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Conserved domains on  [gi|1493601144|gb|AYM48330|]
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peptidase family S51, partial [uncultured Erysipelotrichaceae bacterium]

Protein Classification

type 1 glutamine amidotransferase family protein( domain architecture ID 73)

type 1 glutamine amidotransferase (GATase1) family protein

CATH:  3.40.50.880
PubMed:  10387030
SCOP:  3001405

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GAT_1 super family cl00020
Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase ...
98-141 3.11e-03

Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain.


The actual alignment was detected with superfamily member pfam03575:

Pssm-ID: 469582 [Multi-domain]  Cd Length: 206  Bit Score: 36.12  E-value: 3.11e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1493601144  98 SVQELTQY----DMIAFCGGNAHTLLSEINRTGFSKPLKQAIENGLVY 141
Cdd:pfam03575  72 PLAEIEEKlleaDGIYVGGGNTFHLLKLLYETGLDKIIREAVQAGLPY 119
 
Name Accession Description Interval E-value
Peptidase_S51 pfam03575
Peptidase family S51;
98-141 3.11e-03

Peptidase family S51;


Pssm-ID: 397574 [Multi-domain]  Cd Length: 206  Bit Score: 36.12  E-value: 3.11e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1493601144  98 SVQELTQY----DMIAFCGGNAHTLLSEINRTGFSKPLKQAIENGLVY 141
Cdd:pfam03575  72 PLAEIEEKlleaDGIYVGGGNTFHLLKLLYETGLDKIIREAVQAGLPY 119
 
Name Accession Description Interval E-value
Peptidase_S51 pfam03575
Peptidase family S51;
98-141 3.11e-03

Peptidase family S51;


Pssm-ID: 397574 [Multi-domain]  Cd Length: 206  Bit Score: 36.12  E-value: 3.11e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1493601144  98 SVQELTQY----DMIAFCGGNAHTLLSEINRTGFSKPLKQAIENGLVY 141
Cdd:pfam03575  72 PLAEIEEKlleaDGIYVGGGNTFHLLKLLYETGLDKIIREAVQAGLPY 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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