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Conserved domains on  [gi|2203519018|sp|B0BNF9|]
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RecName: Full=2-Hydroxyacid oxidase 1; Short=HAOX1; AltName: Full=Glycolate oxidase; Short=GOX; AltName: Full=Glyoxylate oxidase

Protein Classification

alpha-hydroxy acid oxidase( domain architecture ID 12014085)

FMN-dependent alpha-hydroxy acid oxidase catalyzes the oxidation of 2-hydroxy acids to produce 2-oxo acids

EC:  1.-.-.-
Gene Ontology:  GO:0010181|GO:0016491
PubMed:  11257493

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FMN_dh pfam01070
FMN-dependent dehydrogenase;
15-362 0e+00

FMN-dependent dehydrogenase;


:

Pssm-ID: 426029 [Multi-domain]  Cd Length: 350  Bit Score: 507.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  15 ARTVLQKSVYDYYKSGANDQETLADNIRAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELAT 94
Cdd:pfam01070   1 ARKRLPRFAFDYLDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSNRDLSTTLLGQRLSLPFGIAPVGMQGLAHPDGELAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  95 VRACQTMGTGMMLSSWATSSIEEVAEAGpEALRWMQLYIYKDREVSSQLVKRAEQMGYKAIFVTVDTPYLGNRFDDVRNR 174
Cdd:pfam01070  81 ARAAAAAGIPFVLSTVSSTSLEEVAAAA-GGPLWFQLYVPRDRELTEDLLERAEAAGYKALVLTVDTPVLGRRERDLRNG 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 175 FKLPPQLRMKNFEtnDLAFSPKGNF-----GDNSGLAEYVAQAIDPSLSWDDIKWLRRLTSLPIVVKGILRGDDAQEAVK 249
Cdd:pfam01070 160 FTLPPRLTPRNLL--DLALHPRWALgvlrrGGAGGAAAFVGSQFDPALTWDDLAWLRERWKGPLVVKGILSPEDAKRAVE 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 250 HGVDGILVSNHGARQLDGVPATIDALPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGARAVFVGRPIIWGLAFQGEKGV 329
Cdd:pfam01070 238 AGVDGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFLYGLAAGGEAGV 317
                         330       340       350
                  ....*....|....*....|....*....|...
gi 2203519018 330 QDVLEILKEEFRLAMALSGCQNVKVIDKTLVRK 362
Cdd:pfam01070 318 AHALEILRDELERTMALLGCKSIADLTPSLLRR 350
 
Name Accession Description Interval E-value
FMN_dh pfam01070
FMN-dependent dehydrogenase;
15-362 0e+00

FMN-dependent dehydrogenase;


Pssm-ID: 426029 [Multi-domain]  Cd Length: 350  Bit Score: 507.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  15 ARTVLQKSVYDYYKSGANDQETLADNIRAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELAT 94
Cdd:pfam01070   1 ARKRLPRFAFDYLDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSNRDLSTTLLGQRLSLPFGIAPVGMQGLAHPDGELAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  95 VRACQTMGTGMMLSSWATSSIEEVAEAGpEALRWMQLYIYKDREVSSQLVKRAEQMGYKAIFVTVDTPYLGNRFDDVRNR 174
Cdd:pfam01070  81 ARAAAAAGIPFVLSTVSSTSLEEVAAAA-GGPLWFQLYVPRDRELTEDLLERAEAAGYKALVLTVDTPVLGRRERDLRNG 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 175 FKLPPQLRMKNFEtnDLAFSPKGNF-----GDNSGLAEYVAQAIDPSLSWDDIKWLRRLTSLPIVVKGILRGDDAQEAVK 249
Cdd:pfam01070 160 FTLPPRLTPRNLL--DLALHPRWALgvlrrGGAGGAAAFVGSQFDPALTWDDLAWLRERWKGPLVVKGILSPEDAKRAVE 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 250 HGVDGILVSNHGARQLDGVPATIDALPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGARAVFVGRPIIWGLAFQGEKGV 329
Cdd:pfam01070 238 AGVDGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFLYGLAAGGEAGV 317
                         330       340       350
                  ....*....|....*....|....*....|...
gi 2203519018 330 QDVLEILKEEFRLAMALSGCQNVKVIDKTLVRK 362
Cdd:pfam01070 318 AHALEILRDELERTMALLGCKSIADLTPSLLRR 350
alpha_hydroxyacid_oxid_FMN cd02809
Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in ...
9-357 7.50e-169

Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.


Pssm-ID: 239203 [Multi-domain]  Cd Length: 299  Bit Score: 472.70  E-value: 7.50e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018   9 SDYEQHARTVLQKSVYDYYKSGANDQETLADNIRAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHV 88
Cdd:cd02809     1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  89 DGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPeALRWMQLYIYKDREVSSQLVKRAEQMGYKAIFVTVDTPYLGNRf 168
Cdd:cd02809    81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAP-GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR- 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 169 ddvrnrfklppqlrmknfetndlafspkgnfgdnsglaeyvaqaidpsLSWDDIKWLRRLTSLPIVVKGILRGDDAQEAV 248
Cdd:cd02809   159 ------------------------------------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAV 190
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 249 KHGVDGILVSNHGARQLDGVPATIDALPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGARAVFVGRPIIWGLAFQGEKG 328
Cdd:cd02809   191 DAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAG 270
                         330       340
                  ....*....|....*....|....*....
gi 2203519018 329 VQDVLEILKEEFRLAMALSGCQNVKVIDK 357
Cdd:cd02809   271 VAHVLEILRDELERAMALLGCASLADLDP 299
LldD COG1304
FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl ...
2-361 9.20e-165

FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase [Energy production and conversion, Lipid transport and metabolism, General function prediction only]; FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 440915 [Multi-domain]  Cd Length: 357  Bit Score: 464.61  E-value: 9.20e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018   2 LPRLVCISDYEQHARTVLQKSVYDYYKSGANDQETLADNIRAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATA 81
Cdd:COG1304     1 MSRILSIEDLRRIARRKLPRFAFDYIDGGAGDEVTLRRNRAAFDRVRLRPRVLEDVSEIDLSTTLLGKRLAAPFLIAPMG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  82 MQCMAHVDGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPeALRWMQLYIYKDREVSSQLVKRAEQMGYKAIFVTVDT 161
Cdd:COG1304    81 GGGLAHPDGELALARAAAAAGIPMGLSTQSTTSLEEVAAAAP-APLWFQLYVPKDRGFTDDLLRRAEAAGADALVLTVDT 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 162 PYLGNRFDDVRNRFKLPPQLRMKNFEtnDLAFSPKGNFGdNSGLAEYVAQAIDPSLSWDDIKWLRRLTSLPIVVKGILRG 241
Cdd:COG1304   160 PVLGRRERDLREGFSQPPRLTPRNLL--EAATHPRWALG-LASLAAWLDTNFDPSLTWDDIAWLRERWPGPLIVKGVLSP 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 242 DDAQEAVKHGVDGILVSNHGARQLDGVPATIDALPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGARAVFVGRPIIWGL 321
Cdd:COG1304   237 EDARRAVDAGVDGIDVSNHGGRQLDGGPPTIDALPEIRAAVGGRIPVIADGGIRRGLDVAKALALGADAVGLGRPFLYGL 316
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 2203519018 322 AFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVR 361
Cdd:COG1304   317 AAGGEAGVARVLELLRAELRRAMALTGCRSLAELRRALLV 356
PLN02493 PLN02493
probable peroxisomal (S)-2-hydroxy-acid oxidase
8-357 2.58e-141

probable peroxisomal (S)-2-hydroxy-acid oxidase


Pssm-ID: 166134 [Multi-domain]  Cd Length: 367  Bit Score: 405.65  E-value: 2.58e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018   8 ISDYEQHARTVLQKSVYDYYKSGANDQETLADNIRAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAH 87
Cdd:PLN02493    6 VTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAH 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  88 VDGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPeALRWMQLYIYKDREVSSQLVKRAEQMGYKAIFVTVDTPYLGNR 167
Cdd:PLN02493   86 PDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP-GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRR 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 168 FDDVRNRFKLPPQLRMKNFETNDLAfspKGNFGDNSGLAEYVAQAIDPSLSWDDIKWLRRLTSLPIVVKGILRGDDAQEA 247
Cdd:PLN02493  165 ESDIKNRFTLPPNLTLKNFEGLDLG---KMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 248 VKHGVDGILVSNHGARQLDGVPATIDALPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGARAVFVGRPIIWGLAFQGEK 327
Cdd:PLN02493  242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEA 321
                         330       340       350
                  ....*....|....*....|....*....|
gi 2203519018 328 GVQDVLEILKEEFRLAMALSGCQNVKVIDK 357
Cdd:PLN02493  322 GVRKVLQMLRDEFELTMALSGCRSLKEISR 351
 
Name Accession Description Interval E-value
FMN_dh pfam01070
FMN-dependent dehydrogenase;
15-362 0e+00

FMN-dependent dehydrogenase;


Pssm-ID: 426029 [Multi-domain]  Cd Length: 350  Bit Score: 507.07  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  15 ARTVLQKSVYDYYKSGANDQETLADNIRAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELAT 94
Cdd:pfam01070   1 ARKRLPRFAFDYLDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSNRDLSTTLLGQRLSLPFGIAPVGMQGLAHPDGELAL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  95 VRACQTMGTGMMLSSWATSSIEEVAEAGpEALRWMQLYIYKDREVSSQLVKRAEQMGYKAIFVTVDTPYLGNRFDDVRNR 174
Cdd:pfam01070  81 ARAAAAAGIPFVLSTVSSTSLEEVAAAA-GGPLWFQLYVPRDRELTEDLLERAEAAGYKALVLTVDTPVLGRRERDLRNG 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 175 FKLPPQLRMKNFEtnDLAFSPKGNF-----GDNSGLAEYVAQAIDPSLSWDDIKWLRRLTSLPIVVKGILRGDDAQEAVK 249
Cdd:pfam01070 160 FTLPPRLTPRNLL--DLALHPRWALgvlrrGGAGGAAAFVGSQFDPALTWDDLAWLRERWKGPLVVKGILSPEDAKRAVE 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 250 HGVDGILVSNHGARQLDGVPATIDALPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGARAVFVGRPIIWGLAFQGEKGV 329
Cdd:pfam01070 238 AGVDGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFLYGLAAGGEAGV 317
                         330       340       350
                  ....*....|....*....|....*....|...
gi 2203519018 330 QDVLEILKEEFRLAMALSGCQNVKVIDKTLVRK 362
Cdd:pfam01070 318 AHALEILRDELERTMALLGCKSIADLTPSLLRR 350
alpha_hydroxyacid_oxid_FMN cd02809
Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in ...
9-357 7.50e-169

Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.


Pssm-ID: 239203 [Multi-domain]  Cd Length: 299  Bit Score: 472.70  E-value: 7.50e-169
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018   9 SDYEQHARTVLQKSVYDYYKSGANDQETLADNIRAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHV 88
Cdd:cd02809     1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  89 DGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPeALRWMQLYIYKDREVSSQLVKRAEQMGYKAIFVTVDTPYLGNRf 168
Cdd:cd02809    81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAP-GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR- 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 169 ddvrnrfklppqlrmknfetndlafspkgnfgdnsglaeyvaqaidpsLSWDDIKWLRRLTSLPIVVKGILRGDDAQEAV 248
Cdd:cd02809   159 ------------------------------------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAV 190
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 249 KHGVDGILVSNHGARQLDGVPATIDALPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGARAVFVGRPIIWGLAFQGEKG 328
Cdd:cd02809   191 DAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAG 270
                         330       340
                  ....*....|....*....|....*....
gi 2203519018 329 VQDVLEILKEEFRLAMALSGCQNVKVIDK 357
Cdd:cd02809   271 VAHVLEILRDELERAMALLGCASLADLDP 299
LldD COG1304
FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl ...
2-361 9.20e-165

FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase [Energy production and conversion, Lipid transport and metabolism, General function prediction only]; FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 440915 [Multi-domain]  Cd Length: 357  Bit Score: 464.61  E-value: 9.20e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018   2 LPRLVCISDYEQHARTVLQKSVYDYYKSGANDQETLADNIRAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATA 81
Cdd:COG1304     1 MSRILSIEDLRRIARRKLPRFAFDYIDGGAGDEVTLRRNRAAFDRVRLRPRVLEDVSEIDLSTTLLGKRLAAPFLIAPMG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  82 MQCMAHVDGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPeALRWMQLYIYKDREVSSQLVKRAEQMGYKAIFVTVDT 161
Cdd:COG1304    81 GGGLAHPDGELALARAAAAAGIPMGLSTQSTTSLEEVAAAAP-APLWFQLYVPKDRGFTDDLLRRAEAAGADALVLTVDT 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 162 PYLGNRFDDVRNRFKLPPQLRMKNFEtnDLAFSPKGNFGdNSGLAEYVAQAIDPSLSWDDIKWLRRLTSLPIVVKGILRG 241
Cdd:COG1304   160 PVLGRRERDLREGFSQPPRLTPRNLL--EAATHPRWALG-LASLAAWLDTNFDPSLTWDDIAWLRERWPGPLIVKGVLSP 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 242 DDAQEAVKHGVDGILVSNHGARQLDGVPATIDALPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGARAVFVGRPIIWGL 321
Cdd:COG1304   237 EDARRAVDAGVDGIDVSNHGGRQLDGGPPTIDALPEIRAAVGGRIPVIADGGIRRGLDVAKALALGADAVGLGRPFLYGL 316
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 2203519018 322 AFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVR 361
Cdd:COG1304   317 AAGGEAGVARVLELLRAELRRAMALTGCRSLAELRRALLV 356
PLN02493 PLN02493
probable peroxisomal (S)-2-hydroxy-acid oxidase
8-357 2.58e-141

probable peroxisomal (S)-2-hydroxy-acid oxidase


Pssm-ID: 166134 [Multi-domain]  Cd Length: 367  Bit Score: 405.65  E-value: 2.58e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018   8 ISDYEQHARTVLQKSVYDYYKSGANDQETLADNIRAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAH 87
Cdd:PLN02493    6 VTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAH 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  88 VDGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPeALRWMQLYIYKDREVSSQLVKRAEQMGYKAIFVTVDTPYLGNR 167
Cdd:PLN02493   86 PDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP-GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRR 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 168 FDDVRNRFKLPPQLRMKNFETNDLAfspKGNFGDNSGLAEYVAQAIDPSLSWDDIKWLRRLTSLPIVVKGILRGDDAQEA 247
Cdd:PLN02493  165 ESDIKNRFTLPPNLTLKNFEGLDLG---KMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 248 VKHGVDGILVSNHGARQLDGVPATIDALPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGARAVFVGRPIIWGLAFQGEK 327
Cdd:PLN02493  242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEA 321
                         330       340       350
                  ....*....|....*....|....*....|
gi 2203519018 328 GVQDVLEILKEEFRLAMALSGCQNVKVIDK 357
Cdd:PLN02493  322 GVRKVLQMLRDEFELTMALSGCRSLKEISR 351
PLN02535 PLN02535
glycolate oxidase
1-361 5.51e-138

glycolate oxidase


Pssm-ID: 215294  Cd Length: 364  Bit Score: 397.28  E-value: 5.51e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018   1 MLPRLVCISDYEQHARTVLQKSVYDYYKSGANDQETLADNIRAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGAT 80
Cdd:PLN02535    1 MADEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  81 AMQCMAHVDGELATVRACQTMGTGMMLSSWATSSIEEVAeAGPEALRWMQLYIYKDREVSSQLVKRAEQMGYKAIFVTVD 160
Cdd:PLN02535   81 AMHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVA-SSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTAD 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 161 TPYLGNRFDDVRNRFKLPpqlRMKNFETndlAFSPKGNFGDNSGLAEYVAQAIDPSLSWDDIKWLRRLTSLPIVVKGILR 240
Cdd:PLN02535  160 VPRLGRREADIKNKMISP---QLKNFEG---LLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLT 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 241 GDDAQEAVKHGVDGILVSNHGARQLDGVPATIDALPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGARAVFVGRPIIWG 320
Cdd:PLN02535  234 REDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYG 313
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 2203519018 321 LAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVR 361
Cdd:PLN02535  314 LAAKGEDGVRKVIEMLKDELEITMALSGCPSVKDITRSHVR 354
FCB2_FMN cd02922
Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) ...
9-353 1.96e-129

Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.


Pssm-ID: 239238 [Multi-domain]  Cd Length: 344  Bit Score: 374.63  E-value: 1.96e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018   9 SDYEQHARTVLQKSVYDYYKSGANDQETLADNIRAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHV 88
Cdd:cd02922     1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  89 DGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPE-ALRWMQLYIYKDREVSSQLVKRAEQMGYKAIFVTVDTPYLGNR 167
Cdd:cd02922    81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPdQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 168 FDDVRNRFKlppqlrmknfETNDLAFSPKGNFGDNSGLAEYVAQAIDPSLSWDDIKWLRRLTSLPIVVKGILRGDDAQEA 247
Cdd:cd02922   161 ERDERLKAE----------EAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLA 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 248 VKHGVDGILVSNHGARQLDGVPATIDALPEIVE---AVEGKVEVFLDGGVRKGTDVLKALALGARAVFVGRPIIWGLAFQ 324
Cdd:cd02922   231 AEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKhcpEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAY 310
                         330       340
                  ....*....|....*....|....*....
gi 2203519018 325 GEKGVQDVLEILKEEFRLAMALSGCQNVK 353
Cdd:cd02922   311 GEEGVEKAIQILKDEIETTMRLLGVTSLD 339
LMO_FMN cd03332
L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that ...
9-360 1.74e-128

L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.


Pssm-ID: 239448 [Multi-domain]  Cd Length: 383  Bit Score: 373.54  E-value: 1.74e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018   9 SDYEQHARTVLQKSVYDYYKSGANDQETLADNIRAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHV 88
Cdd:cd03332    22 ERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQELFHP 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  89 DGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPEALRWMQLYIYKDREVSSQLVKRAEQMGYKAIFVTVDTPYLGNRF 168
Cdd:cd03332   102 DAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRP 181
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 169 DDVRNRFKlpPQLRMKNFE--TNDLAF------SPKGNFGDNSGLAEYVAQAI----DPSLSWDDIKWLRRLTSLPIVVK 236
Cdd:cd03332   182 RDLDLGYL--PFLRGIGIAnyFSDPVFrkklaePVGEDPEAPPPMEAAVARFVsvfsGPSLTWEDLAFLREWTDLPIVLK 259
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 237 GILRGDDAQEAVKHGVDGILVSNHGARQLDGVPATIDALPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGARAVFVGRP 316
Cdd:cd03332   260 GILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRP 339
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 2203519018 317 IIWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLV 360
Cdd:cd03332   340 YAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRDAL 383
PLN02979 PLN02979
glycolate oxidase
51-357 1.87e-127

glycolate oxidase


Pssm-ID: 166620  Cd Length: 366  Bit Score: 370.59  E-value: 1.87e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  51 PRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHVDGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPeALRWMQ 130
Cdd:PLN02979   48 PRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGP-GIRFFQ 126
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 131 LYIYKDREVSSQLVKRAEQMGYKAIFVTVDTPYLGNRFDDVRNRFKLPPQLRMKNFETNDLAfspKGNFGDNSGLAEYVA 210
Cdd:PLN02979  127 LYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLG---KMDEANDSGLASYVA 203
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 211 QAIDPSLSWDDIKWLRRLTSLPIVVKGILRGDDAQEAVKHGVDGILVSNHGARQLDGVPATIDALPEIVEAVEGKVEVFL 290
Cdd:PLN02979  204 GQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFL 283
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2203519018 291 DGGVRKGTDVLKALALGARAVFVGRPIIWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDK 357
Cdd:PLN02979  284 DGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISR 350
LOX_like_FMN cd04737
L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing ...
10-358 1.28e-116

L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).


Pssm-ID: 240088 [Multi-domain]  Cd Length: 351  Bit Score: 342.50  E-value: 1.28e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  10 DYEQHARTVLQKSVYDYYKSGANDQETLADNIRAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHVD 89
Cdd:cd04737    10 DLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAHGLAHAT 89
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  90 GELATVRACQTMGTGMMLSSWATSSIEEVAEAGPEALRWMQLYIYKDREVSSQLVKRAEQMGYKAIFVTVDTPYLGNRFD 169
Cdd:cd04737    90 GEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREA 169
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 170 DVRNRFKLPpqLRMKNFEtNDLAFSPKGnfgdnSGLAEYVAQAiDPSLSWDDIKWLRRLTSLPIVVKGILRGDDAQEAVK 249
Cdd:cd04737   170 DIRNKFQFP--FGMPNLN-HFSEGTGKG-----KGISEIYAAA-KQKLSPADIEFIAKISGLPVIVKGIQSPEDADVAIN 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 250 HGVDGILVSNHGARQLDGVPATIDALPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGARAVFVGRPIIWGLAFQGEKGV 329
Cdd:cd04737   241 AGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGAQGV 320
                         330       340
                  ....*....|....*....|....*....
gi 2203519018 330 QDVLEILKEEFRLAMALSGCQNVKVIDKT 358
Cdd:cd04737   321 ASVLEHLNKELKIVMQLAGTRTIEDVKRT 349
MDH_FMN cd04736
Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of ...
10-357 1.11e-91

Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).


Pssm-ID: 240087  Cd Length: 361  Bit Score: 279.02  E-value: 1.11e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  10 DYEQHARTVLQKSVYDYYKSGANDQETLADNIRAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPICVGATAMQCMAHVD 89
Cdd:cd04736     2 DYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWPN 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  90 GELATVRACQTMGTGMMLSSWATSSIEEVAEAGPEALrWMQLYIYKdREVSSQLVKRAEQMGYKAIFVTVDTPYLGNRFD 169
Cdd:cd04736    82 GDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDL-WFQLYVVH-RELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 170 DVRNRFKLP--------------PQLRMKNFETNDLAfspKGNFG--DNSGLAEYVA---QAIDPSLSWDDIKWLRRLTS 230
Cdd:cd04736   160 DLRNGFAIPfrytprvlldgilhPRWLLRFLRNGMPQ---LANFAsdDAIDVEVQAAlmsRQMDASFNWQDLRWLRDLWP 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 231 LPIVVKGILRGDDAQEAVKHGVDGILVSNHGARQLDGVPATIDALPEIVEAVegKVEVFLDGGVRKGTDVLKALALGARA 310
Cdd:cd04736   237 HKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YKPVLIDSGIRRGSDIVKALALGANA 314
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 2203519018 311 VFVGRPIIWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDK 357
Cdd:cd04736   315 VLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLTP 361
lldD PRK11197
L-lactate dehydrogenase; Provisional
7-366 4.09e-90

L-lactate dehydrogenase; Provisional


Pssm-ID: 183033  Cd Length: 381  Bit Score: 275.75  E-value: 4.09e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018   7 CISDYEQHARTVLQKSVYDYYKSGANDQETLADNIRAFSRWKLYPRMLRNVADIDLSTSVLGQRVSMPIC---VGATAMq 83
Cdd:PRK11197    5 AASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVAlapVGLTGM- 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  84 cMAHvDGELATVRACQTMGTGMMLSSWATSSIEEVAEAGPEALrWMQLYIYKDREVSSQLVKRAEQMGYKAIFVTVDTPY 163
Cdd:PRK11197   84 -YAR-RGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPM-WFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPV 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 164 LGNRFDDVRNRFKLPP-------QLRMKNFETNDLAFSPK----GN----FGDNSGLAEYVAQA---IDPSLSWDDIKWL 225
Cdd:PRK11197  161 PGARYRDAHSGMSGPNaamrrylQAVTHPQWAWDVGLNGRphdlGNisayLGKPTGLEDYIGWLgnnFDPSISWKDLEWI 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 226 RRLTSLPIVVKGILRGDDAQEAVKHGVDGILVSNHGARQLDGVPATIDALPEIVEAVEGKVEVFLDGGVRKGTDVLKALA 305
Cdd:PRK11197  241 RDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA 320
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2203519018 306 LGARAVFVGRPIIWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKNPLA 366
Cdd:PRK11197  321 LGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLVQGNAA 381
IDI-2_FMN cd02811
Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. ...
56-353 2.00e-19

Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.


Pssm-ID: 239205 [Multi-domain]  Cd Length: 326  Bit Score: 87.94  E-value: 2.00e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018  56 NVADIDLSTSVLGQRVSMPICVGAtamqcM-------AHVDGELAtvRACQTMGTGMMLSS----------WATSSIeeV 118
Cdd:cd02811    36 DLDDIDLSTEFLGKRLSAPLLISA-----MtggsekaKEINRNLA--EAAEELGIAMGVGSqraaledpelAESFTV--V 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 119 AEAGPEALRWMQLYIYKDREVSSQLVKRAEQM-GYKAIFVTVdtpylgnrfddvrNrfklPPQlrmknfEtndlAFSPKG 197
Cdd:cd02811   107 REAPPNGPLIANLGAVQLNGYGVEEARRAVEMiEADALAIHL-------------N----PLQ------E----AVQPEG 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 198 --NFgdnSGLaeyvaqaidpslsWDDIKWLRRLTSLPIVVK----GILRgDDAQEAVKHGVDGILVSNHG---------A 262
Cdd:cd02811   160 drDF---RGW-------------LERIEELVKALSVPVIVKevgfGISR-ETAKRLADAGVKAIDVAGAGgtswarvenY 222
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 263 RQLD------------GVPaTIDALPEIVEAVEgKVEVFLDGGVRKGTDVLKALALGARAVFVGRPIIwGLAFQGEKGVQ 330
Cdd:cd02811   223 RAKDsdqrlaeyfadwGIP-TAASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFL-KAALEGEEAVI 299
                         330       340
                  ....*....|....*....|...
gi 2203519018 331 DVLEILKEEFRLAMALSGCQNVK 353
Cdd:cd02811   300 ETIEQIIEELRTAMFLTGAKNLA 322
TIM_phosphate_binding cd04722
TIM barrel proteins share a structurally conserved phosphate binding motif and in general ...
204-315 1.94e-09

TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.


Pssm-ID: 240073 [Multi-domain]  Cd Length: 200  Bit Score: 56.83  E-value: 1.94e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 204 GLAEYVAQAIDPSLSWDDIKWLR-RLTSLPIVVKGILRGDDAQEAVK-HGVDGILVSNHGARQLDGVPATIDALPEIVEA 281
Cdd:cd04722    87 GVEIHGAVGYLAREDLELIRELReAVPDVKVVVKLSPTGELAAAAAEeAGVDEVGLGNGGGGGGGRDAVPIADLLLILAK 166
                          90       100       110
                  ....*....|....*....|....*....|....
gi 2203519018 282 VEGKVEVFLDGGVRKGTDVLKALALGARAVFVGR 315
Cdd:cd04722   167 RGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200
Glu_synthase pfam01645
Conserved region in glutamate synthase; This family represents a region of the glutamate ...
232-316 1.08e-08

Conserved region in glutamate synthase; This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organizms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.


Pssm-ID: 396287 [Multi-domain]  Cd Length: 367  Bit Score: 56.19  E-value: 1.08e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 232 PIVVK---GILRGDDAQEAVKHGVDGILVSNH----GA-----RQLDGVPaTIDALPEIVEAV--EG---KVEVFLDGGV 294
Cdd:pfam01645 204 PISVKlvsGHGVGTIAAGVAKAGADIILIDGYdggtGAspktsIKHAGLP-WELALAEAHQTLkeNGlrdRVSLIADGGL 282
                          90       100
                  ....*....|....*....|..
gi 2203519018 295 RKGTDVLKALALGARAVFVGRP 316
Cdd:pfam01645 283 RTGADVAKAAALGADAVYIGTA 304
GltS_FMN cd02808
Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that ...
222-315 1.26e-08

Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.


Pssm-ID: 239202 [Multi-domain]  Cd Length: 392  Bit Score: 56.01  E-value: 1.26e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 222 IKWLRRLT-SLPIVVK---GILRGDDAqEAVKHG-VDGILVSNH----GARQL---D--GVPaTIDALPEIVEA-----V 282
Cdd:cd02808   205 IEDLREATgGKPIGVKlvaGHGEGDIA-AGVAAAgADFITIDGAeggtGAAPLtfiDhvGLP-TELGLARAHQAlvkngL 282
                          90       100       110
                  ....*....|....*....|....*....|...
gi 2203519018 283 EGKVEVFLDGGVRKGTDVLKALALGARAVFVGR 315
Cdd:cd02808   283 RDRVSLIASGGLRTGADVAKALALGADAVGIGT 315
NPD_like cd04730
2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes ...
242-314 2.03e-06

2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.


Pssm-ID: 240081 [Multi-domain]  Cd Length: 236  Bit Score: 48.25  E-value: 2.03e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2203519018 242 DDAQEAVKHGVDGILVSN-----HGARQLDGvpaTIDALPEIVEAVegKVEVFLDGGVRKGTDVLKALALGARAVFVG 314
Cdd:cd04730   113 EEARKAEAAGADALVAQGaeaggHRGTFDIG---TFALVPEVRDAV--DIPVIAAGGIADGRGIAAALALGADGVQMG 185
YrpB COG2070
NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family [General ...
244-314 9.99e-06

NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family [General function prediction only];


Pssm-ID: 441673 [Multi-domain]  Cd Length: 302  Bit Score: 46.64  E-value: 9.99e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2203519018 244 AQEAVKHGVDGILVSNHGA---RQLDGVPaTIDALPEIVEAVegKVEVFLDGGVRKGTDVLKALALGARAVFVG 314
Cdd:COG2070   117 ARKAEKAGADAVVAEGAEAgghRGADEVS-TFALVPEVRDAV--DIPVIAAGGIADGRGIAAALALGADGVQMG 187
IMPDH cd00381
IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the ...
222-316 4.50e-05

IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.


Pssm-ID: 238223 [Multi-domain]  Cd Length: 325  Bit Score: 44.82  E-value: 4.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 222 IKWLRRL-TSLPIVVKGILRGDDAQEAVKHGVDGILV-----SNHGARQLDGV--P-ATidALPEIVEAVEG-KVEVFLD 291
Cdd:cd00381   126 IKFIKKKyPNVDVIAGNVVTAEAARDLIDAGADGVKVgigpgSICTTRIVTGVgvPqAT--AVADVAAAARDyGVPVIAD 203
                          90       100
                  ....*....|....*....|....*
gi 2203519018 292 GGVRKGTDVLKALALGARAVFVGRP 316
Cdd:cd00381   204 GGIRTSGDIVKALAAGADAVMLGSL 228
TMP-TENI pfam02581
Thiamine monophosphate synthase; Thiamine monophosphate synthase (TMP) (EC:2.5.1.3) catalyzes ...
215-257 9.27e-03

Thiamine monophosphate synthase; Thiamine monophosphate synthase (TMP) (EC:2.5.1.3) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate. This Pfam family also includes the regulatory protein TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production. While TenI shows high sequence similarity with thiamin phosphate synthase, the purified protein has no thiamin phosphate synthase activity. Instead, it is a thiazole tautomerase.


Pssm-ID: 426849 [Multi-domain]  Cd Length: 180  Bit Score: 36.76  E-value: 9.27e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2203519018 215 PSLSWDDIKWLRRLTSLPIVVKGILRGDDAQEAVKHGVDGILV 257
Cdd:pfam02581 134 PPLGLEGLKAIAEAVEIPVVAIGGITPENVPEVIEAGADGVAV 176
DHOD_DHPD_FMN cd02810
Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding ...
223-319 9.61e-03

Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.


Pssm-ID: 239204 [Multi-domain]  Cd Length: 289  Bit Score: 37.33  E-value: 9.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 223 KWLRRLTSLPIVVK--GILRGDDAQEAVK----HGVDGILVSNH-GARQLD-------------GV------PATIDALP 276
Cdd:cd02810   155 KAVKAAVDIPLLVKlsPYFDLEDIVELAKaaerAGADGLTAINTiSGRVVDlktvgpgpkrgtgGLsgapirPLALRWVA 234
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2203519018 277 EIVEAVEGKVEVFLDGGVRKGTDVLKALALGARAVFVGRPIIW 319
Cdd:cd02810   235 RLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMW 277
IMPDH pfam00478
IMP dehydrogenase / GMP reductase domain; This family is involved in biosynthesis of guanosine ...
222-315 9.63e-03

IMP dehydrogenase / GMP reductase domain; This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.


Pssm-ID: 459826 [Multi-domain]  Cd Length: 463  Bit Score: 37.75  E-value: 9.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2203519018 222 IKWLR-RLTSLPIVVKGILRGDDAQEAVKHGVDGI-------------LVSnhGArqldGVPaTIDALPEIVEAVEG-KV 286
Cdd:pfam00478 252 VKWIKkKYPDVQVIAGNVATAEGAKALIEAGADAVkvgigpgsicttrVVA--GV----GVP-QLTAIYDVAEAAKKyGV 324
                          90       100
                  ....*....|....*....|....*....
gi 2203519018 287 EVFLDGGVRKGTDVLKALALGARAVFVGR 315
Cdd:pfam00478 325 PVIADGGIKYSGDIVKALAAGADAVMLGS 353
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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