRAPRGGILFSRSEPAELQRLRERleglkrelssLQSELRRIENRLDELSQE 710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1015 LQTEHLKFENLHESYMALHQDYSDALGKNKSLHLKFSELKGEICILEEENGAILEEAIALNNVSVVYQ-SLGSEKAEQAE 1093
Cdd:TIGR02169 711 LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEeALNDLEARLSH 790
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1094 AFAKNlnsLQNINSGLKQKVETLEEILKGKEVDSQELNSKLEKLQESLEEANELNDLLEHQILVKEETLRQKAIELLEAE 1173
Cdd:TIGR02169 791 SRIPE---IQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELE 867
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 9279697 1174 EMLKATHNANAELCEAVEELRKDCKESRKLKGNLEKRNSELCDLAGRQDEEIKILSNLKENLESEVKLLHKEIQE 1248
Cdd:TIGR02169 868 EELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
159-339 |
4.22e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 4.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 159 ETEVESLKRTLVELGAEKEALNLQYQL---------SLNKFSRLEKDLEVAQKDVSGLDE-----RASKAEIETkiLAEA 224
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDAlqerrealqRLAEYSWDEIDVASAEREIAELEAelerlDASSDDLAA--LEEQ 693
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 225 LAKLEAERDAALLRYNESMQKITELEESFSHAQEDVKGLTNRATKAETEVEnlkqahsrlhSEKEAGLAEYNRcLEMISN 304
Cdd:COG4913 694 LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR----------LELRALLEERFA-AALGDA 762
|
170 180 190
....*....|....*....|....*....|....*
gi 9279697 305 LEKKVRdaeenaQNFSNQSAKAEDEIKALRHELVK 339
Cdd:COG4913 763 VERELR------ENLEERIDALRARLNRAEEELER 791
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
153-877 |
5.63e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 5.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 153 EYLGNSETEVESLKRTLV--ELGAEKEALNLQYQLSLNKFSRLEKDLEVAQKDVSGLDERASKAEIETKILAEalakLEA 230
Cdd:pfam02463 211 EYYQLKEKLELEEEYLLYldYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKL----QEE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 231 ERDAALLRYNESMQKITELEESFSHAQEDVKGLTNRATKAETEVENLKQAHSRLHSEKEAGLAEYNRCLEMISNLEKKVR 310
Cdd:pfam02463 287 ELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 311 DAEENAQNFSNQSAKAEDEIKALRHELVKVNEVKDglrlryqqclETISKLEREVSHAQDNAKRLSSEVLAGAAKLKTVE 390
Cdd:pfam02463 367 KLEQLEEELLAKKKLESERLSSAAKLKEEELELKS----------EEEKEAQLLLELARQLEDLLKEEKKEELEILEEEE 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 391 DQCTLLESSNETLKLEADGLTHKLAAKDQEIFQKQNELEKFQSLIEDEHSRYLEIEVSLKTLQSLYSQSQEEQKVITSEL 470
Cdd:pfam02463 437 ESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALI 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 471 QSrigmlrdletrnlkLEGDISSVKEENQNLSELNDSSMIFLETQKCEISSLKEIKEKLEEEVARHINQSSAFQEEIRRL 550
Cdd:pfam02463 517 KD--------------GVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRL 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 551 KDEIDSLNKRYQAIMEQVNLAGLDPKSLACSVRKLQDENSKLTELcNHQSDDKDALTEKLRELDNILRKNVCLEKLLLES 630
Cdd:pfam02463 583 LIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEG-ILKDTELTKLKESAKAKESGLRKGVSLEEGLAEK 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 631 NTKLDGSREKTKDLQERCESLRGEKYEFIAERANLLSQLQIMTENMQKLLEKNSLLEtslsGANIELQCVKEKSKCFEEF 710
Cdd:pfam02463 662 SEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLE----AEELLADRVQEAQDKINEE 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 711 FQLLKNDKAELIKERESLISQLNAVKEKlgvleKKFTELEGKYADLQREKQFKNLQVEELR-VSLATEKQERASYERSTD 789
Cdd:pfam02463 738 LKLLKQKIDEEEEEEEKSRLKKEEKEEE-----KSELSLKEKELAEEREKTEKLKVEEEKEeKLKAQEEELRALEEELKE 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 790 TRLADLQNNVSFLREECRSRK------KEFEEELDRAVNAQVEIFILQKFIEDLEQKNFSLLIECQKYAEASSFSEKLIA 863
Cdd:pfam02463 813 EAELLEEEQLLIEQEEKIKEEeleelaLELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKE 892
|
730
....*....|....
gi 9279697 864 ELESENLEQQMEAE 877
Cdd:pfam02463 893 EKEKEEKKELEEES 906
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
696-1355 |
5.96e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 5.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 696 ELQCVKEKSKCFEEFFQLLKNDKAELIKERESLIsQLNAVKEKLGvlEKKFTELEGKYADLQREKQFKNLQVEELRVSLA 775
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLERLRREREKAE-RYQALLKEKR--EYEGYELLKEKEALERQKEAIERQLASLEEELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 776 ---TEKQERASYERSTDTRLADLQNNVSFLREECRSRKKEFEEELdravnaQVEIFILQKFIEDLEQKNFSLLIECQKYA 852
Cdd:TIGR02169 255 kltEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGEL------EAEIASLERSIAEKERELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 853 EASSFSEKLIAELESENLEQQMEAEFLVHEIDNFRGAICQVFKALQ-VEADCKTADQKIAKERIPVSRVLGEINELKCSL 931
Cdd:TIGR02169 329 AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEeVDKEFAETRDELKDYREKLEKLKREINELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 932 SSAEYETQRLVIENSVLLSLLGQFQSDGMKLESEKRDVEKDLETIVHHYGMLKKDRLELLEMNRQLKSELIDREQRELEL 1011
Cdd:TIGR02169 409 DRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKL 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1012 KAELqTEHLKFENLHESYMALHQDYSDALGKN-KSLHLKFSELKGeiciLEEENGAILEEAI--ALNNVSV--------- 1079
Cdd:TIGR02169 489 QREL-AEAEAQARASEERVRGGRAVEEVLKASiQGVHGTVAQLGS----VGERYATAIEVAAgnRLNNVVVeddavakea 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1080 ------------------------VYQSLGSEKA-------------EQAEAFAKNLNS---LQNINSGLKQKVE----T 1115
Cdd:TIGR02169 564 iellkrrkagratflplnkmrderRDLSILSEDGvigfavdlvefdpKYEPAFKYVFGDtlvVEDIEAARRLMGKyrmvT 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1116 LE-EIL-------------KGKEVDSQELNSKLEKLQESLEE-ANELNDLLEHQILVKEET--LRQKA------IELLEA 1172
Cdd:TIGR02169 644 LEgELFeksgamtggsrapRGGILFSRSEPAELQRLRERLEGlKRELSSLQSELRRIENRLdeLSQELsdasrkIGEIEK 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1173 E-EMLKATHNANAELCEAVEElrkdckESRKLKGNLEKRNSELCDLAGRQDEEIKILSNLKENLES-EVKLLHKEIQEHR 1250
Cdd:TIGR02169 724 EiEQLEQEEEKLKERLEELEE------DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDlEARLSHSRIPEIQ 797
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1251 VREEFLSSELQEksnefglWDAEATSFYFDLQISAVREVLLENKVQELTGVCENLKDEAVTKTTEINQIKETVGFLEFEV 1330
Cdd:TIGR02169 798 AELSKLEEEVSR-------IEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
|
730 740
....*....|....*....|....*
gi 9279697 1331 SELKTQLSAYDPVVASLAEDVRSLE 1355
Cdd:TIGR02169 871 EELEAALRDLESRLGDLKKERDELE 895
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
257-430 |
8.29e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 8.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 257 QEDVKGLTNRATKAETEVENLKQAHSRLHSEKEAglaeYNRCLEMISNlEKKVRDAEENAQNFSNQSAKAE---DEIKAL 333
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREA----LQRLAEYSWD-EIDVASAEREIAELEAELERLDassDDLAAL 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 334 RHELVKVNEVKDGLRLRYQQCLETISKLEREVSHAQDNAKRLsSEVLAGAAKLKTVEDQcTLLESSNETLKLEA------ 407
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDEL-QDRLEAAEDLARLELR-ALLEERFAAALGDAverelr 768
|
170 180
....*....|....*....|...
gi 9279697 408 DGLTHKLAAKDQEIFQKQNELEK 430
Cdd:COG4913 769 ENLEERIDALRARLNRAEEELER 791
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
148-749 |
9.16e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 9.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 148 LSQLTEYLGNSETEVESLKRTLVELGAEKEALNLQYQLSLNKFSRLEKDLEVAQKDVSGLDERASKAEIETKILAEALAK 227
Cdd:TIGR04523 42 LKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNK 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 228 LEAErdaallrynesmqkITELEESFSHAQEDVKGLTNRATKAETEVENLKQAHSRLHSEKEAGLAEYNRCLEMISNLEK 307
Cdd:TIGR04523 122 LEVE--------------LNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 308 KVRDA--EENAQNFSNQSAKAEDE-IKALRHELVKVNEVKDGLRLRYQQCLETISKLEREVSHAQDNAKRLSS------- 377
Cdd:TIGR04523 188 NIDKIknKLLKLELLLSNLKKKIQkNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDeqnkikk 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 378 -------EVLAGAAKLKTVEDQCTLLESSNETLKLEADGLTHK-----LAAKDQEIFQKQNELEKFQSLIEDEHSRYLEI 445
Cdd:TIGR04523 268 qlsekqkELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKelkseLKNQEKKLEEIQNQISQNNKIISQLNEQISQL 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 446 EVSLKTLQSLYSQSQEEQ-------KVITSELQSRIGMLRDLETRNLKLEGDISSVKEENQNLSELNDSSMIFLETQKCE 518
Cdd:TIGR04523 348 KKELTNSESENSEKQRELeekqneiEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 519 ISSLKEIKEKLEEEVARHINQSSAFQEEIRRLKDEIDSLNKRYQAIMEQVNLAGLDPKSLacsVRKLQDENSKLTELCNH 598
Cdd:TIGR04523 428 IERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQK---QKELKSKEKELKKLNEE 504
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 599 QSDDKDALTEKLRELDNILRKNVCLEKLLLESNTKLDGSREKTKDL----------------QERCESLRGEKYEFIAER 662
Cdd:TIGR04523 505 KKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDdfelkkenlekeidekNKEIEELKQTQKSLKKKQ 584
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 663 ANLLSQLQIMTENMQKLLEKNSLLETSLSGANIELQCVKEKSKCFEEFFQLLKNDKAELIKERESLISQLNAVKEKLGVL 742
Cdd:TIGR04523 585 EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEI 664
|
....*..
gi 9279697 743 EKKFTEL 749
Cdd:TIGR04523 665 IKKIKES 671
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
604-1262 |
9.32e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 9.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 604 DALTEKLRELDNILR-KNVCLEKLLLESNTKldgsrEKTKDLQERCESLRG-----EKYEFIAERANLLSQLQIMTENMQ 677
Cdd:TIGR02169 180 EEVEENIERLDLIIDeKRQQLERLRREREKA-----ERYQALLKEKREYEGyellkEKEALERQKEAIERQLASLEEELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 678 KLLEKNSLLETSLSGANIELQCVKEKSKcfeeffQLLKNDKAELIKERESLISQLNAVKEKLGVLEKKFTELEGKYADLQ 757
Cdd:TIGR02169 255 KLTEEISELEKRLEEIEQLLEELNKKIK------DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 758 REKQFKNLQVEELRVSLATEKQERASYErstdTRLADLQNNVSFLREECRSRKKEFEEELDRAVNAQVEIFILQKFIEDL 837
Cdd:TIGR02169 329 AEIDKLLAEIEELEREIEEERKRRDKLT----EEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 838 EQKNFSLLIECQKYAEASSFSEKLIAELESENLEQQMEAEFLVHEIDNFRGaicqvfKALQVEADCKTADQKIAKERIPV 917
Cdd:TIGR02169 405 KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW------KLEQLAADLSKYEQELYDLKEEY 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 918 SRVLGEINELKCSLSSAE------------YETQRLVIENSV-----LLSLLGQFQSD---------GMKLESEKRDVEK 971
Cdd:TIGR02169 479 DRVEKELSKLQRELAEAEaqaraseervrgGRAVEEVLKASIqgvhgTVAQLGSVGERyataievaaGNRLNNVVVEDDA 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 972 DLETIVHHYGMLKKDRLELLEMNRQLKSE-----------------LIDREQRELELKAELQTEHLKFENL--------- 1025
Cdd:TIGR02169 559 VAKEAIELLKRRKAGRATFLPLNKMRDERrdlsilsedgvigfavdLVEFDPKYEPAFKYVFGDTLVVEDIeaarrlmgk 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1026 --------------------HESYMALHQDYSDALGKNKSLHLKFSELKGEICILEEENGAILEEAIALNNVSVVYQSLG 1085
Cdd:TIGR02169 639 yrmvtlegelfeksgamtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1086 SEKAEQAEAFAKNLNSLQNINSGLKQKVETLEEILKGKEVDSQELNSKLEKLQESL----EEANELNDLLEHQIL----- 1156
Cdd:TIGR02169 719 GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLhkleEALNDLEARLSHSRIpeiqa 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1157 ----VKEETLRQKAIeLLEAEEMLKATHNANAELCEAVEELRKDCKESRKLKGNLEKRNSELCDLAGRQDEEIKILSNLK 1232
Cdd:TIGR02169 799 elskLEEEVSRIEAR-LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL 877
|
730 740 750
....*....|....*....|....*....|
gi 9279697 1233 ENLESEVKLLHKEIQEHRVREEFLSSELQE 1262
Cdd:TIGR02169 878 RDLESRLGDLKKERDELEAQLRELERKIEE 907
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
141-332 |
9.55e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 9.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 141 SATSKRGLSQLTEYLGNSETEVESLKRTLVELGAEKEALNLQYQLSLNKFSRLEKDLEVAQKDVSGLDERASKAEIETKI 220
Cdd:COG3883 11 PAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 221 LAEALAK-----------LEAERDAALLRYNESMQKITELE-ESFSHAQEDVKGLTNRATKAETEVENLKQAHSRLHSEK 288
Cdd:COG3883 91 RARALYRsggsvsyldvlLGSESFSDFLDRLSALSKIADADaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 9279697 289 EAGLAEYNRCLEMISNLEKKVRDAEENAQNFSNQSAKAEDEIKA 332
Cdd:COG3883 171 AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
191-378 |
1.42e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 191 SRLEKDLEVAQKDVSGLDE-RASKAEIETkiLAEALAKLEAERDAalLRYNESMQKITELEESFSHAQEDVKGLTNRATK 269
Cdd:COG4913 238 ERAHEALEDAREQIELLEPiRELAERYAA--ARERLAELEYLRAA--LRLWFAQRRLELLEAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 270 AETEVENLKQAHSRLHSEK-EAGLAEYNRCLEMISNLEKKVRDAEENAQNFSNQSAKA-------EDEIKALRHElvkVN 341
Cdd:COG4913 314 LEARLDALREELDELEAQIrGNGGDRLEQLEREIERLERELEERERRRARLEALLAALglplpasAEEFAALRAE---AA 390
|
170 180 190
....*....|....*....|....*....|....*..
gi 9279697 342 EVKDGLRLRYQQCLETISKLEREVSHAQDNAKRLSSE 378
Cdd:COG4913 391 ALLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
583-824 |
1.51e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 583 RKLQDENSKLTelcnhqsddKDALTEKLRELDNILRKNVCLEKLllesNTKLDGSREKTKDLQERCESLRGEKYEFIAER 662
Cdd:PRK11281 51 QKLLEAEDKLV---------QQDLEQTLALLDKIDRQKEETEQL----KQQLAQAPAKLRQAQAELEALKDDNDEETRET 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 663 ANLLS--QLQimtenmQKLLEKNSLLETS---LSGAN---IELQCVKEK--------SKCFEEFFQLLKNDKAELIKERE 726
Cdd:PRK11281 118 LSTLSlrQLE------SRLAQTLDQLQNAqndLAEYNsqlVSLQTQPERaqaalyanSQRLQQIRNLLKGGKVGGKALRP 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 727 SLISQLNAvkeklgvlekkftelEGKYADLQREKQFKNLQ-------VEELRVSLATEKQERASYErstdtrLADLQNNV 799
Cdd:PRK11281 192 SQRVLLQA---------------EQALLNAQNDLQRKSLEgntqlqdLLQKQRDYLTARIQRLEHQ------LQLLQEAI 250
|
250 260
....*....|....*....|....*
gi 9279697 800 SflreecRSRKKEFEEELDRAVNAQ 824
Cdd:PRK11281 251 N------SKRLTLSEKTVQEAQSQD 269
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
136-343 |
1.67e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 136 FYDSDSATSKRGLSQLT---EYLGNSETEVESLKRTLVELGAEKEALNLQYQLSLNKFSRLEKDLEVAQKDVSGLDERAs 212
Cdd:COG4913 658 WDEIDVASAEREIAELEaelERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL- 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 213 kAEIETKILAEALAKLEAERDAALLRYNESmqkitELEESFshaQEDVKGLTNRATKAETEVENLKQAHSR----LHSEK 288
Cdd:COG4913 737 -EAAEDLARLELRALLEERFAAALGDAVER-----ELRENL---EERIDALRARLNRAEEELERAMRAFNRewpaETADL 807
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 9279697 289 EAGLAEYNRCLEMISNL--------EKKVRDAEENA--QNFSNQSAKAEDEIKALRHELVKVNEV 343
Cdd:COG4913 808 DADLESLPEYLALLDRLeedglpeyEERFKELLNENsiEFVADLLSKLRRAIREIKERIDPLNDS 872
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
946-1178 |
1.69e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 946 SVLLSLLGQFQSDGMK-LESEKRDVEKDLETIVHHYGMLKKDRLELLEMNRQLKSELIDREQRELELKAELQTEHLKFEN 1024
Cdd:COG4942 8 ALLLALAAAAQADAAAeAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1025 LHESYMALHQDYsDALGKNKSLHLKFSELKGEICILEEENGAilEEAIALNNVSVVYQSLGSEKAEQAEAFAKNLNSLQN 1104
Cdd:COG4942 88 LEKEIAELRAEL-EAQKEELAELLRALYRLGRQPPLALLLSP--EDFLDAVRRLQYLKYLAPARREQAEELRADLAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 9279697 1105 INSGLKQKVETLEEILKGKEVDSQELNSKLEKLQESLEEANELNDLLEHQI--LVKEETLRQKAIELLEAEEMLKA 1178
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELaeLQQEAEELEALIARLEAEAAAAA 240
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
148-760 |
1.80e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 148 LSQLTEYLGNSETEVESLKRTLVELGAEKEALNLQYQLSLNKFSRLEKDLEVAQKDVSGLDERASKAEIETKILAEALAK 227
Cdd:TIGR02169 415 LQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 228 LEAERDAALLRYNESMQKITELEESFSHAQEDVKGL---------------TNRATKAETEVENLKQAHSRLHSEKEAGL 292
Cdd:TIGR02169 495 AEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLgsvgeryataievaaGNRLNNVVVEDDAVAKEAIELLKRRKAGR 574
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 293 AEYNRCLEMISNLEKKVRDAEENAQNFSNQSAKAEDEIK-----ALRHELVkVNEVKDGLRLRYQQCLETISKLEREVSH 367
Cdd:TIGR02169 575 ATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEpafkyVFGDTLV-VEDIEAARRLMGKYRMVTLEGELFEKSG 653
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 368 A----QDNAKRLSSEVLAGAAKLKTVEDQCtllessnETLKLEADGLTHKLAAKDQEIFQKQNELEKFQSLIEDEHSRYL 443
Cdd:TIGR02169 654 AmtggSRAPRGGILFSRSEPAELQRLRERL-------EGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIE 726
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 444 EIEVSLKTLQSLYSQSQEEQKVITSELQSRIGMLRDLETRNLKLEGDISSVKEEnqnLSELNDSsmifletqkceisslk 523
Cdd:TIGR02169 727 QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEA---LNDLEAR---------------- 787
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 524 eikekleeeVARHINQSSafQEEIRRLKDEIDSLNKRYQAIMEQVNLAGLDPKSLACSVRKLQDENSKLTELCNHQSDDK 603
Cdd:TIGR02169 788 ---------LSHSRIPEI--QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 604 DALTEKLRELDNILRKnvcLEKLLLESNTKLDGSREKTKDLQERCESLRGEKYEFIAERANLLSQLQIMTENMQKLLEKN 683
Cdd:TIGR02169 857 ENLNGKKEELEEELEE---LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 684 SLLE------TSLSGANIELQCVKEKSKCFEEFFQLLKNDKAELIKERESLISQLNAVKEKLGVLEKKFTELEGKYADLQ 757
Cdd:TIGR02169 934 SEIEdpkgedEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013
|
...
gi 9279697 758 REK 760
Cdd:TIGR02169 1014 KKK 1016
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
1101-1191 |
1.91e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 42.92 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1101 SLQNINSGLKQKVETL-EEILKGKE--VDSQELNSKLEKLQESLEEANELNDLLEHQILVK-EETLRQKAIELLEAEEML 1176
Cdd:PLN03229 639 AEQTPPPNLQEKIESLnEEINKKIErvIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEAlEQQIKQKIAEALNSSELK 718
|
90
....*....|....*
gi 9279697 1177 KATHNANAELCEAVE 1191
Cdd:PLN03229 719 EKFEELEAELAAARE 733
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
152-1024 |
2.03e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 152 TEYLGNSETEVESLKRTLVELGAEKEALNLQYQLSLNKFSRLE-KDLEVAQKDVSGLDERASKAEIETKILAEALAKLEA 230
Cdd:TIGR00606 247 LDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELElKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQR 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 231 ERDAALLRYNESMQKITELEESFSHAQEDVKGLTNRATKAETEVENLkQAHSRLHSEKEAGLAEynrcLEMISNLEKKVR 310
Cdd:TIGR00606 327 ELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSL-ATRLELDGFERGPFSE----RQIKNFHTLVIE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 311 DAEENAQNFSNQSAKAEDEIKALRHELVKVNEVKDGLRLRYQQCLETISKLEREVSHAQDNAKRLSsevlagAAKLKTVE 390
Cdd:TIGR00606 402 RQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLE------GSSDRILE 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 391 DQCTLLESSNETLKLEADGLTHKLAAKDQEIFQKQNELEKFQSLIEDEHSRYLEIEVSLKTLQSL----YSQSQEEQKVI 466
Cdd:TIGR00606 476 LDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLtkdkMDKDEQIRKIK 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 467 TSELQSRIGMLRDLETRNLKLEGDISSVKEENQNLSELND--SSMIFLETQKCEISSLKEIKEKLEEEVARHINQ---SS 541
Cdd:TIGR00606 556 SRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKlnKELASLEQNKNHINNELESKEEQLSSYEDKLFDvcgSQ 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 542 AFQEEIRRLKDEIDSLNKRYQAIMEQVNLagldpksLACSVRKLQDENSKLTELCNHQSDDKDALTEKLRELDNILRKNV 621
Cdd:TIGR00606 636 DEESDLERLKEEIEKSSKQRAMLAGATAV-------YSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAP 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 622 CLEKLLLESNTKLDGSREKTKDLQERCESLRGEKYEFIAEranLLSQLQIMTENMQKLLEKNSLLETSLSGANIELQCVK 701
Cdd:TIGR00606 709 DKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPE---LRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAK 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 702 E---KSKCFEEFFQLLKNDKaeliKERESLISQLNAVKeklgvLEKKFTELEGKYADLQREKQFKNLQVEELRvSLATEK 778
Cdd:TIGR00606 786 VcltDVTIMERFQMELKDVE----RKIAQQAAKLQGSD-----LDRTVQQVNQEKQEKQHELDTVVSKIELNR-KLIQDQ 855
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 779 QERASYERSTDTRLADLQNNVSflreECRSRKKEFEEELDRAVNAqveifiLQKFIEDLEQKNFSLLIECQKYAEASSFS 858
Cdd:TIGR00606 856 QEQIQHLKSKTNELKSEKLQIG----TNLQRRQQFEEQLVELSTE------VQSLIREIKDAKEQDSPLETFLEKDQQEK 925
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 859 EKLIAELESENLEQQMEAEFLVHEIDNFRGAICQVFKALQVEADcktaDQKIAKERipvsrvlgEINELKCSLSSAEYET 938
Cdd:TIGR00606 926 EELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKD----DYLKQKET--------ELNTVNAQLEECEKHQ 993
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 939 QRLviensvllsllgqfqSDGMKLESEKRDVEKDLETIVHHYGMLKKDRLELLEMNRQLKSELIDREQRELelkAELQTE 1018
Cdd:TIGR00606 994 EKI---------------NEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQV---LQMKQE 1055
|
....*.
gi 9279697 1019 HLKFEN 1024
Cdd:TIGR00606 1056 HQKLEE 1061
|
|
| PRK11824 |
PRK11824 |
polynucleotide phosphorylase/polyadenylase; Provisional |
1166-1295 |
2.04e-03 |
|
polynucleotide phosphorylase/polyadenylase; Provisional
Pssm-ID: 236995 [Multi-domain] Cd Length: 693 Bit Score: 42.73 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1166 AIELLEaEEMLKAT---HNANAELCEAVEELRKDCKESRKLKgnLEKRNSELCD-LAGRQDEEIKILSNLKENLESEVKL 1241
Cdd:PRK11824 193 AKELSE-EVMLEAIefgHEAIQELIDAQEELAAEAGPKWEWQ--PPEVDEELKAaVKELAEAKLKEAYQITDKQEREAAL 269
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 9279697 1242 lhKEIQEhRVREEFLSSElqeksnEFGLWDAEATSFYFDLQISAVREVLLENKV 1295
Cdd:PRK11824 270 --DAIKE-EVLEALAAEE------EEEEDEKEIKEAFKKLEKKIVRRRILEEGI 314
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
160-344 |
2.17e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 160 TEVESLKRTLVELGAEKEalnlQYQLSLNKFSRLEKDLEVAQKDVSGLDERASKAEIETKI--LAEALAKLEAERDAALL 237
Cdd:COG4717 71 KELKELEEELKEAEEKEE----EYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlpLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 238 RYNESMQKITELEEsfshAQEDVKGLTNRATKAETEVENLKQAHSrlhsekEAGLAEYNRCLEMISNLEKKVRDAEENAQ 317
Cdd:COG4717 147 RLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLS------LATEEELQDLAEELEELQQRLAELEEELE 216
|
170 180
....*....|....*....|....*..
gi 9279697 318 NFSNQSAKAEDEIKALRHELVKVNEVK 344
Cdd:COG4717 217 EAQEELEELEEELEQLENELEAAALEE 243
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
138-444 |
2.77e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 138 DSDSATSKRGLSQLTEYLGNSETEVESLKRTLVELGAEKEalnlQYQLSLNKFSRLEKDLE--VAQKDVSGLDERASKAE 215
Cdd:TIGR02169 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIE----ELEEDLHKLEEALNDLEarLSHSRIPEIQAELSKLE 804
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 216 IETKILAEALAKLEAErdaallrYNESMQKITELEESFSHAQEDVKGLTNRATKAETEVENLKQAHSRLHSEKEAGLAEY 295
Cdd:TIGR02169 805 EEVSRIEARLREIEQK-------LNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL 877
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 296 NRCLEMISNLEKKVRDAEEnaqnfsnqsakaedEIKALRHELVKVNEVKDGLRLRYQQCLETISKLEREVSHAQDNAKRL 375
Cdd:TIGR02169 878 RDLESRLGDLKKERDELEA--------------QLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 376 SSEVlAGAAKLKTVEDQCTLLESsnetlKLEADGLTHKLAAKDQEIFQK-QNELEKFQSLIEDEHSRYLE 444
Cdd:TIGR02169 944 EEIP-EEELSLEDVQAELQRVEE-----EIRALEPVNMLAIQEYEEVLKrLDELKEKRAKLEEERKAILE 1007
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
176-657 |
3.46e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 3.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 176 KEALNLQYQLSLNKFSRLEKDLEVAQKdvsgLDERASKAEIETKILAEALAKLEAERDAALLRYNESMQKITELEESFSH 255
Cdd:PTZ00121 1290 KKADEAKKAEEKKKADEAKKKAEEAKK----ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 256 AQEDVKGLTNRATKAETEVENLKQAHSRLHSEKEAglAEYNRCLEMISNLEKKVRDAEENAQNfsNQSAKAEDEIKALRH 335
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA--EEDKKKADELKKAAAAKKKADEAKKK--AEEKKKADEAKKKAE 1441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 336 ELVKVNEVKDglRLRYQQCLETISKLEREVSHAQDNAKRLSSEVLAGAAKLKTVEDQCTLLESSN-ETLKLEADGLTHKL 414
Cdd:PTZ00121 1442 EAKKADEAKK--KAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKaAEAKKKADEAKKAE 1519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 415 AAKDQEIFQKQNELEKFQSLIEDEHSRYLEievSLKTLQSLySQSQEEQKVitsELQSRIGMLRDLETRNLKLEGDISSV 494
Cdd:PTZ00121 1520 EAKKADEAKKAEEAKKADEAKKAEEKKKAD---ELKKAEEL-KKAEEKKKA---EEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 495 KEENQNLSELNDSSMIFLETQKCEISSLKEIKEKLEEEVARHINQSSAFQEEIRRLKDEIDSLNKRYQAIMEQVNLAGLD 574
Cdd:PTZ00121 1593 RIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 575 PKSLACSVRKLQDENSKLTELCNHQSDDKDALTEKLRELDNILRKNVCLEKLLLESNTKLDGSREKTKDLQERCESLRGE 654
Cdd:PTZ00121 1673 DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD 1752
|
...
gi 9279697 655 KYE 657
Cdd:PTZ00121 1753 EEE 1755
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
157-382 |
3.77e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 157 NSETEVESLKRTLVELGAEKEALNLQYQLSLNKFSRLEKDLEVAQKDVSGLDERASKAEIETKILAEALAKLEAERD--- 233
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEaqk 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 234 ---AALLRYNESMQKITELEESFShaQEDVKGLTNRATKAETEVENLKQAHSRLHSEKEAGLAEYNRCLEMISNLEKKVR 310
Cdd:COG4942 104 eelAELLRALYRLGRQPPLALLLS--PEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 9279697 311 DAEENAQNFSNQSAKAEDEIKALRHELVKVNEVKDGLRLRYQQCLETISKLEREVSHAQDNAKRLSSEVLAG 382
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKG 253
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
160-335 |
3.92e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 3.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 160 TEVESLKRTLVELGAEKEALNLqYQLSLnKFSRLEKDLEVAQKDVSGLDERASKAEIETKILAEALAKLEAERDAAllry 239
Cdd:COG4913 262 ERYAAARERLAELEYLRAALRL-WFAQR-RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGN---- 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 240 neSMQKITELEESFSHAQEDVKGLTNRATKAETEVENLKQAHSRLHSEKEAGLAEYNRCLEMISNLEKKVRD----AEEN 315
Cdd:COG4913 336 --GGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEalaeAEAA 413
|
170 180
....*....|....*....|
gi 9279697 316 AQNFSNQSAKAEDEIKALRH 335
Cdd:COG4913 414 LRDLRRELRELEAEIASLER 433
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
188-427 |
4.04e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 188 NKFSRLEKDLEVAQKDVSGLDERASKAEIETKILAEALAKLEAERDAALlrynesmQKITELEESFSHAQEDVKGLTNRA 267
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA-------RRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 268 TKAETEVENLKQAhsrlhsekeagLAEYNRCLEMISNLE--------KKVRDAEENAQNFSNQSAKAEDEIKALRHELVK 339
Cdd:COG4942 93 AELRAELEAQKEE-----------LAELLRALYRLGRQPplalllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 340 VNEVKDGLRLRYQQCLETISKLEREvshaqdnAKRLSSEVLAGAAKLKTVEDQCTLLESSNETLKLEADGLTHKLAAKDQ 419
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEE-------RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
....*...
gi 9279697 420 EIFQKQNE 427
Cdd:COG4942 235 EAAAAAER 242
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
804-1267 |
5.31e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 5.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 804 EECRSRKKEFEEELDRAVNaqvEIFILQKFIEDLEQKNFSLLIECQKYAEASSfsekLIAELESENLEQQMEAEFLVHEI 883
Cdd:PRK03918 189 ENIEELIKEKEKELEEVLR---EINEISSELPELREELEKLEKEVKELEELKE----EIEELEKELESLEGSKRKLEEKI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 884 DNFRGAICQVFKALQVEADCKTADQKIAKERIPVSRVLGEINELKCSLSSAEYETQRLVIENSVLLSLLgqfqSDGMKLE 963
Cdd:PRK03918 262 RELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI----KELEEKE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 964 SEKRDVEKDLETIVHHYGMLKKdRLELLEMNRQLKSELIDREQREL-----ELKAELQTEHLKFENLHESYMALHQDYSD 1038
Cdd:PRK03918 338 ERLEELKKKLKELEKRLEELEE-RHELYEEAKAKKEELERLKKRLTgltpeKLEKELEELEKAKEEIEEEISKITARIGE 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1039 ALGKNKSLHLKFSELKG--EIC------ILEEENGAILEEAIA-LNNVSVVYQSLGsEKAEQAEAFAKNLNSLQNINSGL 1109
Cdd:PRK03918 417 LKKEIKELKKAIEELKKakGKCpvcgreLTEEHRKELLEEYTAeLKRIEKELKEIE-EKERKLRKELRELEKVLKKESEL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1110 KQKVETLEEILKGKEVDSQELNSKLEKLQESLEEANELNDLLEHQILVKEETLRQKAIELLEAEEMLKATHNANAELCEA 1189
Cdd:PRK03918 496 IKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAEL 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1190 VEELR----KDCKESRKLKGNLEKRNSELCDLAGRQDEeIKILSNLKENLESEVKLLHKEIQEHRVREEFLSSELQEKSN 1265
Cdd:PRK03918 576 LKELEelgfESVEELEERLKELEPFYNEYLELKDAEKE-LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK 654
|
..
gi 9279697 1266 EF 1267
Cdd:PRK03918 655 KY 656
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
961-1361 |
5.35e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 5.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 961 KLESEKRDVEKDLETIVHHYGMLKKDRLELLEMNRQLKSELIDREQRELELKAELQTEHLKFENLHESYMALHQDYSDAL 1040
Cdd:TIGR04523 128 KLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLK 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1041 GKNKslhlKFSELKGEICILEEENGAILEEAIALNNVSVVYQSLGSEKAEQAEAFaknLNSLQNINSGLKQK---VETLE 1117
Cdd:TIGR04523 208 KKIQ----KNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQL---KDEQNKIKKQLSEKqkeLEQNN 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1118 EILKGKEVDSQELNSKLEKLQEslEEANELNDLLEHQILVKEETLRQKAIELLEAEEMLkathnanAELCEAVEELRKDC 1197
Cdd:TIGR04523 281 KKIKELEKQLNQLKSEISDLNN--QKEQDWNKELKSELKNQEKKLEEIQNQISQNNKII-------SQLNEQISQLKKEL 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1198 KESR----KLKGNLEKRNSELCDLAGRQD---EEIKILSNLKENLESEVKLLHKEIQEHRVREEFLSSELQEKSNEFGLW 1270
Cdd:TIGR04523 352 TNSEsensEKQRELEEKQNEIEKLKKENQsykQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERL 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1271 DAEATSFYFDLQISAVREVLLENKVQELTGVCENLKDEAVTKTTEINQIKETVGFLEFEVSELKTQLSAYDPVVASLAED 1350
Cdd:TIGR04523 432 KETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEK 511
|
410
....*....|.
gi 9279697 1351 VRSLEQNALSL 1361
Cdd:TIGR04523 512 VKDLTKKISSL 522
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1110-1356 |
6.24e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 6.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1110 KQKVETLEEILkgkevdsQELNSKLEKLQESLEEANElndllEHQILVKEETLRQKAIELLEAEEMLKATHNANAELCEA 1189
Cdd:COG4913 609 RAKLAALEAEL-------AELEEELAEAEERLEALEA-----ELDALQERREALQRLAEYSWDEIDVASAEREIAELEAE 676
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1190 VEELRKDCKESRKLKGNLEKRNSELCDLAGRQDEeikilsnlkenLESEVKLLHKEIQEHRVREEflssELQEKSNEFGL 1269
Cdd:COG4913 677 LERLDASSDDLAALEEQLEELEAELEELEEELDE-----------LKGEIGRLEKELEQAEEELD----ELQDRLEAAED 741
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1270 WDAEATSFYFDLQisaVREVLLENKVQELTgvcENLKDEAVTKTTEINQIKETVgflefeVSELKTQLSAYDPVVASLAE 1349
Cdd:COG4913 742 LARLELRALLEER---FAAALGDAVERELR---ENLEERIDALRARLNRAEEEL------ERAMRAFNREWPAETADLDA 809
|
....*..
gi 9279697 1350 DVRSLEQ 1356
Cdd:COG4913 810 DLESLPE 816
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
731-1179 |
6.29e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 6.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 731 QLNAVKEKLGVLEKKFTELEGKYADLQRE----KQFKNLQvEELRVslaTEKQERASYERSTDTRLADLQNNVSFLREEC 806
Cdd:COG1196 180 KLEATEENLERLEDILGELERQLEPLERQaekaERYRELK-EELKE---LEAELLLLKLRELEAELEELEAELEELEAEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 807 RSRKKEFEEELDRAVNAQVEIFILQKFIEDLEQKNFSLLIECQKYAEASSFSEKLIAELESENLEQQMEAEflvheidnf 886
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA--------- 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 887 rgaicqvfkalQVEADCKTADQKIAKERIPVSRVLGEINELKCSLSSAEYETQRLVIENSVLLSLLGQFQSDGMKLESEK 966
Cdd:COG1196 327 -----------ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 967 RDVEKDLEtivhhygmlkkdrlELLEMNRQLKSELIDREQRELELKAELQTEHLKFENLHESYMALHQDYSDALGKNKSL 1046
Cdd:COG1196 396 AELAAQLE--------------ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1047 HLKFSELKGEICILEEENGAILEEAIALNNVsvvyQSLGSEKAEQAEAFAKNLNSLQNINSGLKQKVETLEEILKGKEVd 1126
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAAR----LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAY- 536
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 9279697 1127 sqelnsklEKLQESLEEAnelndlLEHQILVKEETLRQKAIELLEAEEMLKAT 1179
Cdd:COG1196 537 --------EAALEAALAA------ALQNIVVEDDEVAAAAIEYLKAAKAGRAT 575
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
972-1170 |
6.91e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.43 E-value: 6.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 972 DLETIVHHYGMLKKdRLELLEMN---RQLKSELIDREQRELELKAElQTEHLKFENLHESYM------ALHQDYSDALGK 1042
Cdd:PLN02939 157 DLEKILTEKEALQG-KINILEMRlseTDARIKLAAQEKIHVEILEE-QLEKLRNELLIRGATeglcvhSLSKELDVLKEE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1043 NKSLHLKFSELKGEICILEE--ENGAILEEAIALNNVSVvyQSLGSEKAEQAEAFAKnLNSLQNinSGLKQKVETLEEIL 1120
Cdd:PLN02939 235 NMLLKDDIQFLKAELIEVAEteERVFKLEKERSLLDASL--RELESKFIVAQEDVSK-LSPLQY--DCWWEKVENLQDLL 309
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 9279697 1121 K--GKEVD--------SQELNSKLEKLQESLEEAN------ELNDLLEHQILVKEETLRQKAIELL 1170
Cdd:PLN02939 310 DraTNQVEkaalvldqNQDLRDKVDKLEASLKEANvskfssYKVELLQQKLKLLEERLQASDHEIH 375
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
983-1202 |
7.59e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 7.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 983 LKKDRLELLEMNRQLKSELIDREQRELELKAELQTEHLKFENLHESYMALHQDYSDALGKNKSLHLKFSELKGEICILEE 1062
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1063 ENGAILEEAIALNNVSVVYQSLGSEKAEQAEAFAKNLNSL----QNINSGLKQKVETLEEIlkgkevdSQELNSKLEKLQ 1138
Cdd:COG4942 105 ELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLaparREQAEELRADLAELAAL-------RAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 9279697 1139 ESLEEANELNDLLEHQILVKEETLRQKAIELLEAEEMLKATHNANAELCEAVEELRKDCKESRK 1202
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
681-1266 |
9.58e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.80 E-value: 9.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 681 EKNSLLETSLSGANIELQCVKEKSKCFEEFFQLLKNDkaelIKERESLISQLNAVKEKLGVLEKKftelegkyaDLQREK 760
Cdd:TIGR00606 217 EKACEIRDQITSKEAQLESSREIVKSYENELDPLKNR----LKEIEHNLSKIMKLDNEIKALKSR---------KKQMEK 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 761 QFKNLQVEELRVSLATEKQERASYE------RSTDTRLADLQNNVSFLREECRSRKKEFEEELDRAVNAQVEIFILQKFI 834
Cdd:TIGR00606 284 DNSELELKMEKVFQGTDEQLNDLYHnhqrtvREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHI 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 835 edleQKNFSLLIECQKYAEASSFSEKLIAELESENleqqmeaeFLVHEIDNFRGAICQVFKALQVEADCKTADQKIAKER 914
Cdd:TIGR00606 364 ----RARDSLIQSLATRLELDGFERGPFSERQIKN--------FHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEI 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 915 IPVSRVLGEINELKCSLSSAEYETQRLVIENsvlLSLLGQFQSDGMKLESEKRDVEKDLETIVHHYGMLKKDRLELLEMN 994
Cdd:TIGR00606 432 RDEKKGLGRTIELKKEILEKKQEELKFVIKE---LQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQN 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 995 RQLKselIDREQRELELKAELQTEHLKFENLHESYMALHQDYSDALGKNKSLHLkfSELKGEICILEeeNGAILEEAial 1074
Cdd:TIGR00606 509 EKAD---LDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHS--DELTSLLGYFP--NKKQLEDW--- 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1075 nnvsvvYQSLGSEKAEQAEAFAK---NLNSLQNINSGLKQKVETLEEILKGKE------VDSQELNSKLEKLQESLEEAN 1145
Cdd:TIGR00606 579 ------LHSKSKEINQTRDRLAKlnkELASLEQNKNHINNELESKEEQLSSYEdklfdvCGSQDEESDLERLKEEIEKSS 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9279697 1146 ELNDLLEHQILVKEETLRQKAIELLEAEEMLKATHNANAELCEAVEELRKdckESRKLKGNLEKRNSELCDLAGRQDEEI 1225
Cdd:TIGR00606 653 KQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQS---KLRLAPDKLKSTESELKKKEKRRDEML 729
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 9279697 1226 kilsNLKENLESEVKLLHKEIQEHRVREEFLSSELQEKSNE 1266
Cdd:TIGR00606 730 ----GLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKND 766
|
|
| |
