|
Name |
Accession |
Description |
Interval |
E-value |
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1-958 |
5.90e-75 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 259.31 E-value: 5.90e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 1 MIIKSLEIYGYGQFVHRKIEFNRAFTEIYGENEAGKSTIQAFIHSILFgfptkkekeprleprlgnqyggklalilddns 80
Cdd:COG4717 1 MKIKELEIYGFGKFRDRTIEFSPGLNVIYGPNEAGKSTLLAFIRAMLL-------------------------------- 48
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 81 tievervkgraqgdvkvflengtikdeawlnaklnhinkktyqgifsfdvlglqdihrnlnetqlqsylleagalgstef 160
Cdd:COG4717 --------------------------------------------------------------------------------
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 161 ghmgEVISQKKEELYKKSGKNPILNqqLAQLKGLEAQIRDEEAKLTDYHRYVDDKDKSSRHLAHLKDNLSQLSSMHAAKQ 240
Cdd:COG4717 49 ----ERLEKEADELFKPQGRKPELN--LKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE 122
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 241 KEVALHEQTQEWKELEGKLNIEPltfpeqgidryeaakgykqtleqeiglkeealkqltkenkqlsvpnddtiEQFKQIY 320
Cdd:COG4717 123 KLLQLLPLYQELEALEAELAELP--------------------------------------------------ERLEELE 152
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 321 REESDIKQSEIELNARAKEISEKQHAQQEHKTsvgwqeihhdtDTSEAAKSYASYLIKARQEEQIQQQHLTRLIDENTIE 400
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQEELEELLE-----------QLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE 221
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 401 QTALVKEIEALEQDLISEdalakkkqynqqklelnekenlyqklkdtfenEKANKIKRQQWLRFSF-VLLAIVGIALAVF 479
Cdd:COG4717 222 LEELEEELEQLENELEAA--------------------------------ALEERLKEARLLLLIAaALLALLGLGGSLL 269
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 480 SFMTqnMIFTVVFAVLTLIFIVGIFLAKAKTVdysetigieiqdleqqlnylendydldfdleeqyqlrdqwqnalknkt 559
Cdd:COG4717 270 SLIL--TIAGVLFLVLGLLALLFLLLAREKAS------------------------------------------------ 299
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 560 iidekMKHQQDKLSSSHQQLDRHEHDINEVKQSLFLPTKMSDDLLLDSIKTINTIKSDdkllqtlqqdyshlndkitsfy 639
Cdd:COG4717 300 -----LGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQEL---------------------- 352
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 640 eqakstvqpeierfnrssffddlkdwistsesnRQRKAELNKQITLLNNEltqlhanlaentATIDTLFNFIGVNDEESY 719
Cdd:COG4717 353 ---------------------------------LREAEELEEELQLEELE------------QEIAALLAEAGVEDEEEL 387
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 720 YAHHKAYQTYQQNLARFNDLTKYLENQNYSYEdsSALSKKTTAQLDKEDQVLAKQVDDYNEQFLAKQQEVSDLTAQIKHM 799
Cdd:COG4717 388 RAALEQAEEYQELKEELEELEEQLEELLGELE--ELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQL 465
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 800 ETDSTLSDLRHEYHSLKNQMNEIAKDWASLSYLQALVNEHIKQIKDKRLPQVIKEATNIFNKLTNAAYVQITYADD-KIM 878
Cdd:COG4717 466 EEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPVLERASEYFSRLTDGRYRLIRIDEDlSLK 545
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 879 VKHHNGQVFEPMELSQSTKEILYISLRLSLIKVLKPyYHLPIIVDDAFVHFDKKRKRIMLNYLRDLAENHQVLYFTCTKD 958
Cdd:COG4717 546 VDTEDGRTRPVEELSRGTREQLYLALRLALAELLAG-EPLPLILDDAFVNFDDERLRAALELLAELAKGRQVIYFTCHEE 624
|
|
| AAA_27 |
pfam13514 |
AAA domain; This domain is found in a number of double-strand DNA break proteins. This domain ... |
1-200 |
1.32e-21 |
|
AAA domain; This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif.
Pssm-ID: 433272 [Multi-domain] Cd Length: 207 Bit Score: 93.77 E-value: 1.32e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 1 MIIKSLEIYGYGQFVHRKIEFNRA---FTEIYGENEAGKSTIQAFIHSILFGFPTKKE---KEPRLEPRLGnqyggklAL 74
Cdd:pfam13514 1 MRIRRLDLERYGPFTDRSLDFPAGgpdLHLIYGPNEAGKSTALRAISDLLFGIPLRTPynfLHDYSDLRIG-------AT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 75 ILD-DNSTIEVERVKGRAQgdvKVFLENGTIKDEAWLNAKLNHINKKTYQGIFSFD----VLGLQDIhrnLN-ETQLQSY 148
Cdd:pfam13514 74 LENaDGETLEFRRRKGRKN---TLLDADGQPLPDDVLAPFLGGLDRETFERMFGLDherlREGGEAI---LEaEGDLGQA 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1230885120 149 LLEAGAlGSTEFGHMGEVISQKKEELYKKSGKNPI-LNQQLAQLKGLEAQIRD 200
Cdd:pfam13514 148 LFAAGS-GLAGLRRVLEALDAEADALFKPRGSSPRaFNQALARLDEAQRELRE 199
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
183-829 |
4.22e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 4.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 183 ILNQQLAQLKGLEAQIRdeeaKLTDYHRYVDDKDKSSRHLA-----HLKDNLSQLSSMHAAKQKEvaLHEQTQEWKELEG 257
Cdd:TIGR02168 194 ILNELERQLKSLERQAE----KAERYKELKAELRELELALLvlrleELREELEELQEELKEAEEE--LEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 258 KLNIEPLTFPE--------QGidRYEAAKGYKQTLEQEIGLKEEALKQLTKENKQLSVPNDDTiEQFKQIYREESD---- 325
Cdd:TIGR02168 268 KLEELRLEVSEleeeieelQK--ELYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL-ESKLDELAEELAelee 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 326 -IKQSEIELNARAKEISEKQHAQQEHKTSVGWQEIHHDT------DTSEAAKSYASYLIKARQEEQIQQQHLTRLIDENT 398
Cdd:TIGR02168 345 kLEELKEELESLEAELEELEAELEELESRLEELEEQLETlrskvaQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 399 ----------------------IEQTALVKEIEALEQDLISEDA---------LAKKKQYNQQKLELNEKENLYQKLKDT 447
Cdd:TIGR02168 425 ellkkleeaelkelqaeleeleEELEELQEELERLEEALEELREeleeaeqalDAAERELAQLQARLDSLERLQENLEGF 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 448 FENEKANKIKRQQ--------WLRFSF--------------VLLAIVG----IALAVFSFMTQNMIFTVVFAVLTLI--- 498
Cdd:TIGR02168 505 SEGVKALLKNQSGlsgilgvlSELISVdegyeaaieaalggRLQAVVVenlnAAKKAIAFLKQNELGRVTFLPLDSIkgt 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 499 FIVGIFLAKAKTVDYSETIGIEIQ----DLEQQLNYLENDY----DLDFDLEEQYQLRDQW------------------- 551
Cdd:TIGR02168 585 EIQGNDREILKNIEGFLGVAKDLVkfdpKLRKALSYLLGGVlvvdDLDNALELAKKLRPGYrivtldgdlvrpggvitgg 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 552 -----QNALKNKTIIDE---KMKHQQDKLSSSHQQLDRHEHDINEVKQSLFLPTKMSDDLLLDSIKTINTIKSDDKLLQT 623
Cdd:TIGR02168 665 saktnSSILERRREIEEleeKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 624 LQQDYSHLNDKITSFYEQAKSTVQPEIErfNRSSFFDDLKDWISTSESNRQRKAELN---KQITLLNNELTQLHANLAEN 700
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEE--AEEELAEAEAEIEELEAQIEQLKEELKalrEALDELRAELTLLNEEAANL 822
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 701 TATIDTLFNfigvndeesyyAHHKAYQTYQQNLARFNDLTKYLENQNYSYEDSSALSKKTTAQLDKEDQVLAKQvddyNE 780
Cdd:TIGR02168 823 RERLESLER-----------RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL----EE 887
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 1230885120 781 QFLAKQQEVSDLTAQIKhmETDSTLSDLRHEYHSLKNQMNEIAKDWASL 829
Cdd:TIGR02168 888 ALALLRSELEELSEELR--ELESKRSELRRELEELREKLAQLELRLEGL 934
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
2-100 |
1.28e-06 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 50.01 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 2 IIKSLEIYGYGQFVHR-KIEFNRAFTEIYGENEAGKSTIQAFIHSILFGfptkkekeprlEPRLGNQYGGKLALILDDNS 80
Cdd:COG0419 1 KLLRLRLENFRSYRDTeTIDFDDGLNLIVGPNGAGKSTILEAIRYALYG-----------KARSRSKLRSDLINVGSEEA 69
|
90 100
....*....|....*....|....*...
gi 1230885120 81 TIEVE--------RVKgRAQGDVKVFLE 100
Cdd:COG0419 70 SVELEfehggkryRIE-RRQGEFAEFLE 96
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
282-433 |
4.61e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 40.45 E-value: 4.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 282 QTLEQEIGLKEEALKQltkENKQLSVPNDDTIEQFKQIYREESDIKQSEIELNARAKEIS---------EKQHAQQEHKT 352
Cdd:PRK11637 50 KSIQQDIAAKEKSVRQ---QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDelnasiaklEQQQAAQERLL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 353 S------------VGWQEI--HHDTDTSEAAKSYASYLIKARQE--EQIQQqhlTRlidentieqTALVKEIEALEQDLI 416
Cdd:PRK11637 127 AaqldaafrqgehTGLQLIlsGEESQRGERILAYFGYLNQARQEtiAELKQ---TR---------EELAAQKAELEEKQS 194
|
170
....*....|....*..
gi 1230885120 417 SEDALAKKKQYNQQKLE 433
Cdd:PRK11637 195 QQKTLLYEQQAQQQKLE 211
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1-958 |
5.90e-75 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 259.31 E-value: 5.90e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 1 MIIKSLEIYGYGQFVHRKIEFNRAFTEIYGENEAGKSTIQAFIHSILFgfptkkekeprleprlgnqyggklalilddns 80
Cdd:COG4717 1 MKIKELEIYGFGKFRDRTIEFSPGLNVIYGPNEAGKSTLLAFIRAMLL-------------------------------- 48
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 81 tievervkgraqgdvkvflengtikdeawlnaklnhinkktyqgifsfdvlglqdihrnlnetqlqsylleagalgstef 160
Cdd:COG4717 --------------------------------------------------------------------------------
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 161 ghmgEVISQKKEELYKKSGKNPILNqqLAQLKGLEAQIRDEEAKLTDYHRYVDDKDKSSRHLAHLKDNLSQLSSMHAAKQ 240
Cdd:COG4717 49 ----ERLEKEADELFKPQGRKPELN--LKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE 122
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 241 KEVALHEQTQEWKELEGKLNIEPltfpeqgidryeaakgykqtleqeiglkeealkqltkenkqlsvpnddtiEQFKQIY 320
Cdd:COG4717 123 KLLQLLPLYQELEALEAELAELP--------------------------------------------------ERLEELE 152
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 321 REESDIKQSEIELNARAKEISEKQHAQQEHKTsvgwqeihhdtDTSEAAKSYASYLIKARQEEQIQQQHLTRLIDENTIE 400
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQEELEELLE-----------QLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE 221
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 401 QTALVKEIEALEQDLISEdalakkkqynqqklelnekenlyqklkdtfenEKANKIKRQQWLRFSF-VLLAIVGIALAVF 479
Cdd:COG4717 222 LEELEEELEQLENELEAA--------------------------------ALEERLKEARLLLLIAaALLALLGLGGSLL 269
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 480 SFMTqnMIFTVVFAVLTLIFIVGIFLAKAKTVdysetigieiqdleqqlnylendydldfdleeqyqlrdqwqnalknkt 559
Cdd:COG4717 270 SLIL--TIAGVLFLVLGLLALLFLLLAREKAS------------------------------------------------ 299
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 560 iidekMKHQQDKLSSSHQQLDRHEHDINEVKQSLFLPTKMSDDLLLDSIKTINTIKSDdkllqtlqqdyshlndkitsfy 639
Cdd:COG4717 300 -----LGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQEL---------------------- 352
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 640 eqakstvqpeierfnrssffddlkdwistsesnRQRKAELNKQITLLNNEltqlhanlaentATIDTLFNFIGVNDEESY 719
Cdd:COG4717 353 ---------------------------------LREAEELEEELQLEELE------------QEIAALLAEAGVEDEEEL 387
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 720 YAHHKAYQTYQQNLARFNDLTKYLENQNYSYEdsSALSKKTTAQLDKEDQVLAKQVDDYNEQFLAKQQEVSDLTAQIKHM 799
Cdd:COG4717 388 RAALEQAEEYQELKEELEELEEQLEELLGELE--ELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQL 465
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 800 ETDSTLSDLRHEYHSLKNQMNEIAKDWASLSYLQALVNEHIKQIKDKRLPQVIKEATNIFNKLTNAAYVQITYADD-KIM 878
Cdd:COG4717 466 EEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPVLERASEYFSRLTDGRYRLIRIDEDlSLK 545
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 879 VKHHNGQVFEPMELSQSTKEILYISLRLSLIKVLKPyYHLPIIVDDAFVHFDKKRKRIMLNYLRDLAENHQVLYFTCTKD 958
Cdd:COG4717 546 VDTEDGRTRPVEELSRGTREQLYLALRLALAELLAG-EPLPLILDDAFVNFDDERLRAALELLAELAKGRQVIYFTCHEE 624
|
|
| AAA_27 |
pfam13514 |
AAA domain; This domain is found in a number of double-strand DNA break proteins. This domain ... |
1-200 |
1.32e-21 |
|
AAA domain; This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif.
Pssm-ID: 433272 [Multi-domain] Cd Length: 207 Bit Score: 93.77 E-value: 1.32e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 1 MIIKSLEIYGYGQFVHRKIEFNRA---FTEIYGENEAGKSTIQAFIHSILFGFPTKKE---KEPRLEPRLGnqyggklAL 74
Cdd:pfam13514 1 MRIRRLDLERYGPFTDRSLDFPAGgpdLHLIYGPNEAGKSTALRAISDLLFGIPLRTPynfLHDYSDLRIG-------AT 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 75 ILD-DNSTIEVERVKGRAQgdvKVFLENGTIKDEAWLNAKLNHINKKTYQGIFSFD----VLGLQDIhrnLN-ETQLQSY 148
Cdd:pfam13514 74 LENaDGETLEFRRRKGRKN---TLLDADGQPLPDDVLAPFLGGLDRETFERMFGLDherlREGGEAI---LEaEGDLGQA 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1230885120 149 LLEAGAlGSTEFGHMGEVISQKKEELYKKSGKNPI-LNQQLAQLKGLEAQIRD 200
Cdd:pfam13514 148 LFAAGS-GLAGLRRVLEALDAEADALFKPRGSSPRaFNQALARLDEAQRELRE 199
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
183-829 |
4.22e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 4.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 183 ILNQQLAQLKGLEAQIRdeeaKLTDYHRYVDDKDKSSRHLA-----HLKDNLSQLSSMHAAKQKEvaLHEQTQEWKELEG 257
Cdd:TIGR02168 194 ILNELERQLKSLERQAE----KAERYKELKAELRELELALLvlrleELREELEELQEELKEAEEE--LEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 258 KLNIEPLTFPE--------QGidRYEAAKGYKQTLEQEIGLKEEALKQLTKENKQLSVPNDDTiEQFKQIYREESD---- 325
Cdd:TIGR02168 268 KLEELRLEVSEleeeieelQK--ELYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL-ESKLDELAEELAelee 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 326 -IKQSEIELNARAKEISEKQHAQQEHKTSVGWQEIHHDT------DTSEAAKSYASYLIKARQEEQIQQQHLTRLIDENT 398
Cdd:TIGR02168 345 kLEELKEELESLEAELEELEAELEELESRLEELEEQLETlrskvaQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 399 ----------------------IEQTALVKEIEALEQDLISEDA---------LAKKKQYNQQKLELNEKENLYQKLKDT 447
Cdd:TIGR02168 425 ellkkleeaelkelqaeleeleEELEELQEELERLEEALEELREeleeaeqalDAAERELAQLQARLDSLERLQENLEGF 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 448 FENEKANKIKRQQ--------WLRFSF--------------VLLAIVG----IALAVFSFMTQNMIFTVVFAVLTLI--- 498
Cdd:TIGR02168 505 SEGVKALLKNQSGlsgilgvlSELISVdegyeaaieaalggRLQAVVVenlnAAKKAIAFLKQNELGRVTFLPLDSIkgt 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 499 FIVGIFLAKAKTVDYSETIGIEIQ----DLEQQLNYLENDY----DLDFDLEEQYQLRDQW------------------- 551
Cdd:TIGR02168 585 EIQGNDREILKNIEGFLGVAKDLVkfdpKLRKALSYLLGGVlvvdDLDNALELAKKLRPGYrivtldgdlvrpggvitgg 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 552 -----QNALKNKTIIDE---KMKHQQDKLSSSHQQLDRHEHDINEVKQSLFLPTKMSDDLLLDSIKTINTIKSDDKLLQT 623
Cdd:TIGR02168 665 saktnSSILERRREIEEleeKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 624 LQQDYSHLNDKITSFYEQAKSTVQPEIErfNRSSFFDDLKDWISTSESNRQRKAELN---KQITLLNNELTQLHANLAEN 700
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEE--AEEELAEAEAEIEELEAQIEQLKEELKalrEALDELRAELTLLNEEAANL 822
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 701 TATIDTLFNfigvndeesyyAHHKAYQTYQQNLARFNDLTKYLENQNYSYEDSSALSKKTTAQLDKEDQVLAKQvddyNE 780
Cdd:TIGR02168 823 RERLESLER-----------RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL----EE 887
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 1230885120 781 QFLAKQQEVSDLTAQIKhmETDSTLSDLRHEYHSLKNQMNEIAKDWASL 829
Cdd:TIGR02168 888 ALALLRSELEELSEELR--ELESKRSELRRELEELREKLAQLELRLEGL 934
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
2-100 |
1.28e-06 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 50.01 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 2 IIKSLEIYGYGQFVHR-KIEFNRAFTEIYGENEAGKSTIQAFIHSILFGfptkkekeprlEPRLGNQYGGKLALILDDNS 80
Cdd:COG0419 1 KLLRLRLENFRSYRDTeTIDFDDGLNLIVGPNGAGKSTILEAIRYALYG-----------KARSRSKLRSDLINVGSEEA 69
|
90 100
....*....|....*....|....*...
gi 1230885120 81 TIEVE--------RVKgRAQGDVKVFLE 100
Cdd:COG0419 70 SVELEfehggkryRIE-RRQGEFAEFLE 96
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
184-850 |
3.19e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.12 E-value: 3.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 184 LNQQLAQLKGLEAQIRDEEAKLTDYHRYVDDKDKSSRHLAHLKDNLSQLSSMHAAKQKEVALHEQTQEWKELEGK----- 258
Cdd:TIGR00618 217 YHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKaapla 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 259 LNIEPLTFPEQGIDR-YEAAKGYKQTLEQEIGLKEEALKQltkenkQLSVPNDDTIEQfkQIYREESDIKQsEIELNARA 337
Cdd:TIGR00618 297 AHIKAVTQIEQQAQRiHTELQSKMRSRAKLLMKRAAHVKQ------QSSIEEQRRLLQ--TLHSQEIHIRD-AHEVATSI 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 338 KEISEKQHAQQEHKTSVGwQEIHHDTDTSEAAKSyasyliKARQEEQIQQQHLTRLIDENTIEQTALVKEIE-ALEQDLI 416
Cdd:TIGR00618 368 REISCQQHTLTQHIHTLQ-QQKTTLTQKLQSLCK------ELDILQREQATIDTRTSAFRDLQGQLAHAKKQqELQQRYA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 417 SEDALAKKKQYNQQKLELNEKENLYQKLKDTFENEKANKIKRQQWLRFSFVLLAIVGIALAVFSFMTQNMIFTVVFAVLT 496
Cdd:TIGR00618 441 ELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDI 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 497 LIfivgiflakaktvdySETIGIEIQDLEQQLNYLEndydldfdlEEQYQLRDQWQNALKNKTIIDEKMKHQQDKLSSSH 576
Cdd:TIGR00618 521 DN---------------PGPLTRRMQRGEQTYAQLE---------TSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILT 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 577 QQLDRHEHDINEVKQSLFLPTKMSDDLLLDSIKT----------INTIKSDDKLLQTLQQDYSHLNDKITSFYEQAKSTV 646
Cdd:TIGR00618 577 QCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLaceqhallrkLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLT 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 647 QPEIERFNRSSFFDDLKDWIStSESNRQRKAELNKQITLLNNELTQLHANLAENTATIDTLFNFIgvndEESYYAHHKAY 726
Cdd:TIGR00618 657 QERVREHALSIRVLPKELLAS-RQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREF----NEIENASSSLG 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 727 QTYQQNLARFNDLTKYLENQ-----NYSYEDSSALSKKTTA--QLDKEDQVLAKQVDDYNEQFLAKQQEVSDLTAQI--- 796
Cdd:TIGR00618 732 SDLAAREDALNQSLKELMHQartvlKARTEAHFNNNEEVTAalQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIgqe 811
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 1230885120 797 -KHMETDSTLSD--LRHEYHSLKNQMNEIAKDWASLSYLQALVNEHIKQIKDKRLPQ 850
Cdd:TIGR00618 812 iPSDEDILNLQCetLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQ 868
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
183-460 |
3.28e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.01 E-value: 3.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 183 ILNQQLAQLKGLEAQIRD--------EEAKLTDYHRYVDDKDKSSRHLAHLKDNLSQLSSMHAAKQKEVALHEQTQEwkE 254
Cdd:COG1196 194 ILGELERQLEPLERQAEKaeryrelkEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE--E 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 255 LEGKLNIEPLTFPEQGIDRYEAAKGyKQTLEQEIGLKEEALKQLTKENKQLSvpnddtiEQFKQIYREESDIKQSEIELN 334
Cdd:COG1196 272 LRLELEELELELEEAQAEEYELLAE-LARLEQDIARLEERRRELEERLEELE-------EELAELEEELEELEEELEELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 335 ARAKEISEKQHAQQEHKtsvgwqeihhdtDTSEAAKSYASYLIKARQEEQIQQQHLTRLIDENTIEQTALVKEIEALEQD 414
Cdd:COG1196 344 EELEEAEEELEEAEAEL------------AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1230885120 415 LISEDAlAKKKQYNQQKLELNEKENLYQKLKDTFENEKANKIKRQQ 460
Cdd:COG1196 412 LLERLE-RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
6-146 |
4.63e-05 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 45.18 E-value: 4.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 6 LEIYGYGQFVHRKIEFNRAFTEIYGENEAGKSTIQAFIHSILFGF-----PTKKEKEPRLEPRLGNQYGGK--LALILDD 78
Cdd:pfam13476 1 LTIENFRSFRDQTIDFSKGLTLITGPNGSGKTTILDAIKLALYGKtsrlkRKSGGGFVKGDIRIGLEGKGKayVEITFEN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1230885120 79 NS-----TIEVERVKGRAQGDvKVFLENGTIKDEAWLNAKLNHINKKTYQGIFSFDVLGLQDIHRNLNETQLQ 146
Cdd:pfam13476 81 NDgrytyAIERSRELSKKKGK-TKKKEILEILEIDELQQFISELLKSDKIILPLLVFLGQEREEEFERKEKKE 152
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
272-465 |
8.76e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 8.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 272 DRYEAAKGYKQTLEQEIGLKEEALKQLTKE----NKQLSVPNDDTIEQFKQIYREESDIKQSEIELNARAKEISEKQHAQ 347
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEekalLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 348 QEHKTSVG--------------WQEIHHDTDTSEAAKS--YASYLIKARQEE------------------QIQQQHLTRL 393
Cdd:COG4942 100 EAQKEELAellralyrlgrqppLALLLSPEDFLDAVRRlqYLKYLAPARREQaeelradlaelaalraelEAERAELEAL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1230885120 394 IDENTIEQTALVKEIEalEQDLISEDALAKKKQYNQQKLELNEKENLYQKLKDTFENEKANKIKRQQWLRFS 465
Cdd:COG4942 180 LAELEEERAALEALKA--ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFA 249
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
173-460 |
4.36e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 4.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 173 ELYKKSG---------KNPILNQqlAQLKGLEAQIRDEEAKL-TDYHRYVDDKDKSSRHLAHLKDNLSQLSSMHAAKQKE 242
Cdd:TIGR02169 647 ELFEKSGamtggsrapRGGILFS--RSEPAELQRLRERLEGLkRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE 724
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 243 VALHEQ-----TQEWKELEGKLNIEpltfpEQGIdryEAAKGYKQTLEQEIGLKEEALKQLTKENKQLSvpNDDTIEQFK 317
Cdd:TIGR02169 725 IEQLEQeeeklKERLEELEEDLSSL-----EQEI---ENVKSELKELEARIEELEEDLHKLEEALNDLE--ARLSHSRIP 794
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 318 QIYREESDIKQSEIELNARAKEISEKQHAQQEHKtsvgwqeihhdtdtseaaksyaSYLIKARQEEQIQQQHLTRLIDEN 397
Cdd:TIGR02169 795 EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK----------------------EYLEKEIQELQEQRIDLKEQIKSI 852
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1230885120 398 TieqtalvKEIEALEQDLISEDALAKKKQYNQQKLElNEKENLYQKLKDTFENEKANKIKRQQ 460
Cdd:TIGR02169 853 E-------KEIENLNGKKEELEEELEELEAALRDLE-SRLGDLKKERDELEAQLRELERKIEE 907
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
730-847 |
5.45e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 5.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 730 QQNLARFNDLTKYLENQNYSYEdssALSKKTTAQLDKEDQV--------------LAKQVDDYNEQFLAKQQEVSDLTAQ 795
Cdd:TIGR02168 185 RENLDRLEDILNELERQLKSLE---RQAEKAERYKELKAELrelelallvlrleeLREELEELQEELKEAEEELEELTAE 261
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1230885120 796 IKhmETDSTLSDLRHEYHSLKNQMNEIAKDWASLSYLQALVNEHIKQIKDKR 847
Cdd:TIGR02168 262 LQ--ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
|
| COG3950 |
COG3950 |
Predicted ATP-binding protein involved in virulence [General function prediction only]; |
1-50 |
7.58e-04 |
|
Predicted ATP-binding protein involved in virulence [General function prediction only];
Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 42.68 E-value: 7.58e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1230885120 1 MIIKSLEIYGYGQFVHRKIEFNRA--FTEIYGENEAGKSTIQAFIHSILFGF 50
Cdd:COG3950 1 MRIKSLTIENFRGFEDLEIDFDNPprLTVLVGENGSGKTTLLEAIALALSGL 52
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
211-413 |
9.61e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 9.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 211 YVDDKDKSSRHLAHLKDNLSQLSSMH-----AAKQKEV--ALHEQTQEWKELEGKLNI-----EPLTfPEQGIDRYEAAK 278
Cdd:COG4913 216 YMLEEPDTFEAADALVEHFDDLERAHealedAREQIELlePIRELAERYAAARERLAEleylrAALR-LWFAQRRLELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 279 GYKQTLEQEIGLKEEALKQLTKENKQLsvpnDDTIEQFKQIYREESDIK----QSEIE-LNARAKEISEKQHAQQEHKTS 353
Cdd:COG4913 295 AELEELRAELARLEAELERLEARLDAL----REELDELEAQIRGNGGDRleqlEREIErLERELEERERRRARLEALLAA 370
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1230885120 354 VGWQEIHHDTDTSEAAKSYASYLIKARQEEQIQQQHLTRLIDENT---IEQTALVKEIEALEQ 413
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRdlrRELRELEAEIASLER 433
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
317-593 |
3.31e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 317 KQIYREESDIKQSEIELNARAKEISEKQhaQQEHKTSVGWQEIhhDTDTSEAAKSYAsylikaRQEEQIQQqhLTRLIDE 396
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELE--EELEQLRKELEEL--SRQISALRKDLA------RLEAEVEQ--LEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 397 NTIEQTALVKEIEALEQDLISEDALAKKKQYNQQKLElnekENLYQKLKDTFENEKANKIKRQQwlrfsfvlLAIVGIAL 476
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE----AQIEQLKEELKALREALDELRAE--------LTLLNEEA 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 477 AVFSFMTQNMIFTVVFAVLTLIFIVGIFLAKAKTVDYS----ETIGIEIQDLEQQLNYLENDYD-----LDFDLEEQYQL 547
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLaaeiEELEELIEELESELEALLNERAsleeaLALLRSELEEL 899
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1230885120 548 RDQWQNALKNKTIIDEKMKHQQDKLSSSHQQLDRHEHDINEVKQSL 593
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
291-460 |
3.90e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 3.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 291 KEEALKQL--TKENkqLSVPNDDTIEQFKQI------------YRE-ESDIKQSEIELNARAKEISEKQHAQQEhktsvg 355
Cdd:COG1196 174 KEEAERKLeaTEEN--LERLEDILGELERQLeplerqaekaerYRElKEELKELEAELLLLKLRELEAELEELE------ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 356 wQEIHHDTDTSEAAKSYASYLIKARQEEQIQQQHLTRLIDENTIEQTALVKEIEALEQDLISE-----DALAKKKQYNQQ 430
Cdd:COG1196 246 -AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLeerrrELEERLEELEEE 324
|
170 180 190
....*....|....*....|....*....|
gi 1230885120 431 KLELNEKENLYQKLKDTFENEKANKIKRQQ 460
Cdd:COG1196 325 LAELEEELEELEEELEELEEELEEAEEELE 354
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
159-461 |
4.11e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.22 E-value: 4.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 159 EFGHMGEVISQKKEELYKKsgknpiLNQQLAQLKglEAQIRDEEAKLTDYHRYVDDKDKSSRHLAHLKDNLSQLSSMHAA 238
Cdd:COG5022 839 EFSLKAEVLIQKFGRSLKA------KKRFSLLKK--ETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIE 910
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 239 KQKEValheQTQEWKELEGKLniEPLTFPEQGIDRYEAakgyKQTLEQEIGLKEEALKQLTKEN--KQLSVPNDDTIEQf 316
Cdd:COG5022 911 LKKSL----SSDLIENLEFKT--ELIARLKKLLNNIDL----EEGPSIEYVKLPELNKLHEVESklKETSEEYEDLLKK- 979
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 317 KQIYREESDIKQSEIE-LNARAKEISEKQHAQQEHKTSvgwqeiHHDTDTSEAAKSYASYLIKARQEEQIQQQHLTRLID 395
Cdd:COG5022 980 STILVREGNKANSELKnFKKELAELSKQYGALQESTKQ------LKELPVEVAELQSASKIISSESTELSILKPLQKLKG 1053
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1230885120 396 ENTIEQTALVKEIEALEQDlISEDALAKKKQYNQQK-----LELNEKENLYQKLKDTFENEKANKIKRQQW 461
Cdd:COG5022 1054 LLLLENNQLQARYKALKLR-RENSLLDDKQLYQLEStenllKTINVKDLEVTNRNLVKPANVLQFIVAQMI 1123
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
282-433 |
4.61e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 40.45 E-value: 4.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 282 QTLEQEIGLKEEALKQltkENKQLSVPNDDTIEQFKQIYREESDIKQSEIELNARAKEIS---------EKQHAQQEHKT 352
Cdd:PRK11637 50 KSIQQDIAAKEKSVRQ---QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDelnasiaklEQQQAAQERLL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1230885120 353 S------------VGWQEI--HHDTDTSEAAKSYASYLIKARQE--EQIQQqhlTRlidentieqTALVKEIEALEQDLI 416
Cdd:PRK11637 127 AaqldaafrqgehTGLQLIlsGEESQRGERILAYFGYLNQARQEtiAELKQ---TR---------EELAAQKAELEEKQS 194
|
170
....*....|....*..
gi 1230885120 417 SEDALAKKKQYNQQKLE 433
Cdd:PRK11637 195 QQKTLLYEQQAQQQKLE 211
|
|
| |
