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Conserved domains on  [gi|8843754|dbj|BAA97302|]
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unnamed protein product [Arabidopsis thaliana]

Protein Classification

elicitor peptide( domain architecture ID 13879175)

elicitor peptide is a DUF5306 domain-containing protein that acts as an elicitor of plant defense

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pep1_7 pfam17232
Elicitor peptide 1-7; This entry include a group of elicitor peptides from plants, including ...
 1-88 3.27e-16

Elicitor peptide 1-7; This entry include a group of elicitor peptides from plants, including Arabidopsis AtPEP1-7. AtPEP1 activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H(2)O(2), both being components of the innate immune response.


:

Pssm-ID: 407349  Cd Length: 82  Bit Score: 66.66  E-value: 3.27e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8843754     1 MEKSDRRSEE--SHLWIPLQCLDQTLRAILKCLGLfhqDSPTTSSPGTSKQPKEEkedvtmEKEEVVVTSRATKVK-AKQ 77
Cdd:pfam17232  1 MEEEGRREDEvsYYLWIPFQFIHQILRSFLKCLGL---ESSSSNSPSSSSEEDEE------ETETVEVTSRGVVVKvLKR 71

                         90
                 ....*....|.
gi 8843754    78 RGKEKVSSGRP 88
Cdd:pfam17232 72 RPKPPPSSGKP 82
 
Name Accession Description Interval E-value
Pep1_7 pfam17232
Elicitor peptide 1-7; This entry include a group of elicitor peptides from plants, including ...
 1-88 3.27e-16

Elicitor peptide 1-7; This entry include a group of elicitor peptides from plants, including Arabidopsis AtPEP1-7. AtPEP1 activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H(2)O(2), both being components of the innate immune response.


Pssm-ID: 407349  Cd Length: 82  Bit Score: 66.66  E-value: 3.27e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8843754     1 MEKSDRRSEE--SHLWIPLQCLDQTLRAILKCLGLfhqDSPTTSSPGTSKQPKEEkedvtmEKEEVVVTSRATKVK-AKQ 77
Cdd:pfam17232  1 MEEEGRREDEvsYYLWIPFQFIHQILRSFLKCLGL---ESSSSNSPSSSSEEDEE------ETETVEVTSRGVVVKvLKR 71

                         90
                 ....*....|.
gi 8843754    78 RGKEKVSSGRP 88
Cdd:pfam17232 72 RPKPPPSSGKP 82
 
Name Accession Description Interval E-value
Pep1_7 pfam17232
Elicitor peptide 1-7; This entry include a group of elicitor peptides from plants, including ...
 1-88 3.27e-16

Elicitor peptide 1-7; This entry include a group of elicitor peptides from plants, including Arabidopsis AtPEP1-7. AtPEP1 activates transcription of the defensive gene defensin (PDF1.2) and activates the synthesis of H(2)O(2), both being components of the innate immune response.


Pssm-ID: 407349  Cd Length: 82  Bit Score: 66.66  E-value: 3.27e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8843754     1 MEKSDRRSEE--SHLWIPLQCLDQTLRAILKCLGLfhqDSPTTSSPGTSKQPKEEkedvtmEKEEVVVTSRATKVK-AKQ 77
Cdd:pfam17232  1 MEEEGRREDEvsYYLWIPFQFIHQILRSFLKCLGL---ESSSSNSPSSSSEEDEE------ETETVEVTSRGVVVKvLKR 71

                         90
                 ....*....|.
gi 8843754    78 RGKEKVSSGRP 88
Cdd:pfam17232 72 RPKPPPSSGKP 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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