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Conserved domains on  [gi|1315203925|gb|AUG72357|]
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MYB-like transcriptional factor AN2, partial [Solanum lycopersicum]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 1000535)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein may be involved in the regulation of gene expression

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03212 super family cl31985
Transcription repressor MYB5; Provisional
 2-122 1.12e-52

Transcription repressor MYB5; Provisional


The actual alignment was detected with superfamily member PLN03212:

Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 171.80  E-value: 1.12e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315203925   2 TPMCASLGVRKGSWTEQEDSLLRNCIQKYGEGKWHLVPARAGLNRCRKSCRLRWLNYLRPHIKRGDFAPDEVDLILRLHK 81
Cdd:PLN03212   15 TPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHR 94

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1315203925  82 LLGNRWSLIAGRLPGRTANDVKNYWNTHFHKKL--SIIAPHLH 122
Cdd:PLN03212   95 LLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLlrQGIDPQTH 137
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 2-122 1.12e-52

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 171.80  E-value: 1.12e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315203925   2 TPMCASLGVRKGSWTEQEDSLLRNCIQKYGEGKWHLVPARAGLNRCRKSCRLRWLNYLRPHIKRGDFAPDEVDLILRLHK 81
Cdd:PLN03212   15 TPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHR 94

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1315203925  82 LLGNRWSLIAGRLPGRTANDVKNYWNTHFHKKL--SIIAPHLH 122
Cdd:PLN03212   95 LLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLlrQGIDPQTH 137
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 12-107 1.57e-14

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 72.90  E-value: 1.57e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315203925  12 KGSWTEQEDSLLRNCIQKYGEGKWHLVPARAGLnRCRKSCRLRWLNYLRPHIKRGDFAPDEVDLILRLHKLLGNRWSLIA 91
Cdd:COG5147    20 GGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIA 98

                          90
                  ....*....|....*.
gi 1315203925  92 GRLPGRTANDVKNYWN 107
Cdd:COG5147    99 DYKDRRTAQQCVERYV 114
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 65-110 5.65e-13

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 61.75  E-value: 5.65e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1315203925  65 RGDFAPDEVDLILRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHF 110
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
12-61 9.40e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 56.08  E-value: 9.40e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1315203925   12 KGSWTEQEDSLLRNCIQKYGEGKWHLVPARAGlNRCRKSCRLRWLNYLRP 61
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 14-59 5.84e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 53.73  E-value: 5.84e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1315203925  14 SWTEQEDSLLRNCIQKYGEGKWHLVPARAGlNRCRKSCRLRWLNYL 59
Cdd:cd00167     1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 2-122 1.12e-52

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 171.80  E-value: 1.12e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315203925   2 TPMCASLGVRKGSWTEQEDSLLRNCIQKYGEGKWHLVPARAGLNRCRKSCRLRWLNYLRPHIKRGDFAPDEVDLILRLHK 81
Cdd:PLN03212   15 TPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHR 94

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1315203925  82 LLGNRWSLIAGRLPGRTANDVKNYWNTHFHKKL--SIIAPHLH 122
Cdd:PLN03212   95 LLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLlrQGIDPQTH 137
PLN03091 PLN03091
hypothetical protein; Provisional
 5-114 5.90e-42

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 149.36  E-value: 5.90e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315203925   5 CASLGVRKGSWTEQEDSLLRNCIQKYGEGKWHLVPARAGLNRCRKSCRLRWLNYLRPHIKRGDFAPDEVDLILRLHKLLG 84
Cdd:PLN03091    7 CYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLG 86

                          90       100       110
                  ....*....|....*....|....*....|
gi 1315203925  85 NRWSLIAGRLPGRTANDVKNYWNTHFHKKL 114
Cdd:PLN03091   87 NRWSQIAAQLPGRTDNEIKNLWNSCLKKKL 116
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 12-107 1.57e-14

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 72.90  E-value: 1.57e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315203925  12 KGSWTEQEDSLLRNCIQKYGEGKWHLVPARAGLnRCRKSCRLRWLNYLRPHIKRGDFAPDEVDLILRLHKLLGNRWSLIA 91
Cdd:COG5147    20 GGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIA 98

                          90
                  ....*....|....*.
gi 1315203925  92 GRLPGRTANDVKNYWN 107
Cdd:COG5147    99 DYKDRRTAQQCVERYV 114
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 65-110 5.65e-13

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 61.75  E-value: 5.65e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1315203925  65 RGDFAPDEVDLILRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHF 110
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 12-59 2.79e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 57.13  E-value: 2.79e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1315203925  12 KGSWTEQEDSLLRNCIQKYGeGKWHLVPARAGlNRCRKSCRLRWLNYL 59
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLP-GRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
12-61 9.40e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 56.08  E-value: 9.40e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1315203925   12 KGSWTEQEDSLLRNCIQKYGEGKWHLVPARAGlNRCRKSCRLRWLNYLRP 61
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 14-59 5.84e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 53.73  E-value: 5.84e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1315203925  14 SWTEQEDSLLRNCIQKYGEGKWHLVPARAGlNRCRKSCRLRWLNYL 59
Cdd:cd00167     1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
65-112 3.28e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 51.84  E-value: 3.28e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1315203925   65 RGDFAPDEVDLILRLHKLLG-NRWSLIAGRLPGRTANDVKNYWNTHFHK 112
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 70-110 6.14e-09

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 50.65  E-value: 6.14e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1315203925  70 PDEVDLILRLHKLLG-NRWSLIAGRLPGRTANDVKNYWNTHF 110
Cdd:cd00167     4 EEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 15-73 5.72e-07

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 45.76  E-value: 5.72e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1315203925  15 WTEQEDSLLRNCIQKYGeGKWHLVpARAGLNRCRKSCRLRWLNYLRPHIKRGDFAPDEV 73
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQI-AKELGRRTPKQCFDRWRRKLNPKISRGPWSKEED 57
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 68-115 1.25e-05

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 41.91  E-value: 1.25e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1315203925  68 FAPDEVDLILRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHFHKKLS 115
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKIS 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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