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Conserved domains on  [gi|8843759|dbj|BAA97307|]
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unnamed protein product [Arabidopsis thaliana]

Protein Classification

mTERF domain-containing protein( domain architecture ID 139977)

mTERF (mitochondrial transcription termination factor) domain-containing protein may function as a transcription termination factor that binds promoter DNA and regulates mitochondrial replication and transcription

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
mTERF super family cl47744
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 75-326 1.35e-28

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


The actual alignment was detected with superfamily member pfam02536:

Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 113.47  E-value: 1.35e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8843759     75 IQMLKSYSFSDTQIQKSIRVHPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPTVEILKSIV 154
Cdd:pfam02536   1 LSLLESLGVTDSQISKILTRYPPVLHADVEKDLAPKLQFLLSLGASSSDLGKILSKYPRILGFKLEETMSTSVDFLKEIG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8843759    155 APKhEDLPVILSRCGWLLLSRDPNLfLLPNISYLETCGIVGSQLASLLRRQPRI-----------------------FNL 211
Cdd:pfam02536  81 VDK-SSIGGALRSWPSILGMRVGNN-IKNNVEYLRELGVPQKLLARLLISRPQLlaldlvylmkpktfeekveflkeLGF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8843759    212 SEEKLRGYVSR-----ALDLGFTLN-----------SRMLVHAVIS----LSSLSEKTFDRKVKLFMANGFSEDEITDII 271
Cdd:pfam02536 159 SVEDVWKIIKKcpeilGLSIEKKLKkkieflkkcglSEEELPRVIKkypqILSLSERTILNRVEFLLGLGFSKEEVAKMV 238

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 8843759    272 RRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQ 326
Cdd:pfam02536 239 KRFPQLLGLSIEVLKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPRIKALV 293
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 75-326 1.35e-28

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 113.47  E-value: 1.35e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8843759     75 IQMLKSYSFSDTQIQKSIRVHPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPTVEILKSIV 154
Cdd:pfam02536   1 LSLLESLGVTDSQISKILTRYPPVLHADVEKDLAPKLQFLLSLGASSSDLGKILSKYPRILGFKLEETMSTSVDFLKEIG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8843759    155 APKhEDLPVILSRCGWLLLSRDPNLfLLPNISYLETCGIVGSQLASLLRRQPRI-----------------------FNL 211
Cdd:pfam02536  81 VDK-SSIGGALRSWPSILGMRVGNN-IKNNVEYLRELGVPQKLLARLLISRPQLlaldlvylmkpktfeekveflkeLGF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8843759    212 SEEKLRGYVSR-----ALDLGFTLN-----------SRMLVHAVIS----LSSLSEKTFDRKVKLFMANGFSEDEITDII 271
Cdd:pfam02536 159 SVEDVWKIIKKcpeilGLSIEKKLKkkieflkkcglSEEELPRVIKkypqILSLSERTILNRVEFLLGLGFSKEEVAKMV 238

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 8843759    272 RRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQ 326
Cdd:pfam02536 239 KRFPQLLGLSIEVLKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPRIKALV 293
PLN03196 PLN03196
MOC1-like protein; Provisional
 92-326 3.41e-10

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 61.26  E-value: 3.41e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8843759    92 IRVHPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPTVEILKSIVAPKHeDLPVILSRCGWL 171
Cdd:PLN03196 109 INEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQ-DIPRVLERYPEL 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8843759   172 L----------------------------LSRDPNLF-------LLPNISYLETCGIVGSQLASLLRRQPRI-------- 208
Cdd:PLN03196 188 LgfklegtmstsvaylvsigvaprdigpmLTRFPEILgmrvgnnIKPKVDYLESLGLPRLAVARILEKRPYIlgfdleet 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8843759   209 ----------FNLSEEKLRGYVSR-----ALDLGFTLNSRM-LVHAVISLS---------------SLSEKTFDRKVKLF 257
Cdd:PLN03196 268 vkpnveclleFGVRKEALPSVIAQypdilGLDLKAKLAEQQyWLTSKLKIDpedfgrvieklpqivSLNRNVALKHVEFL 347

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 8843759   258 MANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQ 326
Cdd:PLN03196 348 RGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVA 416
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 75-326 1.35e-28

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 113.47  E-value: 1.35e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8843759     75 IQMLKSYSFSDTQIQKSIRVHPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPTVEILKSIV 154
Cdd:pfam02536   1 LSLLESLGVTDSQISKILTRYPPVLHADVEKDLAPKLQFLLSLGASSSDLGKILSKYPRILGFKLEETMSTSVDFLKEIG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8843759    155 APKhEDLPVILSRCGWLLLSRDPNLfLLPNISYLETCGIVGSQLASLLRRQPRI-----------------------FNL 211
Cdd:pfam02536  81 VDK-SSIGGALRSWPSILGMRVGNN-IKNNVEYLRELGVPQKLLARLLISRPQLlaldlvylmkpktfeekveflkeLGF 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8843759    212 SEEKLRGYVSR-----ALDLGFTLN-----------SRMLVHAVIS----LSSLSEKTFDRKVKLFMANGFSEDEITDII 271
Cdd:pfam02536 159 SVEDVWKIIKKcpeilGLSIEKKLKkkieflkkcglSEEELPRVIKkypqILSLSERTILNRVEFLLGLGFSKEEVAKMV 238

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 8843759    272 RRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQ 326
Cdd:pfam02536 239 KRFPQLLGLSIEVLKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPRIKALV 293
PLN03196 PLN03196
MOC1-like protein; Provisional
 92-326 3.41e-10

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 61.26  E-value: 3.41e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8843759    92 IRVHPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPTVEILKSIVAPKHeDLPVILSRCGWL 171
Cdd:PLN03196 109 INEYPLVLGCSVKKNMIPVLDYLEKLGVTRSSLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKRQ-DIPRVLERYPEL 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8843759   172 L----------------------------LSRDPNLF-------LLPNISYLETCGIVGSQLASLLRRQPRI-------- 208
Cdd:PLN03196 188 LgfklegtmstsvaylvsigvaprdigpmLTRFPEILgmrvgnnIKPKVDYLESLGLPRLAVARILEKRPYIlgfdleet 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8843759   209 ----------FNLSEEKLRGYVSR-----ALDLGFTLNSRM-LVHAVISLS---------------SLSEKTFDRKVKLF 257
Cdd:PLN03196 268 vkpnveclleFGVRKEALPSVIAQypdilGLDLKAKLAEQQyWLTSKLKIDpedfgrvieklpqivSLNRNVALKHVEFL 347

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 8843759   258 MANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLKVLQ 326
Cdd:PLN03196 348 RGRGFSAQDVAKMVVRCPQILALNLEIMKPSLEFFKKEMKRPLKELVEFPAYFTYGLESRIKPRYERVA 416
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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