NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1405363518|gb|AWV56749|]
View 

gas vesicle structural protein, partial [Arthrospira sp. CH1]

Protein Classification

gas vesicle structural protein GvpA( domain architecture ID 10013203)

gas vesicle structural protein GvpA forms a water-excluding but gas-permeable protein wall with a hydrophobic inner and hydrophilic outer surface

Gene Symbol:  gvpA
Gene Ontology:  GO:0012506|GO:0033172
PubMed:  10894744

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK09371 PRK09371
gas vesicle structural protein GvpA;
4-71 2.51e-27

gas vesicle structural protein GvpA;


:

Pssm-ID: 181805  Cd Length: 68  Bit Score: 93.70  E-value: 2.51e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1405363518  4 EKVNSSSSLAEVIDRILDKGIVIDAWVRVSLVGIELLSVEARVVIASVETYLKYAEAVGLTAQAAVPS 71
Cdd:PRK09371   1 EKTPDSSSLAEVIDRILDKGIVVDAWVRVSLVGIELLAIEARVVVASVETYLKYAEAIGLTAQAAAPA 68
 
Name Accession Description Interval E-value
PRK09371 PRK09371
gas vesicle structural protein GvpA;
4-71 2.51e-27

gas vesicle structural protein GvpA;


Pssm-ID: 181805  Cd Length: 68  Bit Score: 93.70  E-value: 2.51e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1405363518  4 EKVNSSSSLAEVIDRILDKGIVIDAWVRVSLVGIELLSVEARVVIASVETYLKYAEAVGLTAQAAVPS 71
Cdd:PRK09371   1 EKTPDSSSLAEVIDRILDKGIVVDAWVRVSLVGIELLAIEARVVVASVETYLKYAEAIGLTAQAAAPA 68
Gas_vesicle pfam00741
Gas vesicle protein; This family includes gas vesicle proteins such as GvpJ.
 11-49 2.09e-10

Gas vesicle protein; This family includes gas vesicle proteins such as GvpJ.


Pssm-ID: 459920  Cd Length: 39  Bit Score: 50.10  E-value: 2.09e-10
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 1405363518 11 SLAEVIDRILDKGIVIDAWVRVSLVGIELLSVEARVVIA 49
Cdd:pfam00741  1 SLADLLDRLLDKGVVIDGDITISVAGIELLGIKLRLVLA 39
 
Name Accession Description Interval E-value
PRK09371 PRK09371
gas vesicle structural protein GvpA;
4-71 2.51e-27

gas vesicle structural protein GvpA;


Pssm-ID: 181805  Cd Length: 68  Bit Score: 93.70  E-value: 2.51e-27
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1405363518  4 EKVNSSSSLAEVIDRILDKGIVIDAWVRVSLVGIELLSVEARVVIASVETYLKYAEAVGLTAQAAVPS 71
Cdd:PRK09371   1 EKTPDSSSLAEVIDRILDKGIVVDAWVRVSLVGIELLAIEARVVVASVETYLKYAEAIGLTAQAAAPA 68
PRK09368 PRK09368
gas vesicle structural protein GvpA;
8-61 1.51e-24

gas vesicle structural protein GvpA;


Pssm-ID: 236485  Cd Length: 140  Bit Score: 88.58  E-value: 1.51e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1405363518   8 SSSSLAEVIDRILDKGIVIDAWVRVSLVGIELLSVEARVVIASVETYLKYAEAV 61
Cdd:PRK09368   13 GSGGLYDVLDLILDRGLVIDAFVRVSLVGIEILTIDARVVVASVDTYLRFAEAC 66
Gas_vesicle pfam00741
Gas vesicle protein; This family includes gas vesicle proteins such as GvpJ.
 11-49 2.09e-10

Gas vesicle protein; This family includes gas vesicle proteins such as GvpJ.


Pssm-ID: 459920  Cd Length: 39  Bit Score: 50.10  E-value: 2.09e-10
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 1405363518 11 SLAEVIDRILDKGIVIDAWVRVSLVGIELLSVEARVVIA 49
Cdd:pfam00741  1 SLADLLDRLLDKGVVIDGDITISVAGIELLGIKLRLVLA 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH