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Conserved domains on  [gi|1356636339|gb|AVL21442|]
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transposase (plasmid) [Enterobacter cloacae]

Protein Classification

transposase family protein( domain architecture ID 1750059)

transposase family protein might bind to the end of a transposon and catalyze the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0003677|GO:0006313
PubMed:  11774877

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
transpos_IS3 NF033516
IS3 family transposase;
8-259 1.66e-82

IS3 family transposase;


:

Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 252.10  E-value: 1.66e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339   8 GLSQRRACRLTGLSLSTCRYEAHRPAA-----DAHLSGRITELALERR-RFGYRRIWQLLRREGLHVNHKRVYRLYHLSG 81
Cdd:NF033516  100 EYSVRRACRVLGVSRSTYYYWRKRPPSrrapdDAELRARIREIFEESRgRYGYRRITALLRREGIRVNHKRVYRLMRELG 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339  82 LGVKRRR---RRKGLATERLPL--------LRPAAPNLTWSMDFVMDALSTGRrIKCLTCVDDFTKECLTVTVAFGISGV 150
Cdd:NF033516  180 LLARRRRkrrPYTTDSGHVHPVapnllnrqFTATRPNQVWVTDITYIRTAEGW-LYLAVVLDLFSREIVGWSVSTSMSAE 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339 151 QVSRILDSIALFRGYP--ATIRTDQGPEFTCRALDQWAFEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSNIV 228
Cdd:NF033516  259 LVLDALEMAIEWRGKPegLILHSDNGSQYTSKAYREWLKEHGITQSMSRPGNCWDNAVAESFFGTLKRECLYRRRFRTLE 338

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1356636339 229 HARKIINDWRQDYNECRPHSALNYQTPSEFA 259
Cdd:NF033516  339 EARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
 
Name Accession Description Interval E-value
transpos_IS3 NF033516
IS3 family transposase;
8-259 1.66e-82

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 252.10  E-value: 1.66e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339   8 GLSQRRACRLTGLSLSTCRYEAHRPAA-----DAHLSGRITELALERR-RFGYRRIWQLLRREGLHVNHKRVYRLYHLSG 81
Cdd:NF033516  100 EYSVRRACRVLGVSRSTYYYWRKRPPSrrapdDAELRARIREIFEESRgRYGYRRITALLRREGIRVNHKRVYRLMRELG 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339  82 LGVKRRR---RRKGLATERLPL--------LRPAAPNLTWSMDFVMDALSTGRrIKCLTCVDDFTKECLTVTVAFGISGV 150
Cdd:NF033516  180 LLARRRRkrrPYTTDSGHVHPVapnllnrqFTATRPNQVWVTDITYIRTAEGW-LYLAVVLDLFSREIVGWSVSTSMSAE 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339 151 QVSRILDSIALFRGYP--ATIRTDQGPEFTCRALDQWAFEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSNIV 228
Cdd:NF033516  259 LVLDALEMAIEWRGKPegLILHSDNGSQYTSKAYREWLKEHGITQSMSRPGNCWDNAVAESFFGTLKRECLYRRRFRTLE 338

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1356636339 229 HARKIINDWRQDYNECRPHSALNYQTPSEFA 259
Cdd:NF033516  339 EARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
6-264 2.03e-72

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 224.65  E-value: 2.03e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339   6 ATGLSQRRACRLTGLSLSTCRYEAHRPAADAHLSGRITELALERRRFGYRRIWQLLRREGLHVNHKRVYRLYHLSGL--- 82
Cdd:COG2801    41 RLLRLLRRRRARSRRRRRLRRPRSYRADEDAELLERIKEIFAESPRYGYRRITAELRREGIAVNRKRVRRLMRELGLqar 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339  83 --GVKRRRRRKGLATERLP--LLRPAAPNLTWSMDFVMDALSTGRrIKCLTCVDDFTKECLTVTVAFGISGVQVSRILDS 158
Cdd:COG2801   121 rrRKKKYTTYSGHGGPIAPnlLFTATAPNQVWVTDITYIPTAEGW-LYLAAVIDLFSREIVGWSVSDSMDAELVVDALEM 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339 159 IALFRGY--PATIRTDQGPEFTCRALDQWAFEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSNIVHARKIIND 236
Cdd:COG2801   200 AIERRGPpkPLILHSDNGSQYTSKAYQELLKKLGITQSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEE 279

                         250       260
                  ....*....|....*....|....*...
gi 1356636339 237 WRQDYNECRPHSALNYQTPSEFAARWRN 264
Cdd:COG2801   280 YIEFYNHERPHSSLGYLTPAEYEKQLAA 307
rve_3 pfam13683
Integrase core domain;
189-255 2.00e-37

Integrase core domain;


Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 126.56  E-value: 2.00e-37
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1356636339 189 HGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSNIVHARKIINDWRQDYNECRPHSALNYQTP 255
Cdd:pfam13683   1 LGIEISYIAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
transpos_IS481 NF033577
IS481 family transposase; null
 7-257 1.35e-30

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 115.38  E-value: 1.35e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339   7 TGLSQRRACRLTGLSLSTC-----RYEAH-------RPAADAHLSGRITE------LAL-ERRRFGYRRIWQLLRREGLH 67
Cdd:NF033577   12 DGWSVREAARRFGISRKTVykwlkRYRAGgeeglidRSRRPHRSPRRTSPeteariLALrRELRLGPRRIAYELERQGPG 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339  68 VNHKRVYRLYHLSGLgvkrrrrrkglatERLPLLRP----------AAPNLTWSMDFV-MDALSTGRRIKCLTCVDDFTK 136
Cdd:NF033577   92 VSRSTVHRILRRHGL-------------SRLRALDRktgkvkryerAHPGELWHIDIKkLGRIPDVGRLYLHTAIDDHSR 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339 137 ecltvtVAFgisgvqvSRILDS----------IALFRGYPATIR---TDQGPEFTCRA--LDQWAFEHGVELRLIQPGKP 201
Cdd:NF033577  159 ------FAY-------AELYPDetaetaadflRRAFAEHGIPIRrvlTDNGSEFRSRAhgFELALAELGIEHRRTRPYHP 225

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1356636339 202 TQNGFIESFNGRFRDECLNEHWFSNIVHARKIINDWRQDYNECRPHSALNYQTPSE 257
Cdd:NF033577  226 QTNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAE 281
PHA02517 PHA02517
putative transposase OrfB; Reviewed
 31-264 2.61e-17

putative transposase OrfB; Reviewed


Pssm-ID: 222853 [Multi-domain]  Cd Length: 277  Bit Score: 79.52  E-value: 2.61e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339  31 RPAADAHLSGRITEL-ALERRRFGYRRIWQLLRREGLHVNHKRVYRLYHLSGL-----GVKRRRRRKGLATERLPLLR-- 102
Cdd:PHA02517   24 RAQHDDWLKSEILRVyDENHQVYGVRKVWRQLNREGIRVARCTVGRLMKELGLagvlrGKKVRTTISRKAVAAPDRVNrq 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339 103 --PAAPNLTWSMDFVMdaLSTGRRIKCLTCVDD-FTKECLTVTVAFGISGVQVSRILDSIALFRGYPAT--IRTDQGPEF 177
Cdd:PHA02517  104 fvATRPNQLWVADFTY--VSTWQGWVYVAFIIDvFARRIVGWRVSSSMDTDFVLDALEQALWARGRPGGliHHSDKGSQY 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339 178 TCRALDQWAFEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSNIVHARKIINDWRQDYNECRPHSALNYQTPSE 257
Cdd:PHA02517  182 VSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERLGYTPPAE 261


                  ....*...
gi 1356636339 258 FAAR-WRN 264
Cdd:PHA02517  262 AEKAyYAS 269
 
Name Accession Description Interval E-value
transpos_IS3 NF033516
IS3 family transposase;
8-259 1.66e-82

IS3 family transposase;


Pssm-ID: 468052 [Multi-domain]  Cd Length: 369  Bit Score: 252.10  E-value: 1.66e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339   8 GLSQRRACRLTGLSLSTCRYEAHRPAA-----DAHLSGRITELALERR-RFGYRRIWQLLRREGLHVNHKRVYRLYHLSG 81
Cdd:NF033516  100 EYSVRRACRVLGVSRSTYYYWRKRPPSrrapdDAELRARIREIFEESRgRYGYRRITALLRREGIRVNHKRVYRLMRELG 179

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339  82 LGVKRRR---RRKGLATERLPL--------LRPAAPNLTWSMDFVMDALSTGRrIKCLTCVDDFTKECLTVTVAFGISGV 150
Cdd:NF033516  180 LLARRRRkrrPYTTDSGHVHPVapnllnrqFTATRPNQVWVTDITYIRTAEGW-LYLAVVLDLFSREIVGWSVSTSMSAE 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339 151 QVSRILDSIALFRGYP--ATIRTDQGPEFTCRALDQWAFEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSNIV 228
Cdd:NF033516  259 LVLDALEMAIEWRGKPegLILHSDNGSQYTSKAYREWLKEHGITQSMSRPGNCWDNAVAESFFGTLKRECLYRRRFRTLE 338

                         250       260       270
                  ....*....|....*....|....*....|.
gi 1356636339 229 HARKIINDWRQDYNECRPHSALNYQTPSEFA 259
Cdd:NF033516  339 EARQAIEEYIEFYNHERPHSSLGYLTPAEFE 369
Tra5 COG2801
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];
6-264 2.03e-72

Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons];


Pssm-ID: 442053 [Multi-domain]  Cd Length: 309  Bit Score: 224.65  E-value: 2.03e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339   6 ATGLSQRRACRLTGLSLSTCRYEAHRPAADAHLSGRITELALERRRFGYRRIWQLLRREGLHVNHKRVYRLYHLSGL--- 82
Cdd:COG2801    41 RLLRLLRRRRARSRRRRRLRRPRSYRADEDAELLERIKEIFAESPRYGYRRITAELRREGIAVNRKRVRRLMRELGLqar 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339  83 --GVKRRRRRKGLATERLP--LLRPAAPNLTWSMDFVMDALSTGRrIKCLTCVDDFTKECLTVTVAFGISGVQVSRILDS 158
Cdd:COG2801   121 rrRKKKYTTYSGHGGPIAPnlLFTATAPNQVWVTDITYIPTAEGW-LYLAAVIDLFSREIVGWSVSDSMDAELVVDALEM 199

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339 159 IALFRGY--PATIRTDQGPEFTCRALDQWAFEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSNIVHARKIIND 236
Cdd:COG2801   200 AIERRGPpkPLILHSDNGSQYTSKAYQELLKKLGITQSMSRPGNPQDNAFIESFFGTLKYELLYRRRFESLEEAREAIEE 279

                         250       260
                  ....*....|....*....|....*...
gi 1356636339 237 WRQDYNECRPHSALNYQTPSEFAARWRN 264
Cdd:COG2801   280 YIEFYNHERPHSSLGYLTPAEYEKQLAA 307
rve_3 pfam13683
Integrase core domain;
189-255 2.00e-37

Integrase core domain;


Pssm-ID: 433402 [Multi-domain]  Cd Length: 67  Bit Score: 126.56  E-value: 2.00e-37
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1356636339 189 HGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSNIVHARKIINDWRQDYNECRPHSALNYQTP 255
Cdd:pfam13683   1 LGIEISYIAPGKPMQNGLVESFNGTLRDECLNEHLFSSLAEARALLAAWREDYNTERPHSSLGYRTP 67
transpos_IS481 NF033577
IS481 family transposase; null
 7-257 1.35e-30

IS481 family transposase; null


Pssm-ID: 468094 [Multi-domain]  Cd Length: 283  Bit Score: 115.38  E-value: 1.35e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339   7 TGLSQRRACRLTGLSLSTC-----RYEAH-------RPAADAHLSGRITE------LAL-ERRRFGYRRIWQLLRREGLH 67
Cdd:NF033577   12 DGWSVREAARRFGISRKTVykwlkRYRAGgeeglidRSRRPHRSPRRTSPeteariLALrRELRLGPRRIAYELERQGPG 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339  68 VNHKRVYRLYHLSGLgvkrrrrrkglatERLPLLRP----------AAPNLTWSMDFV-MDALSTGRRIKCLTCVDDFTK 136
Cdd:NF033577   92 VSRSTVHRILRRHGL-------------SRLRALDRktgkvkryerAHPGELWHIDIKkLGRIPDVGRLYLHTAIDDHSR 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339 137 ecltvtVAFgisgvqvSRILDS----------IALFRGYPATIR---TDQGPEFTCRA--LDQWAFEHGVELRLIQPGKP 201
Cdd:NF033577  159 ------FAY-------AELYPDetaetaadflRRAFAEHGIPIRrvlTDNGSEFRSRAhgFELALAELGIEHRRTRPYHP 225

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1356636339 202 TQNGFIESFNGRFRDECLNEHWFSNIVHARKIINDWRQDYNECRPHSALNYQTPSE 257
Cdd:NF033577  226 QTNGKVERFHRTLKDEFAYARPYESLAELQAALDEWLHHYNHHRPHSALGGKTPAE 281
rve pfam00665
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ...
 106-201 1.40e-22

Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.


Pssm-ID: 459897 [Multi-domain]  Cd Length: 98  Bit Score: 89.30  E-value: 1.40e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339 106 PNLTWSMDFVMDALST-GRRIKCLTCVDDFTKECLTVTVAFGISGVQVSRILDSIALFRGY-PATIRTDQGPEFTCRALD 183
Cdd:pfam00665   1 PNQLWQGDFTYIRIPGgGGKLYLLVIVDDFSREILAWALSSEMDAELVLDALERAIAFRGGvPLIIHSDNGSEYTSKAFR 80

                          90
                  ....*....|....*...
gi 1356636339 184 QWAFEHGVELRLIQPGKP 201
Cdd:pfam00665  81 EFLKDLGIKPSFSRPGNP 98
PHA02517 PHA02517
putative transposase OrfB; Reviewed
 31-264 2.61e-17

putative transposase OrfB; Reviewed


Pssm-ID: 222853 [Multi-domain]  Cd Length: 277  Bit Score: 79.52  E-value: 2.61e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339  31 RPAADAHLSGRITEL-ALERRRFGYRRIWQLLRREGLHVNHKRVYRLYHLSGL-----GVKRRRRRKGLATERLPLLR-- 102
Cdd:PHA02517   24 RAQHDDWLKSEILRVyDENHQVYGVRKVWRQLNREGIRVARCTVGRLMKELGLagvlrGKKVRTTISRKAVAAPDRVNrq 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339 103 --PAAPNLTWSMDFVMdaLSTGRRIKCLTCVDD-FTKECLTVTVAFGISGVQVSRILDSIALFRGYPAT--IRTDQGPEF 177
Cdd:PHA02517  104 fvATRPNQLWVADFTY--VSTWQGWVYVAFIIDvFARRIVGWRVSSSMDTDFVLDALEQALWARGRPGGliHHSDKGSQY 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339 178 TCRALDQWAFEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSNIVHARKIINDWRQDYNECRPHSALNYQTPSE 257
Cdd:PHA02517  182 VSLAYTQRLKEAGIRASTGSRGDSYDNAPAESINGLYKAEVIHRVSWKNREEVELATLEWVAWYNNRRLHERLGYTPPAE 261


                  ....*...
gi 1356636339 258 FAAR-WRN 264
Cdd:PHA02517  262 AEKAyYAS 269
PRK09409 PRK09409
IS2 transposase TnpB; Reviewed
 31-269 2.47e-11

IS2 transposase TnpB; Reviewed


Pssm-ID: 181829 [Multi-domain]  Cd Length: 301  Bit Score: 62.81  E-value: 2.47e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339  31 RPAADAHLSGRITELALERRRFGYRRIWQLLRREGL-----HVNHKRVYRLYHLSGLgvkrrrrrkglATERLPLLRPAA 105
Cdd:PRK09409   45 RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAEldgmpAINAKRVYRIMRQNAL-----------LLERKPAVPPSK 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339 106 -----------PNLTWSMDFVMDALSTGRRIKCLTCVDDFTKECLTVTVAFGisGVQVSRILDSI--ALFRGY------- 165
Cdd:PRK09409  114 rahtgrvavkeSNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTG--GFNSETVQDVMlgAVERRFgndlpss 191

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339 166 PATIRTDQGPEFTCRALDQWAFEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSNIVHARKIINDWRQDYNECR 245
Cdd:PRK09409  192 PVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWH 271

                         250       260
                  ....*....|....*....|....
gi 1356636339 246 PHSALNYQTPSEFAarwRNGKCEG 269
Cdd:PRK09409  272 PHSALGYRSPREYL---RQRACNG 292
PRK14702 PRK14702
insertion element IS2 transposase InsD; Provisional
 31-269 9.42e-11

insertion element IS2 transposase InsD; Provisional


Pssm-ID: 237792 [Multi-domain]  Cd Length: 262  Bit Score: 60.90  E-value: 9.42e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339  31 RPAADAHLSGRITELALERRRFGYRRIWQLLRREGL-----HVNHKRVYRLYHLSGLgvkrrrrrkglATERLPLLRPAA 105
Cdd:PRK14702    6 RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAEldgmpAINAKRVYRLMRQNAL-----------LLERKPAVPPSK 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339 106 -----------PNLTWSMDFVMDALSTGRRIKCLTCVDDFTKECL---TVTVAFGISGVQvSRILDSIALFRG-----YP 166
Cdd:PRK14702   75 rahtgrvavkeSNQRWCSDGFEFCCDNGERLRVTFALDCCDREALhwaVTTGGFNSETVQ-DVMLGAVERRFGndlpsSP 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339 167 ATIRTDQGPEFTCRALDQWAFEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSNIVHARKIINDWRQDYNECRP 246
Cdd:PRK14702  154 VEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHP 233

                         250       260
                  ....*....|....*....|...
gi 1356636339 247 HSALNYQTPSEFAarwRNGKCEG 269
Cdd:PRK14702  234 HSALGYRSPREYL---RQRACNG 253
Tra8 COG2826
Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];
110-262 2.13e-10

Transposase and inactivated derivatives, IS30 family [Mobilome: prophages, transposons];


Pssm-ID: 442074 [Multi-domain]  Cd Length: 325  Bit Score: 60.28  E-value: 2.13e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339 110 WSMDFVMdalstGRRIKC--LTCVDDFTKECLTVTVAfGISGVQVSRILdsIALFRGYPATIR----TDQGPEFTCRalD 183
Cdd:COG2826   175 WEGDLII-----GKRGKSalLTLVERKSRFVILLKLP-DKTAESVADAL--IRLLRKLPAFLRksitTDNGKEFADH--K 244

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1356636339 184 QWAFEHGVELRLIQPGKPTQNGFIESFNGRFRDECLNEHWFSNIVHARkiINDWRQDYNEcRPHSALNYQTPSEFAARW 262
Cdd:COG2826   245 EIEAALGIKVYFADPYSPWQRGTNENTNGLLRQYFPKGTDFSTVTQEE--LDAIADRLNN-RPRKCLGYKTPAEVFAEE 320
HTH_21 pfam13276
HTH-like domain; This domain contains a predicted helix-turn-helix suggesting a DNA-binding ...
 33-82 4.37e-10

HTH-like domain; This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.


Pssm-ID: 463824 [Multi-domain]  Cd Length: 60  Bit Score: 54.50  E-value: 4.37e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1356636339  33 AADAHLSGRITELALE-RRRFGYRRIWQLLRREG-LHVNHKRVYRLYHLSGL 82
Cdd:pfam13276   1 ELEDELLEAIREIFEEsRGTYGYRRITAELRREGgIRVNRKRVARLMRELGL 52
Rve COG3316
Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];
166-263 8.41e-05

Transposase (or an inactivated derivative), DDE domain [Mobilome: prophages, transposons];


Pssm-ID: 442545 [Multi-domain]  Cd Length: 235  Bit Score: 42.97  E-value: 8.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1356636339 166 PATIRTDQGPEFTcRALDQWAFEHGVELRLIQpGKPTQNGfIESFNGRFRDeclNE---HWFSNIVHARKIINDWRQDYN 242
Cdd:COG3316   128 PRVIVTDKLPSYG-AALRELKPEGGLGVEHRQ-VKGLNNR-IERDHRTLKR---RErpmRGFKSFRTAQRFLSGFEAYYN 201

                          90       100
                  ....*....|....*....|....*
gi 1356636339 243 ECRPHSALNYQTPSE----FAARWR 263
Cdd:COG3316   202 FRRPHRSLNGATPARvaraAASKWG 226
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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