View
Concise Results
Standard Results
Full Results
AAA family ATPase (plasmid) [Citrobacter freundii]
Protein Classification
TraC family protein ( domain architecture ID 1002648 )
TraC family protein similar to Thermoanaerobacter pseudethanolicus type IV secretory pathway Virb4 components-like protein
List of domain hits
Name
Accession
Description
Interval
E-value
TraC-F-type super family
cl37161 type-IV secretion system protein TraC; The protein family described here is common among the F, ...
22-880
2.37e-114
type-IV secretion system protein TraC; The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
TIGR02746 :Pssm-ID: 274279 [Multi-domain]
Cd Length: 797
Bit Score: 368.19
E-value: 2.37e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 22 V YD QI pg TNY F LIDGN r L GF MFICN P SP G VFDNQQDV L AE L FKM D F P TD T IC Q TS L TAL P DLTLH L SAWS avrggrm E GH 101
Cdd:TIGR02746 6 A YD EE -- SGI F MNRHS - M GF GLELT P LS G ADESLVES L SS L LRT D L P EG T DI Q VL L WGS P QIGPF L DRNE ------- E QF 75
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 102 DKLK G D L -- L TAYQLD YY DRSLNEPLK p DHDKLM LRDF QIWM S F SIP L KS al P T E IE I NRIDA L YSDLI S K L NTL G LFPH 179
Cdd:TIGR02746 76 SQNG G I L ek L ARNRVK YY LNAAQKGFF - KNSGVT LRDF RLFL S V SIP F KS -- P N E DV I QELRS L RERIE S T L RSA G FGCR 152
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 180 K V S AE NW L YCMDKLMH P GKT S RW a EGHVEVNTMRR L NE Q LNV P GRKYT V T E NNFSSTTQSTDVSEHRYFKQL S VVK FPE H 259
Cdd:TIGR02746 153 R V D AE DL L SLVREMLN P DPD S IH - PWPISYDPNQL L RD Q IVD P DTDLE V H E GGLEVDHEDNQGEVKTRIRVF S IKR FPE E 231
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 260 VNFGSMYE L VVNWM N GRKT I FS PF MITQ TV HFA D PL K L - A RDNVRY K AIT nk QASIPTVLTFC P R L KDMDNDYMAVTREL 338
Cdd:TIGR02746 232 FTLWQTGN L IGDLL N PSLQ I TC PF LLSF TV RVE D QV K K k A KATAKA K DLN -- KQAKSSMAKWV P S L EKKLKEIKYLREAI 309
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 339 ED G - AR L LHS Y LTFTVMG N SALDVQSAAD q L KS FYLESRVKV A D D SY I IFPS F VSC LP MCNDPKTIL DL DRFEV V --- S N 414
Cdd:TIGR02746 310 AS G g DS L VSM Y YNVLLFT N PDNLRRDVEA - A KS SFRKNGFDL A E D KR I QLQA F LAA LP FNPTEGLFE DL KKAGR V rtl S S 388
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 415 TG A AHMT PL FGP WKG n T DRPV L N L VS R E GQL LGL D I F KT - S AS YN MV V GAT SGAGKSF WVAYI I NNY L GA G prsnnlihy 493
Cdd:TIGR02746 389 AN A VNLL PL IAD WKG - T KGSG L L L PT R R GQL SAF D P F DS d S TN YN IA V VGG SGAGKSF FMQEL I VDN L SR G --------- 458
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 494 rdtfegfknnaydafdpdg AQIF V V DVGRSY QGIS E QY t NSQF I D F GKKPDFT LNPF AF ltdvtvadrvfdeapvfndds 573
Cdd:TIGR02746 459 ------------------- GKVW V I DVGRSY KKLC E ML - GGTY I E F SPESNIC LNPF TG --------------------- 497
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 574 n NN DE E K D KVA qt IMVLNQLKI MAS EK G NID D F Q Q S VMLQL I GDEY nes RKV G STGS IT GFARRCSAH E ---- D K RIKD I 649
Cdd:TIGR02746 498 - NN VT E I D DEI -- DQITALIAL MAS PE G GLS D E Q R S TLEEA I LAAW --- KEY G NEAT IT DVQDALQQL E dden D P RIKD L 571
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 650 G EQ L GQWCEG G I YG n R FTEKLPPIN F GS RF I VLELEEL KGT P H LQ T VVL M S IIQAAQHA M FIKKDG RR RLF I L DEAW EYI 729
Cdd:TIGR02746 572 G KM L NPYTSH G V YG - R YFNGPNNLD F SN RF V VLELEEL EDR P D LQ A VVL F S LMVRITGE M YLTPRK RR KIC I I DEAW SLL 650
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 730 R pdnasgssn QS N QFFSS F L E AAW RR F RK TNC A G I C ITQ SF ED YFT S SVG RA LT ANS P WKII MK Q EK ESI EAM KA N N Y F S 809
Cdd:TIGR02746 651 D --------- GA N PQAAD F I E TGY RR A RK YGG A F I T ITQ GI ED FYS S PEA RA AY ANS D WKII LR Q SA ESI AKL KA E N P F T 721
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1476633841 810 TTDA E YERM K NI RT I K R AFSE M L V R FENFQEIC RL Y VD RKMELC F T TD STDRGKLW E IQSRL d C S YG EAIE 880
Cdd:TIGR02746 722 FSPF E KRLI K SL RT A K G AFSE L L I R SGEGSSVH RL F VD PFSRVL F S TD GPEFEEVE E LREQG - L S LE EAIE 791
Name
Accession
Description
Interval
E-value
TraC-F-type
TIGR02746 type-IV secretion system protein TraC; The protein family described here is common among the F, ...
22-880
2.37e-114
type-IV secretion system protein TraC; The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Pssm-ID: 274279 [Multi-domain]
Cd Length: 797
Bit Score: 368.19
E-value: 2.37e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 22 V YD QI pg TNY F LIDGN r L GF MFICN P SP G VFDNQQDV L AE L FKM D F P TD T IC Q TS L TAL P DLTLH L SAWS avrggrm E GH 101
Cdd:TIGR02746 6 A YD EE -- SGI F MNRHS - M GF GLELT P LS G ADESLVES L SS L LRT D L P EG T DI Q VL L WGS P QIGPF L DRNE ------- E QF 75
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 102 DKLK G D L -- L TAYQLD YY DRSLNEPLK p DHDKLM LRDF QIWM S F SIP L KS al P T E IE I NRIDA L YSDLI S K L NTL G LFPH 179
Cdd:TIGR02746 76 SQNG G I L ek L ARNRVK YY LNAAQKGFF - KNSGVT LRDF RLFL S V SIP F KS -- P N E DV I QELRS L RERIE S T L RSA G FGCR 152
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 180 K V S AE NW L YCMDKLMH P GKT S RW a EGHVEVNTMRR L NE Q LNV P GRKYT V T E NNFSSTTQSTDVSEHRYFKQL S VVK FPE H 259
Cdd:TIGR02746 153 R V D AE DL L SLVREMLN P DPD S IH - PWPISYDPNQL L RD Q IVD P DTDLE V H E GGLEVDHEDNQGEVKTRIRVF S IKR FPE E 231
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 260 VNFGSMYE L VVNWM N GRKT I FS PF MITQ TV HFA D PL K L - A RDNVRY K AIT nk QASIPTVLTFC P R L KDMDNDYMAVTREL 338
Cdd:TIGR02746 232 FTLWQTGN L IGDLL N PSLQ I TC PF LLSF TV RVE D QV K K k A KATAKA K DLN -- KQAKSSMAKWV P S L EKKLKEIKYLREAI 309
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 339 ED G - AR L LHS Y LTFTVMG N SALDVQSAAD q L KS FYLESRVKV A D D SY I IFPS F VSC LP MCNDPKTIL DL DRFEV V --- S N 414
Cdd:TIGR02746 310 AS G g DS L VSM Y YNVLLFT N PDNLRRDVEA - A KS SFRKNGFDL A E D KR I QLQA F LAA LP FNPTEGLFE DL KKAGR V rtl S S 388
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 415 TG A AHMT PL FGP WKG n T DRPV L N L VS R E GQL LGL D I F KT - S AS YN MV V GAT SGAGKSF WVAYI I NNY L GA G prsnnlihy 493
Cdd:TIGR02746 389 AN A VNLL PL IAD WKG - T KGSG L L L PT R R GQL SAF D P F DS d S TN YN IA V VGG SGAGKSF FMQEL I VDN L SR G --------- 458
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 494 rdtfegfknnaydafdpdg AQIF V V DVGRSY QGIS E QY t NSQF I D F GKKPDFT LNPF AF ltdvtvadrvfdeapvfndds 573
Cdd:TIGR02746 459 ------------------- GKVW V I DVGRSY KKLC E ML - GGTY I E F SPESNIC LNPF TG --------------------- 497
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 574 n NN DE E K D KVA qt IMVLNQLKI MAS EK G NID D F Q Q S VMLQL I GDEY nes RKV G STGS IT GFARRCSAH E ---- D K RIKD I 649
Cdd:TIGR02746 498 - NN VT E I D DEI -- DQITALIAL MAS PE G GLS D E Q R S TLEEA I LAAW --- KEY G NEAT IT DVQDALQQL E dden D P RIKD L 571
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 650 G EQ L GQWCEG G I YG n R FTEKLPPIN F GS RF I VLELEEL KGT P H LQ T VVL M S IIQAAQHA M FIKKDG RR RLF I L DEAW EYI 729
Cdd:TIGR02746 572 G KM L NPYTSH G V YG - R YFNGPNNLD F SN RF V VLELEEL EDR P D LQ A VVL F S LMVRITGE M YLTPRK RR KIC I I DEAW SLL 650
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 730 R pdnasgssn QS N QFFSS F L E AAW RR F RK TNC A G I C ITQ SF ED YFT S SVG RA LT ANS P WKII MK Q EK ESI EAM KA N N Y F S 809
Cdd:TIGR02746 651 D --------- GA N PQAAD F I E TGY RR A RK YGG A F I T ITQ GI ED FYS S PEA RA AY ANS D WKII LR Q SA ESI AKL KA E N P F T 721
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1476633841 810 TTDA E YERM K NI RT I K R AFSE M L V R FENFQEIC RL Y VD RKMELC F T TD STDRGKLW E IQSRL d C S YG EAIE 880
Cdd:TIGR02746 722 FSPF E KRLI K SL RT A K G AFSE L L I R SGEGSSVH RL F VD PFSRVL F S TD GPEFEEVE E LREQG - L S LE EAIE 791
VirB4
COG3451 Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ...
246-870
2.37e-76
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain]
Cd Length: 546
Bit Score: 259.11
E-value: 2.37e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 246 RY FKQ LS VVKF P EHVNF G smyelvvn WMNGRKTIFSP F MI TQ TVHFA D PLK l A RDNVRY K AITNKQASIPTVLTFCPRLK 325
Cdd:COG3451 8 RY GRV LS IKGY P SETSP G -------- LLDPLLQLPCE F IV TQ SFTPL D KDE - A LKKLKR K RRRLESKRKSEQALVDDDAE 78
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 326 DMDN D YMAVTR EL E - D G A RL LHSY LT F TV MGNSALDVQS A ADQLK S FYLESRVKVADDSYIIFPS F V S C LP MCN D PKT il 404
Cdd:COG3451 79 SQAE D AEEALD EL Q s G G E RL GEVH LT L TV FADDLEELEE A VREVE S ALQSAGFTLVRETLNQEEA F L S S LP GNF D YRL -- 156
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 405 dld R FEVVSNTGA A HMT P LFGPWK G n TDRPVLN L VS R E G QLLGL D IFKTSASY N MVVGAT SG A GKSF WVAYIINNY L GA G 484
Cdd:COG3451 157 --- R RRLLTTSNL A ALF P FHSFEL G - DPWGIYL L NT R S G TPVFF D FHDGLDNG N TLILGP SG S GKSF LLKLLLLQL L RY G 232
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 485 P R snnlihyrdtfegfknnaydafdpdgaq I FVV D V G R SY QGISEQY t NSQF ID FGKKPDFT LNPF AF ltdvtvadrvfd 564
Cdd:COG3451 233 A R ---------------------------- I VIF D P G G SY EILVRAL - GGTY ID LSPGSPTG LNPF DL ------------ 271
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 565 eapvfnddsnnn DEEKD K VA qti MV L NQ L KIMAS - E KGNIDDFQQSVMLQLIGDE Y NESRKVGS T g SITGFARRCS ah E D 643
Cdd:COG3451 272 ------------ EDTEE K RD --- FL L EL L ELLLG r E GEPLTPEERAAIDRAVRAL Y RRADPEER T - TLSDLYELLK -- E Q 333
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 644 KRI KD IGEQ L GQWCE GG I YG NR F TEK l PPINFG - S RF I V LE L E EL KGT P H L QTV VL MSIIQAAQHAMFIKK DGR RR L FIL 722
Cdd:COG3451 334 PEA KD LAAR L EPYTK GG S YG WL F DGP - TNLDLS d A RF V V FD L T EL LDN P E L RPP VL LYLLHRIWNRLRKNN DGR PT L IVI 412
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 723 DEAW EYIR pdnasgssnqs N QF F SS FLE AAWRRF RK T N C A G I CI TQS F ED YFT S SVGR A LTA NS PW KI IMK Q E K ES IE AM 802
Cdd:COG3451 413 DEAW LLLD ----------- N PA F AE FLE EWLKTL RK Y N G A V I FA TQS V ED FLS S PIAE A IIE NS AT KI LLP Q P K AD IE DY 481
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1476633841 803 K an NYFSTTDA E Y E RMKNIRTI KR A F sem L VRFE N FQEIC RL YVDRKMELCFT T DSTDRGK L W E IQSR 870
Cdd:COG3451 482 A -- ELLGLSER E L E LIRSAGRG KR D F --- L IKQG N GSVVF RL DLSPEELALLS T KPEEVAI L D E LRAE 544
PRK13721
PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
10-860
3.60e-44
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain]
Cd Length: 844
Bit Score: 172.21
E-value: 3.60e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 10 E L S RH QF GGFI P V -- YDQ IP G tny FLIDGNRL GFM FICN P SP G V fd N QQD V L A -- ELFKMDF P TDT icqtsltal P d L TL 85
Cdd:PRK13721 4 E M S FP QF SRLL P Y rd YDQ ES G --- LFMNDTTM GFM LEAI P LN G A -- N ESI V E A ld HMLRTKL P RGI --------- P - L CI 68
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 86 HL SA w S AVR G G R M E --- GHDKLK G DL --- LT A YQLD YY D R SLNE -- PL KPDHD - K L M LR DFQIWM S FSI P L K SA lp TEIE 156
Cdd:PRK13721 69 HL MS - S KLV G D R I E ygl REFSWS G EQ aer FN A ITRA YY M R AALT qf PL PEGMN l P L T LR HYRVFI S YCS P S K KK -- SRAD 145
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 157 I NRIDA L YSDLISK L NTLGLFPHK V S A ENWLYCMDKLMH -- P GKTSR w AEGHV ev NTMRR LN E Q LNVPGRKYT V TENNFS 234
Cdd:PRK13721 146 I LEMEN L VKIIRAS L QGASITTQT V D A QAFISIVREMIN hr P DSLYP - KRRQL -- DPYSD LN Y Q CVEDSFDLK V RADYLT 222
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 235 STTQSTDVSEHRYFKQLSVV K F PE HVNFGS M YELVV N WM N GRKT I FS PF MI T Q T VHFA D PL K LARDNVRYKAITN K QASI 314
Cdd:PRK13721 223 LGLRENGRNSTARILNFHLA K N PE IAFLWQ M ADNYS N LL N PELS I SC PF IL T L T LEVE D QV K TQSEANLKYMDLE K KSKT 302
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 315 PTVLT F c P RLKDMDNDYMAVTRE L EDGARL L H SY L ---- T F TVMG N SAL dv QSAADQLKSFYLESRVKVADDSYIIFPS F 390
Cdd:PRK13721 303 SYAKW F - P SVEKEAKEWGELRQR L GSNQSS L V SY F lnit A F CPDN N ETA -- LEVEQDILNSFRKNGFELISPRFNHMRN F 379
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 391 VS CLP MCNDPKTIL DL DRFE VV S --- NTGA A HMT PL F gpwkgn T D R P V ---- L NLVSREG QL LGL DIF KT --- SAS YNM V 460
Cdd:PRK13721 380 LT CLP FMAGEGLFK DL KEAG VV Q rae SFNV A NLM PL V ------ A D N P L tpag L LAPTYRN QL AFI DIF FR gmn NTN YNM A 453
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 461 V GA TSGAGK SFWVAYI I NNY L GA G prsnnlihyrdtfe GF knnaydafdpdgaq IF V V D V G RS Y QGIS E Q ---- Y TNSQF 536
Cdd:PRK13721 454 V CG TSGAGK TGLIQPL I RSV L DS G -------------- GF -------------- AV V F D M G DG Y KSLC E N mggv Y LDGET 505
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 537 ID F gkkpdftl NPFA FL TD V tvadrvfdeapvfnddsnnndeek D KV A QT I M vl N QL KI MAS EK GN I D DFQQSVM LQ LIG 616
Cdd:PRK13721 506 LR F -------- NPFA NI TD I ------------------------ D QS A ER I R -- D QL SV MAS PN GN L D EVHEGLL LQ AVR 551
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 617 DEYNESRKVGSTGSITG F ARRCSAH E --- D K ----- R IKDIGEQ L G Q WCEG G I YG NR F TEKL P PINFGS R FI VLEL EE L K 688
Cdd:PRK13721 552 ASWLAKKNRARIDDVVD F LKNARDS E qya D S ptirs R LDEMIVL L D Q YTAN G T YG EY F NSDE P SLRDDA R MV VLEL GG L E 631
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 689 GT P H L QTV V LM S I I QAAQHA M FIKKDGRRR L FIL DE A W EYI rpdnasgss NQS N QFFSS F L E AAW R RF R KTNC A G I C ITQ 768
Cdd:PRK13721 632 DR P S L LVA V MF S L I IYIENR M YRTPRNLKK L NVI DE G W RLL --------- DFK N HKVGE F I E KGY R TA R RHTG A Y I T ITQ 702
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 769 SFE D YFT --- SS VG RA LTA NS PW KII M KQ EKESIEAMKANNYFSTTDA E YERMKNIRTI K - RA FS EM L VRF EN FQEIC RL 844
Cdd:PRK13721 703 NIV D FDS dka SS AA RA AWG NS SY KII L KQ SAKEFAKYNQLYPDQFSPL E RDMIGGFGAA K d QW FS SF L LQV EN HSSWH RL 782
890
....*....|....*....
gi 1476633841 845 Y VD --- R K M elc FTT D ST D 860
Cdd:PRK13721 783 F VD pls R A M --- YSS D GP D 798
TraC_F_IV
pfam11130 TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a ...
15-258
2.50e-22
TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a cytoplasmic, peripheral membrane protein and is one of the proteins encoded by the F transfer region of the conjugative plasmid that is required for the assembly of F pilin into the mature F pilus structure. F pili are filamentous appendages that help establish the physical contact between donor and recipient cells involved in the conjugation process.
Pssm-ID: 431669 [Multi-domain]
Cd Length: 232
Bit Score: 96.58
E-value: 2.50e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 15 Q F GGFI P -- V YD qi P G T NY FL IDGNRL GF M F ICN P SP G VFDNQQ D V L AE L FKM D F P TD T IC Q TS L T A L PD LTLH L SAWSA 92
Cdd:pfam11130 2 S F SDLL P yv A YD -- P E T GL FL NEDGSV GF V F ELS P LG G ADESVR D T L ES L LSD D L P DG T PV Q FL L F A S PD IGPY L DRLRD 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 93 V R G G RME GH dk L KG dl LTAYQLDYY D RSLNEP L KP D H d KLM LR D F QIWM S FSI P L K SA LPT E IE in RIDA L YSD L ISK L N 172
Cdd:pfam11130 80 Y R L G EQG GH -- L RA -- IARPRGLFL D SGVTGS L SA D W - RGQ LR R F RLVL S RKV P G K AD LPT P IE -- ALNE L RDR L EAS L R 152
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 173 TL GL FPHKVSAENWLYCMDKLMH P gk TSRWAEGHVEVNTMRR - LN EQ LNVPGRKYT V TENNFSSTTQ stdvs E HR YFKQ L 251
Cdd:pfam11130 153 SA GL AARRLDPDDLIAWLRRWLN P -- DPSASWDPPADYDPDK d IA EQ ILDSDPRLD V EAGRLYFDGE ----- P HR AVRV L 225
....*..
gi 1476633841 252 S VVK FPE 258
Cdd:pfam11130 226 S LRR FPE 232
Name
Accession
Description
Interval
E-value
TraC-F-type
TIGR02746 type-IV secretion system protein TraC; The protein family described here is common among the F, ...
22-880
2.37e-114
type-IV secretion system protein TraC; The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Pssm-ID: 274279 [Multi-domain]
Cd Length: 797
Bit Score: 368.19
E-value: 2.37e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 22 V YD QI pg TNY F LIDGN r L GF MFICN P SP G VFDNQQDV L AE L FKM D F P TD T IC Q TS L TAL P DLTLH L SAWS avrggrm E GH 101
Cdd:TIGR02746 6 A YD EE -- SGI F MNRHS - M GF GLELT P LS G ADESLVES L SS L LRT D L P EG T DI Q VL L WGS P QIGPF L DRNE ------- E QF 75
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 102 DKLK G D L -- L TAYQLD YY DRSLNEPLK p DHDKLM LRDF QIWM S F SIP L KS al P T E IE I NRIDA L YSDLI S K L NTL G LFPH 179
Cdd:TIGR02746 76 SQNG G I L ek L ARNRVK YY LNAAQKGFF - KNSGVT LRDF RLFL S V SIP F KS -- P N E DV I QELRS L RERIE S T L RSA G FGCR 152
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 180 K V S AE NW L YCMDKLMH P GKT S RW a EGHVEVNTMRR L NE Q LNV P GRKYT V T E NNFSSTTQSTDVSEHRYFKQL S VVK FPE H 259
Cdd:TIGR02746 153 R V D AE DL L SLVREMLN P DPD S IH - PWPISYDPNQL L RD Q IVD P DTDLE V H E GGLEVDHEDNQGEVKTRIRVF S IKR FPE E 231
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 260 VNFGSMYE L VVNWM N GRKT I FS PF MITQ TV HFA D PL K L - A RDNVRY K AIT nk QASIPTVLTFC P R L KDMDNDYMAVTREL 338
Cdd:TIGR02746 232 FTLWQTGN L IGDLL N PSLQ I TC PF LLSF TV RVE D QV K K k A KATAKA K DLN -- KQAKSSMAKWV P S L EKKLKEIKYLREAI 309
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 339 ED G - AR L LHS Y LTFTVMG N SALDVQSAAD q L KS FYLESRVKV A D D SY I IFPS F VSC LP MCNDPKTIL DL DRFEV V --- S N 414
Cdd:TIGR02746 310 AS G g DS L VSM Y YNVLLFT N PDNLRRDVEA - A KS SFRKNGFDL A E D KR I QLQA F LAA LP FNPTEGLFE DL KKAGR V rtl S S 388
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 415 TG A AHMT PL FGP WKG n T DRPV L N L VS R E GQL LGL D I F KT - S AS YN MV V GAT SGAGKSF WVAYI I NNY L GA G prsnnlihy 493
Cdd:TIGR02746 389 AN A VNLL PL IAD WKG - T KGSG L L L PT R R GQL SAF D P F DS d S TN YN IA V VGG SGAGKSF FMQEL I VDN L SR G --------- 458
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 494 rdtfegfknnaydafdpdg AQIF V V DVGRSY QGIS E QY t NSQF I D F GKKPDFT LNPF AF ltdvtvadrvfdeapvfndds 573
Cdd:TIGR02746 459 ------------------- GKVW V I DVGRSY KKLC E ML - GGTY I E F SPESNIC LNPF TG --------------------- 497
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 574 n NN DE E K D KVA qt IMVLNQLKI MAS EK G NID D F Q Q S VMLQL I GDEY nes RKV G STGS IT GFARRCSAH E ---- D K RIKD I 649
Cdd:TIGR02746 498 - NN VT E I D DEI -- DQITALIAL MAS PE G GLS D E Q R S TLEEA I LAAW --- KEY G NEAT IT DVQDALQQL E dden D P RIKD L 571
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 650 G EQ L GQWCEG G I YG n R FTEKLPPIN F GS RF I VLELEEL KGT P H LQ T VVL M S IIQAAQHA M FIKKDG RR RLF I L DEAW EYI 729
Cdd:TIGR02746 572 G KM L NPYTSH G V YG - R YFNGPNNLD F SN RF V VLELEEL EDR P D LQ A VVL F S LMVRITGE M YLTPRK RR KIC I I DEAW SLL 650
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 730 R pdnasgssn QS N QFFSS F L E AAW RR F RK TNC A G I C ITQ SF ED YFT S SVG RA LT ANS P WKII MK Q EK ESI EAM KA N N Y F S 809
Cdd:TIGR02746 651 D --------- GA N PQAAD F I E TGY RR A RK YGG A F I T ITQ GI ED FYS S PEA RA AY ANS D WKII LR Q SA ESI AKL KA E N P F T 721
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1476633841 810 TTDA E YERM K NI RT I K R AFSE M L V R FENFQEIC RL Y VD RKMELC F T TD STDRGKLW E IQSRL d C S YG EAIE 880
Cdd:TIGR02746 722 FSPF E KRLI K SL RT A K G AFSE L L I R SGEGSSVH RL F VD PFSRVL F S TD GPEFEEVE E LREQG - L S LE EAIE 791
VirB4
COG3451 Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ...
246-870
2.37e-76
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain]
Cd Length: 546
Bit Score: 259.11
E-value: 2.37e-76
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 246 RY FKQ LS VVKF P EHVNF G smyelvvn WMNGRKTIFSP F MI TQ TVHFA D PLK l A RDNVRY K AITNKQASIPTVLTFCPRLK 325
Cdd:COG3451 8 RY GRV LS IKGY P SETSP G -------- LLDPLLQLPCE F IV TQ SFTPL D KDE - A LKKLKR K RRRLESKRKSEQALVDDDAE 78
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 326 DMDN D YMAVTR EL E - D G A RL LHSY LT F TV MGNSALDVQS A ADQLK S FYLESRVKVADDSYIIFPS F V S C LP MCN D PKT il 404
Cdd:COG3451 79 SQAE D AEEALD EL Q s G G E RL GEVH LT L TV FADDLEELEE A VREVE S ALQSAGFTLVRETLNQEEA F L S S LP GNF D YRL -- 156
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 405 dld R FEVVSNTGA A HMT P LFGPWK G n TDRPVLN L VS R E G QLLGL D IFKTSASY N MVVGAT SG A GKSF WVAYIINNY L GA G 484
Cdd:COG3451 157 --- R RRLLTTSNL A ALF P FHSFEL G - DPWGIYL L NT R S G TPVFF D FHDGLDNG N TLILGP SG S GKSF LLKLLLLQL L RY G 232
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 485 P R snnlihyrdtfegfknnaydafdpdgaq I FVV D V G R SY QGISEQY t NSQF ID FGKKPDFT LNPF AF ltdvtvadrvfd 564
Cdd:COG3451 233 A R ---------------------------- I VIF D P G G SY EILVRAL - GGTY ID LSPGSPTG LNPF DL ------------ 271
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 565 eapvfnddsnnn DEEKD K VA qti MV L NQ L KIMAS - E KGNIDDFQQSVMLQLIGDE Y NESRKVGS T g SITGFARRCS ah E D 643
Cdd:COG3451 272 ------------ EDTEE K RD --- FL L EL L ELLLG r E GEPLTPEERAAIDRAVRAL Y RRADPEER T - TLSDLYELLK -- E Q 333
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 644 KRI KD IGEQ L GQWCE GG I YG NR F TEK l PPINFG - S RF I V LE L E EL KGT P H L QTV VL MSIIQAAQHAMFIKK DGR RR L FIL 722
Cdd:COG3451 334 PEA KD LAAR L EPYTK GG S YG WL F DGP - TNLDLS d A RF V V FD L T EL LDN P E L RPP VL LYLLHRIWNRLRKNN DGR PT L IVI 412
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 723 DEAW EYIR pdnasgssnqs N QF F SS FLE AAWRRF RK T N C A G I CI TQS F ED YFT S SVGR A LTA NS PW KI IMK Q E K ES IE AM 802
Cdd:COG3451 413 DEAW LLLD ----------- N PA F AE FLE EWLKTL RK Y N G A V I FA TQS V ED FLS S PIAE A IIE NS AT KI LLP Q P K AD IE DY 481
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1476633841 803 K an NYFSTTDA E Y E RMKNIRTI KR A F sem L VRFE N FQEIC RL YVDRKMELCFT T DSTDRGK L W E IQSR 870
Cdd:COG3451 482 A -- ELLGLSER E L E LIRSAGRG KR D F --- L IKQG N GSVVF RL DLSPEELALLS T KPEEVAI L D E LRAE 544
PRK13721
PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
10-860
3.60e-44
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain]
Cd Length: 844
Bit Score: 172.21
E-value: 3.60e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 10 E L S RH QF GGFI P V -- YDQ IP G tny FLIDGNRL GFM FICN P SP G V fd N QQD V L A -- ELFKMDF P TDT icqtsltal P d L TL 85
Cdd:PRK13721 4 E M S FP QF SRLL P Y rd YDQ ES G --- LFMNDTTM GFM LEAI P LN G A -- N ESI V E A ld HMLRTKL P RGI --------- P - L CI 68
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 86 HL SA w S AVR G G R M E --- GHDKLK G DL --- LT A YQLD YY D R SLNE -- PL KPDHD - K L M LR DFQIWM S FSI P L K SA lp TEIE 156
Cdd:PRK13721 69 HL MS - S KLV G D R I E ygl REFSWS G EQ aer FN A ITRA YY M R AALT qf PL PEGMN l P L T LR HYRVFI S YCS P S K KK -- SRAD 145
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 157 I NRIDA L YSDLISK L NTLGLFPHK V S A ENWLYCMDKLMH -- P GKTSR w AEGHV ev NTMRR LN E Q LNVPGRKYT V TENNFS 234
Cdd:PRK13721 146 I LEMEN L VKIIRAS L QGASITTQT V D A QAFISIVREMIN hr P DSLYP - KRRQL -- DPYSD LN Y Q CVEDSFDLK V RADYLT 222
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 235 STTQSTDVSEHRYFKQLSVV K F PE HVNFGS M YELVV N WM N GRKT I FS PF MI T Q T VHFA D PL K LARDNVRYKAITN K QASI 314
Cdd:PRK13721 223 LGLRENGRNSTARILNFHLA K N PE IAFLWQ M ADNYS N LL N PELS I SC PF IL T L T LEVE D QV K TQSEANLKYMDLE K KSKT 302
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 315 PTVLT F c P RLKDMDNDYMAVTRE L EDGARL L H SY L ---- T F TVMG N SAL dv QSAADQLKSFYLESRVKVADDSYIIFPS F 390
Cdd:PRK13721 303 SYAKW F - P SVEKEAKEWGELRQR L GSNQSS L V SY F lnit A F CPDN N ETA -- LEVEQDILNSFRKNGFELISPRFNHMRN F 379
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 391 VS CLP MCNDPKTIL DL DRFE VV S --- NTGA A HMT PL F gpwkgn T D R P V ---- L NLVSREG QL LGL DIF KT --- SAS YNM V 460
Cdd:PRK13721 380 LT CLP FMAGEGLFK DL KEAG VV Q rae SFNV A NLM PL V ------ A D N P L tpag L LAPTYRN QL AFI DIF FR gmn NTN YNM A 453
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 461 V GA TSGAGK SFWVAYI I NNY L GA G prsnnlihyrdtfe GF knnaydafdpdgaq IF V V D V G RS Y QGIS E Q ---- Y TNSQF 536
Cdd:PRK13721 454 V CG TSGAGK TGLIQPL I RSV L DS G -------------- GF -------------- AV V F D M G DG Y KSLC E N mggv Y LDGET 505
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 537 ID F gkkpdftl NPFA FL TD V tvadrvfdeapvfnddsnnndeek D KV A QT I M vl N QL KI MAS EK GN I D DFQQSVM LQ LIG 616
Cdd:PRK13721 506 LR F -------- NPFA NI TD I ------------------------ D QS A ER I R -- D QL SV MAS PN GN L D EVHEGLL LQ AVR 551
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 617 DEYNESRKVGSTGSITG F ARRCSAH E --- D K ----- R IKDIGEQ L G Q WCEG G I YG NR F TEKL P PINFGS R FI VLEL EE L K 688
Cdd:PRK13721 552 ASWLAKKNRARIDDVVD F LKNARDS E qya D S ptirs R LDEMIVL L D Q YTAN G T YG EY F NSDE P SLRDDA R MV VLEL GG L E 631
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 689 GT P H L QTV V LM S I I QAAQHA M FIKKDGRRR L FIL DE A W EYI rpdnasgss NQS N QFFSS F L E AAW R RF R KTNC A G I C ITQ 768
Cdd:PRK13721 632 DR P S L LVA V MF S L I IYIENR M YRTPRNLKK L NVI DE G W RLL --------- DFK N HKVGE F I E KGY R TA R RHTG A Y I T ITQ 702
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 769 SFE D YFT --- SS VG RA LTA NS PW KII M KQ EKESIEAMKANNYFSTTDA E YERMKNIRTI K - RA FS EM L VRF EN FQEIC RL 844
Cdd:PRK13721 703 NIV D FDS dka SS AA RA AWG NS SY KII L KQ SAKEFAKYNQLYPDQFSPL E RDMIGGFGAA K d QW FS SF L LQV EN HSSWH RL 782
890
....*....|....*....
gi 1476633841 845 Y VD --- R K M elc FTT D ST D 860
Cdd:PRK13721 783 F VD pls R A M --- YSS D GP D 798
TraC_F_IV
pfam11130 TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a ...
15-258
2.50e-22
TraC protein; This family of TraC proteins is conserved in Proteobacteria. TraC is a cytoplasmic, peripheral membrane protein and is one of the proteins encoded by the F transfer region of the conjugative plasmid that is required for the assembly of F pilin into the mature F pilus structure. F pili are filamentous appendages that help establish the physical contact between donor and recipient cells involved in the conjugation process.
Pssm-ID: 431669 [Multi-domain]
Cd Length: 232
Bit Score: 96.58
E-value: 2.50e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 15 Q F GGFI P -- V YD qi P G T NY FL IDGNRL GF M F ICN P SP G VFDNQQ D V L AE L FKM D F P TD T IC Q TS L T A L PD LTLH L SAWSA 92
Cdd:pfam11130 2 S F SDLL P yv A YD -- P E T GL FL NEDGSV GF V F ELS P LG G ADESVR D T L ES L LSD D L P DG T PV Q FL L F A S PD IGPY L DRLRD 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 93 V R G G RME GH dk L KG dl LTAYQLDYY D RSLNEP L KP D H d KLM LR D F QIWM S FSI P L K SA LPT E IE in RIDA L YSD L ISK L N 172
Cdd:pfam11130 80 Y R L G EQG GH -- L RA -- IARPRGLFL D SGVTGS L SA D W - RGQ LR R F RLVL S RKV P G K AD LPT P IE -- ALNE L RDR L EAS L R 152
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 173 TL GL FPHKVSAENWLYCMDKLMH P gk TSRWAEGHVEVNTMRR - LN EQ LNVPGRKYT V TENNFSSTTQ stdvs E HR YFKQ L 251
Cdd:pfam11130 153 SA GL AARRLDPDDLIAWLRRWLN P -- DPSASWDPPADYDPDK d IA EQ ILDSDPRLD V EAGRLYFDGE ----- P HR AVRV L 225
....*..
gi 1476633841 252 S VVK FPE 258
Cdd:pfam11130 226 S LRR FPE 232
VirB4_CagE
TIGR00929 type IV secretion/conjugal transfer ATPase, VirB4 family; Type IV secretion systems are found ...
349-828
2.77e-19
type IV secretion/conjugal transfer ATPase, VirB4 family; Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Pssm-ID: 273346 [Multi-domain]
Cd Length: 785
Bit Score: 93.15
E-value: 2.77e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 349 L TFT V MGNSALDVQS A ADQLK S FYLESRVKVADDSYIIFPS F V S C LP m C N ------- DPK T ILDL drfevvsntga A HMT 421
Cdd:TIGR00929 325 L SLV V YAEDLEKLDA A LREAR S LLNACGIVAVIETLGLEAA F W S Q LP - G N fswnprk SLI T SRNF ----------- A SLI 392
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 422 P L ---- F G PWK GN T - DRPVLN L VSRE G QLLGLDIFKTS A SYN --- MVV G A T s G A GK SFWVAYIINN ylgagprsnnlihy 493
Cdd:TIGR00929 393 P F hnfn L G KLR GN P w GPALTL L KTQS G TPFYFNFHVRD A KVL ght LIF G P T - G S GK TTLLNFLLAQ -------------- 457
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 494 rdt FEGFKNNAYD AFD P D - G AQ IF VVDV G RS Y QG I S eqyt NSQ fidfgkkp D F TL NPF AFLT dv T VAD R V F deapvfndd 572
Cdd:TIGR00929 458 --- MQKYGGMTIF AFD K D r G ME IF IRAF G GA Y LE I K ---- DGE -------- P F GF NPF QLED -- T ERN R A F --------- 511
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 573 snnndeekdkvaqtim VLNQ L KIMASEK G N iddfqqsvml QL I GD E YNE -- S RKVGSTGSITGFA R RC S AHE --- D K RIK 647
Cdd:TIGR00929 512 ---------------- LKEW L AMLVTLD G S ---------- TD I SA E DRN al S SAIDTVYREGPLI R SL S DLL nfl P K DYI 565
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 648 D IGEQ L GQ W CE GG I YG NR F TEKLPPINF g S RFIVLE L E EL KGT P HLQ T V VLM SIIQAAQH A M fikk DGR RR L F I L DEAW E 727
Cdd:TIGR00929 566 D LADR L EP W LK GG D YG WL F DNPTDDLDL - S KITGFD L T EL LDN P KVA T P VLM YLFHRINE A L ---- DGR PF L I I I DEAW Q 640
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 728 Y IRPD nasgssnqsnq F F SSFLEAAWRRF RK T N CAGICI TQS FE D YFT S SVGRALTANSPW KI IMKQEKESI E AMKAN ny 807
Cdd:TIGR00929 641 Y LGNP ----------- V F AAKIRDWLKTL RK A N GIVVLA TQS IN D ALG S RIADSILEQCAT KI FLPNPEADR E DYAEG -- 707
490 500
....*....|....*....|.
gi 1476633841 808 F ST T DA E Y E RM K NIRTIK R A F 828
Cdd:TIGR00929 708 F KL T ER E F E LL K STPEES R K F 728
P-loop_TraG
pfam19044 TraG P-loop domain; This entry represents the P-loop domain found in the TraG conjugation ...
459-796
2.20e-08
TraG P-loop domain; This entry represents the P-loop domain found in the TraG conjugation protein.
Pssm-ID: 436917 [Multi-domain]
Cd Length: 413
Bit Score: 57.53
E-value: 2.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 459 MVV G a T SG A GKSF WV ayiinnylgagprs N NLIHY rdtfegfknn A Y D afdp D GA QIFV VDVG R SY Q G IS E ------- Q Y 531
Cdd:pfam19044 33 FIL G - P SG S GKSF FT -------------- N HMVRS ---------- Y Y E ---- Q GA HVVL VDVG H SY K G LC E lvggyyf T Y 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 532 TNSQF I D F gkkpdftl NPF a FLT D vtva DR V F D E apvfnddsnnnd E E K D kvaq T I MV L nqlk IM A SE K GNIDD F QQ S vm 611
Cdd:pfam19044 84 SEENP I R F -------- NPF - YIG D ---- GD V L D T ------------ E K K E ---- S I KT L ---- LL A LW K KDDES F TR S -- 128
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 612 lqligd EY nesrk V GSTGSI T GFARRCSAH ---------------------- E DKRI K ---- DI GE --- Q L GQWCE GG IY 662
Cdd:pfam19044 129 ------ EY ----- V ALSNAL T LYYEHLEKD pdifpcfntfyeflrdeylkvl E EDKV K ekdf DI DN fly V L RPYYK GG EF 197
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 663 G --- N R f TE K L PPI N fg S RFIV L EL EEL K GT P H L QT VV LMS I IQ aaqha M FI K K ---- D G R R RLFILD EAW EY I RPDN as 735
Cdd:pfam19044 198 D yll N A - TE N L DLL N -- E RFIV F EL DNI K DH P I L FP VV TII I ME ----- V FI S K mrkl K G I R KMILIE EAW KA I AKEG -- 267
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1476633841 736 gssnqsnqf FSSFLEAAWRRF RK TNCAG I CI TQ SFE D YFT S S - V GR A LTA NS PW KI IMK Q E K 796
Cdd:pfam19044 268 --------- MAEYIKYLFKTV RK FFGEA I VV TQ EVD D IIS S P i V KD A IIN NS DC KI LLD Q R K 320
DUF5934
pfam19357 Family of unknown function (DUF5934); This presumed domain found in type IV secretion system ...
320-429
2.27e-06
Family of unknown function (DUF5934); This presumed domain found in type IV secretion system proteins is functionally uncharacterized. This domain family is found in proteobacteria, and is approximately 170 amino acids in length. The family is found in association with pfam11130. There are two conserved sequence motifs: GWDL and QGEY.
Pssm-ID: 437189 [Multi-domain]
Cd Length: 172
Bit Score: 48.55
E-value: 2.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1476633841 320 F C P R LK DMDNDYMA V TR EL ED G AR L LHSY lt FT V MGN S ALDVQS A ADQ - LKS F Y LESRVKVA D DS Y IIFPSFVSCL P MCN 398
Cdd:pfam19357 51 F L P Q LK EQSAEWQH V QD EL RQ G RK L VRAF -- YS V TAF S PKGKGD A HER t LKS V Y KAAGWDLI D ER Y LQIMGLLAAM P LTL 128
90 100 110
....*....|....*....|....*....|....
gi 1476633841 399 DPKTIL DL D --- RF EVVSN T G AA HMT PL F G PWK G 429
Cdd:pfam19357 129 ADGLAS DL E rmk RF RTMLT T T AA NIA PL Q G EYL G 162
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
