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Conserved domains on  [gi|1464633030|gb|AXR76063|]
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cytochrome b, partial (mitochondrion) [Interochromis loocki]

Protein Classification

cytochrome b( domain architecture ID 1000003)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 12-140 1.18e-105

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 305.81  E-value: 1.18e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  12 MANLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIR 91
Cdd:MTH00131    1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1464633030  92 NMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFV 140
Cdd:MTH00131   81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFV 129
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 12-140 1.18e-105

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 305.81  E-value: 1.18e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  12 MANLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIR 91
Cdd:MTH00131    1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1464633030  92 NMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFV 140
Cdd:MTH00131   81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFV 129
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 20-140 5.84e-54

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 168.32  E-value: 5.84e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  20 PLLKIANDALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGAS 99
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1464633030 100 FFFICIYLHIGRGLYYGSY--LYKETWNIGVILLLLTMMTAFV 140
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFM 123
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
29-140 2.37e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 156.39  E-value: 2.37e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  29 LVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLH 108
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1464633030 109 IGRGLYYG--SYLYKETWNIGVILLLLTMMTAFV 140
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFI 114
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-139 7.23e-44

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 148.01  E-value: 7.23e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  12 MANLRKTHPLLKIAND---------ALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICR 82
Cdd:COG1290     1 MSTTKKASGLADWLDErlplaslvrEHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1464633030  83 DVNYGWLIRNMHANGASFFFICIYLHIGRGLYYGSylYKE----TWNIGVILLLLTMMTAF 139
Cdd:COG1290    81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAF 139
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 12-140 1.18e-105

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 305.81  E-value: 1.18e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  12 MANLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIR 91
Cdd:MTH00131    1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1464633030  92 NMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFV 140
Cdd:MTH00131   81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFV 129
CYTB MTH00119
cytochrome b; Provisional
 11-140 4.97e-91

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 268.69  E-value: 4.97e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  11 MMANLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLI 90
Cdd:MTH00119    1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1464633030  91 RNMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFV 140
Cdd:MTH00119   81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFV 130
CYTB MTH00100
cytochrome b; Provisional
 12-140 7.77e-90

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 265.35  E-value: 7.77e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  12 MANLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIR 91
Cdd:MTH00100    1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1464633030  92 NMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFV 140
Cdd:MTH00100   81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFM 129
CYTB MTH00074
cytochrome b; Provisional
 11-140 1.05e-89

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 265.39  E-value: 1.05e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  11 MMANLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLI 90
Cdd:MTH00074    1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1464633030  91 RNMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFV 140
Cdd:MTH00074   81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFV 130
CYTB MTH00191
cytochrome b; Provisional
 15-140 2.64e-87

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 258.69  E-value: 2.64e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  15 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMH 94
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1464633030  95 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFV 140
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFL 126
CYTB MTH00145
cytochrome b; Provisional
 11-140 1.80e-82

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 246.74  E-value: 1.80e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  11 MMANLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLI 90
Cdd:MTH00145    1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1464633030  91 RNMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFV 140
Cdd:MTH00145   81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFL 130
CYTB MTH00034
cytochrome b; Validated
 15-140 9.40e-82

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 245.00  E-value: 9.40e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  15 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMH 94
Cdd:MTH00034    4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1464633030  95 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFV 140
Cdd:MTH00034   84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFV 129
CYTB MTH00156
cytochrome b; Provisional
 22-139 3.65e-81

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 242.77  E-value: 3.65e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  22 LKIANDALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFF 101
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1464633030 102 FICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAF 139
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAF 118
CYTB MTH00016
cytochrome b; Validated
 11-140 9.97e-78

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 234.57  E-value: 9.97e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  11 MMANLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLI 90
Cdd:MTH00016    1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1464633030  91 RNMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFV 140
Cdd:MTH00016   81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFL 130
CYTB MTH00224
cytochrome b; Provisional
 11-140 8.60e-67

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 206.70  E-value: 8.60e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  11 MMANLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLI 90
Cdd:MTH00224    1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1464633030  91 RNMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFV 140
Cdd:MTH00224   81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFL 130
CYTB MTH00022
cytochrome b; Validated
 15-140 1.43e-63

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 198.39  E-value: 1.43e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  15 LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMH 94
Cdd:MTH00022    3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1464633030  95 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFV 140
Cdd:MTH00022   83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFM 128
CYTB MTH00053
cytochrome b; Provisional
 11-140 9.17e-58

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 183.75  E-value: 9.17e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  11 MMANLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLI 90
Cdd:MTH00053    1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1464633030  91 RNMHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFV 140
Cdd:MTH00053   81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFI 130
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 20-140 5.84e-54

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 168.32  E-value: 5.84e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  20 PLLKIANDALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGAS 99
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1464633030 100 FFFICIYLHIGRGLYYGSY--LYKETWNIGVILLLLTMMTAFV 140
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFM 123
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
29-140 2.37e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 156.39  E-value: 2.37e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  29 LVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLH 108
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1464633030 109 IGRGLYYG--SYLYKETWNIGVILLLLTMMTAFV 140
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFI 114
CYTB MTH00033
cytochrome b; Provisional
 15-140 1.03e-47

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 157.79  E-value: 1.03e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  15 LRKTHpLLKIANDaLVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMH 94
Cdd:MTH00033    3 LRKTG-LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1464633030  95 ANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAFV 140
Cdd:MTH00033   81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFI 126
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-139 7.23e-44

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 148.01  E-value: 7.23e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  12 MANLRKTHPLLKIAND---------ALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICR 82
Cdd:COG1290     1 MSTTKKASGLADWLDErlplaslvrEHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1464633030  83 DVNYGWLIRNMHANGASFFFICIYLHIGRGLYYGSylYKE----TWNIGVILLLLTMMTAF 139
Cdd:COG1290    81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAF 139
CYTB MTH00086
cytochrome b; Provisional
 26-139 5.71e-39

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 134.30  E-value: 5.71e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  26 NDALVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICI 105
Cdd:MTH00086    4 NSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFL 83

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1464633030 106 YLHIGRGLYYGSYLYKETWNIGVILLLLTMMTAF 139
Cdd:MTH00086   84 YLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAF 117
CYTB MTH00046
cytochrome b; Validated
 29-139 2.94e-23

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 92.74  E-value: 2.94e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  29 LVDLPAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLH 108
Cdd:MTH00046    9 LIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIH 88

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1464633030 109 IGRGLYYGSYLYKETWNIGVILLLLTMMTAF 139
Cdd:MTH00046   89 MGRALYYSSYSKKGVWNVGFILYLLVMVEAF 119
PRK03735 PRK03735
cytochrome b6; Provisional
 33-139 9.01e-20

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 81.30  E-value: 9.01e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  33 PAPSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHIGRG 112
Cdd:PRK03735   33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                          90       100
                  ....*....|....*....|....*....
gi 1464633030 113 LYYGSYLYKE--TWNIGVILLLLTMMTAF 139
Cdd:PRK03735  113 FFTGGYKKPRelNWVVGVLIFFVTVGLGF 141
petB CHL00070
cytochrome b6
 35-134 1.72e-13

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 64.36  E-value: 1.72e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1464633030  35 PSNISVWWNFGSLLGLCLAAQILTGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYLHIGRGLY 114
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100
                  ....*....|....*....|..
gi 1464633030 115 YGSYLYKE--TWNIGVILLLLT 134
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLT 128
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
99-140 6.97e-09

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 51.47  E-value: 6.97e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1464633030  99 SFFFICIYLHIGRGLYYGSYLYKE--TWNIGVILLLLTMMTAFV 140
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFT 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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