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Conserved domains on  [gi|1215380083|gb|ASK86025|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Conepatus leuconotus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl31799
NADH dehydrogenase subunit 5; Provisional
 1-209 2.51e-138

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00108:

Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 399.61  E-value: 2.51e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083   1 SMMVTLFMLTMPTMLTSTNMYKNKKYPQYVKTIVSYAFMTSMIPMTMFMYSGQETIISNWHWMTIQTMKLSLSFKLDFFS 80
Cdd:MTH00108    7 STLLTLLILTLPIIMTLTNPYKTNNYPLYVKTTISYAFIISLIPTMMFIHSGQEMIISNWHWMTIQTLKLSLSFKLDYFS 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  81 MIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMILVTANNMFQLFIGWEGVGVMSFLLIGWWYGRTDANT 160
Cdd:MTH00108   87 MIFIPVALFVTWSIMEFSMWYMHSDPNINRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANT 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1215380083 161 AALQAILYNRIGDVGFIMTMAWFLLNLNTWNLQQILMTNCNNLNMPLLG 209
Cdd:MTH00108  167 AALQAILYNRIGDIGFILAMAWFLLNLNSWDLQQIFMLNPNNSNLPLMG 215
 
Name Accession Description Interval E-value
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-209 2.51e-138

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 399.61  E-value: 2.51e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083   1 SMMVTLFMLTMPTMLTSTNMYKNKKYPQYVKTIVSYAFMTSMIPMTMFMYSGQETIISNWHWMTIQTMKLSLSFKLDFFS 80
Cdd:MTH00108    7 STLLTLLILTLPIIMTLTNPYKTNNYPLYVKTTISYAFIISLIPTMMFIHSGQEMIISNWHWMTIQTLKLSLSFKLDYFS 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  81 MIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMILVTANNMFQLFIGWEGVGVMSFLLIGWWYGRTDANT 160
Cdd:MTH00108   87 MIFIPVALFVTWSIMEFSMWYMHSDPNINRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANT 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1215380083 161 AALQAILYNRIGDVGFIMTMAWFLLNLNTWNLQQILMTNCNNLNMPLLG 209
Cdd:MTH00108  167 AALQAILYNRIGDIGFILAMAWFLLNLNSWDLQQIFMLNPNNSNLPLMG 215
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 45-196 3.00e-40

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 144.52  E-value: 3.00e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  45 MTMFMYSGQETIISNWHWMTIQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMI 124
Cdd:COG1009    47 LLFPAVLGGEVVVELYTWIPVGSLGLDFGFRLDGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAYLLLFMAAMLG 126

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1215380083 125 LVTANNMFQLFIGWEGVGVMSFLLIGWWYGRTDANTAALQAILYNRIGDVGFIMTMAWFLLNLNTWNLQQIL 196
Cdd:COG1009   127 LVLSDNLLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELL 198
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 60-196 3.53e-35

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 130.48  E-value: 3.53e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  60 WHWMTIQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMILVTANNMFQLFIGWE 139
Cdd:TIGR01974  65 FPWISVGGFQVDFGLRLDGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLMLVLADNFLQLFFGWE 144

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1215380083 140 GVGVMSFLLIGWWYGRTDANTAALQAILYNRIGDVGFIMTMAWFLLNLNTWNLQQIL 196
Cdd:TIGR01974 145 GVGLCSYLLIGFWYKKPSANNAAIKAFVVNRVGDFGLLLGIFLIFWYFGTLNFQEVF 201
Proton_antipo_N pfam00662
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an ...
 62-112 3.01e-13

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.


Pssm-ID: 459895 [Multi-domain]  Cd Length: 51  Bit Score: 61.68  E-value: 3.01e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1215380083  62 WMTIQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFF 112
Cdd:pfam00662   1 WLSVGDLSISFGFLIDPLSALMLLVVTGVSLLVHIYSIGYMHHDPGYARFF 51
 
Name Accession Description Interval E-value
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-209 2.51e-138

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 399.61  E-value: 2.51e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083   1 SMMVTLFMLTMPTMLTSTNMYKNKKYPQYVKTIVSYAFMTSMIPMTMFMYSGQETIISNWHWMTIQTMKLSLSFKLDFFS 80
Cdd:MTH00108    7 STLLTLLILTLPIIMTLTNPYKTNNYPLYVKTTISYAFIISLIPTMMFIHSGQEMIISNWHWMTIQTLKLSLSFKLDYFS 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  81 MIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMILVTANNMFQLFIGWEGVGVMSFLLIGWWYGRTDANT 160
Cdd:MTH00108   87 MIFIPVALFVTWSIMEFSMWYMHSDPNINRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANT 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1215380083 161 AALQAILYNRIGDVGFIMTMAWFLLNLNTWNLQQILMTNCNNLNMPLLG 209
Cdd:MTH00108  167 AALQAILYNRIGDIGFILAMAWFLLNLNSWDLQQIFMLNPNNSNLPLMG 215
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-209 7.55e-108

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 321.78  E-value: 7.55e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083   1 SMMVTLFMLTMPTMLTSTNMYKNKKYP-QYVKTIVSYAFMTSMIPMTMFMYSGQETIISNWHWMTIQTMKLSLSFKLDFF 79
Cdd:MTH00137   10 SLILIFALLIYPLLTTLSPNPQKPNWAlTHVKTAVKTAFFVSLLPLFLFLNQGAETIITNWNWMNTLTFDINISFKFDHY 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  80 SMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMILVTANNMFQLFIGWEGVGVMSFLLIGWWYGRTDAN 159
Cdd:MTH00137   90 SIIFTPIALYVTWSILEFASWYMHADPNMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADAN 169

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1215380083 160 TAALQAILYNRIGDVGFIMTMAWFLLNLNTWNLQQILMTNCN-NLNMPLLG 209
Cdd:MTH00137  170 TAALQAVIYNRVGDIGLILAMAWMATNLNSWEIQQIFALSKDfDLTLPLLG 220
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-209 9.63e-103

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 308.63  E-value: 9.63e-103
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083   1 SMMVTLFMLTMPTMLTSTNMyKNKKYPQYVKTIVSYAFMTSMIPMTMFMYSGQETIISNWHWMTIQTMKLSLSFKLDFFS 80
Cdd:MTH00004    8 TTLLTLLILLTPILLPLLSK-NLKNSPTTIKTTVKLAFLISLIPLTLFLNSGTESITTNWPWIFTTTFNIPISFKLDQYS 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  81 MIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMILVTANNMFQLFIGWEGVGVMSFLLIGWWYGRTDANT 160
Cdd:MTH00004   87 LMFLPIALFVTWSILEFSTWYMASDPHITKFFKYLLIFLIAMLILITANNMFQLFIGWEGVGIMSFLLIGWWSGRAEANT 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1215380083 161 AALQAILYNRIGDVGFIMTMAWFLLNLNTWNLQQILMTNCNNLnMPLLG 209
Cdd:MTH00004  167 AALQAIIYNRIGDIGLILSMAWLAMTLNTWEIQQLFSPTQTPT-LPLLG 214
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-209 4.12e-95

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 288.73  E-value: 4.12e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083   1 SMMVTLFMLTMPTMLTSTNMYknkkyPQYVKTIVSYAFMTSMIPMTMFMYSGQETIISNWHWMTIQTMKLSLSFKLDFFS 80
Cdd:MTH00066   10 SMILSLLLLILPLLLPKSNNF-----HTNVKTSVKTAFFISLIPLMIFINQGLESITTSFHWMNIFNFNINSSFKFDQYS 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  81 MIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMILVTANNMFQLFIGWEGVGVMSFLLIGWWYGRTDANT 160
Cdd:MTH00066   85 IIFLPIALFVTWSILEFAIWYMHSDPKINRFFKYLLIFLIAMMILVTANNLFQLFIGWEGVGIMSFLLIGWWHARADANT 164

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1215380083 161 AALQAILYNRIGDVGFIMTMAWFLLNLNTWNLQQILMTNCNNLnMPLLG 209
Cdd:MTH00066  165 AALQAVLYNRVGDIGLILSMAWLAMNTNSWELQQIFLLNDNST-LPLLG 212
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-209 1.59e-63

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 206.73  E-value: 1.59e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083   1 SMMVTLFMLTMpTMLTSTNMYKNKKYPQYVKTIVSYAFMTSMIPMTMFMYSGQETIISNWHWMTIQTMKLSLSFKLDFFS 80
Cdd:MTH00211    3 TIFNSGFLLIL-ILLLLPLLLPLNNSKLHIKKAVKLSFFISLIPLLIFLDQGLETILTNWSWINLGLFSLNLSFKFDFYS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  81 MIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMILVTANNMFQLFIGWEGVGVMSFLLIGWWYGRTDANT 160
Cdd:MTH00211   82 IFFTSVALYVTWSILEFSLWYMSSEPNINRFFKYLLLFLIFMLILVSANNLFQLFIGWEGVGIMSFLLISWWYGRSDANT 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 1215380083 161 AALQAILYNRIGDVGFIMTMAWFLLNLNTWNLQQILMTNcNNLNMPLLG 209
Cdd:MTH00211  162 AALQAVIYNRIGDIGLLLSMVWLLLNLNSWEISQLFILN-LDLTLFLLG 209
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 41-202 2.69e-55

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 185.56  E-value: 2.69e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  41 SMIPMTMFMYSG-QETIISNWHWMTIQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFL 119
Cdd:MTH00208   69 SLINLLIWILLGcPNINISLSNWLSNTLFNFSLSFIFDFYFILFFSVALFVTWSIIEFSHYYMSNDPNKNAFFRLLIIFL 148

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083 120 ITMMILVTANNMFQLFIGWEGVGVMSFLLIGWWYGRTDANTAALQAILYNRIGDVGFIMTMAWFLLNLNTWNLQQILMTN 199
Cdd:MTH00208  149 LNMLILTSSNNLFLLFIGWEGVGFLSFLLISWWTTRNDANSSALQAVIYNRIGDIGIILFLSLSLINFNSWNLNEILSLN 228


                  ...
gi 1215380083 200 CNN 202
Cdd:MTH00208  229 NSN 231
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 45-196 3.00e-40

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 144.52  E-value: 3.00e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  45 MTMFMYSGQETIISNWHWMTIQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMI 124
Cdd:COG1009    47 LLFPAVLGGEVVVELYTWIPVGSLGLDFGFRLDGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAYLLLFMAAMLG 126

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1215380083 125 LVTANNMFQLFIGWEGVGVMSFLLIGWWYGRTDANTAALQAILYNRIGDVGFIMTMAWFLLNLNTWNLQQIL 196
Cdd:COG1009   127 LVLSDNLLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELL 198
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 45-196 9.35e-37

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 134.90  E-value: 9.35e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  45 MTMFMYSGQETIISNWHWMTIQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMI 124
Cdd:PRK06590   51 FDFLLGGGRAFSQTLWTWISVGDFDVDFGLRVDGLSATMLVVVTGVSFLVHIYSIGYMAHDEGYRRFFAYLNLFTFSMLM 130

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1215380083 125 LVTANNMFQLFIGWEGVGVMSFLLIGWWYGRTDANTAALQAILYNRIGDVGFIMTMAWFLLNLNTWNLQQIL 196
Cdd:PRK06590  131 LVLSDNLLQLFFGWEGVGLCSYLLIGFWYKKPSAGAAAMKAFIVNRVGDVGLALGIFLLFAEFGSLNYDEVF 202
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 60-196 3.53e-35

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 130.48  E-value: 3.53e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  60 WHWMTIQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMILVTANNMFQLFIGWE 139
Cdd:TIGR01974  65 FPWISVGGFQVDFGLRLDGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLMLVLADNFLQLFFGWE 144

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1215380083 140 GVGVMSFLLIGWWYGRTDANTAALQAILYNRIGDVGFIMTMAWFLLNLNTWNLQQIL 196
Cdd:TIGR01974 145 GVGLCSYLLIGFWYKKPSANNAAIKAFVVNRVGDFGLLLGIFLIFWYFGTLNFQEVF 201
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 50-180 3.69e-27

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 107.86  E-value: 3.69e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  50 YSGQETIISNWHWMTIQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMILVTAN 129
Cdd:MTH00020   52 FNSSTTYIKLWRWLDSDLLTVYFGLQFDGLVAIMLLVVTTVSTLVHIFSTAYMRGDPHIPRFMSYLSLFTFLMVVLVTSD 131

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1215380083 130 NMFQLFIGWEGVGVMSFLLIGWWYGRTDANTAALQAILYNRIGDVGFIMTM 180
Cdd:MTH00020  132 NYLQLFIGWEGVGLCSYLLINFWLTRIEANKAAIKAMLVNRVGDIGLLLAM 182
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 51-180 2.00e-24

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 100.08  E-value: 2.00e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  51 SGQETIISNWHWMTIQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMILVTANN 130
Cdd:MTH00210   53 NGSATYIKLWRWFDSELLTTYFGLQFDSLTSTMLIVITSVSALVHIYSTGYMSGDPHIPRFMSYLSLFTFLMIVLVTSDN 132

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1215380083 131 MFQLFIGWEGVGVMSFLLIGWWYGRTDANTAALQAILYNRIGDVGFIMTM 180
Cdd:MTH00210  133 YVQLFIGWEGVGLCSYLLINFWLTRIKANKAAIKAMLINRVGDIGLVLAM 182
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 57-180 3.10e-23

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 96.57  E-value: 3.10e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  57 ISNWHWMTIQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMILVTANNMFQLFI 136
Cdd:MTH00032   59 IELYKWIESEIFITHIGLLYDTLSVTMLLVISSISTLVHIYSTSYMSDDPHVPRFLCYLSLFTFLMMVLVTSDNYLQLFI 138

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1215380083 137 GWEGVGVMSFLLIGWWYGRTDANTAALQAILYNRIGDVGFIMTM 180
Cdd:MTH00032  139 GWEGVGVCSYLLVAFWTTRIQANKAAIKAIVVNRVGDVGVILGM 182
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 33-185 1.12e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 89.13  E-value: 1.12e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  33 IVSYAFMTSMIPMTMFMYSGQETIISNWHWMTIQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFF 112
Cdd:MTH00151    9 FLLFSYSVFLFPLLGYFGLNGISLIFEWELLSVSSCSFSFELVLDWVSLSFSGVVCLISGCVFLFSSSYMSEDPFLKRFM 88

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1215380083 113 NYLLMFLITMMILVTANNMFQLFIGWEGVGVMSFLLIgWWYGRTDANTAALQAILYNRIGDVGFIMTMAWFLL 185
Cdd:MTH00151   89 WLVMLFVLSMNLLIFIPSLPSLLLGWDGLGIVSFALV-IYYQNKKSLSAGMLTALTNRIGDVLILLSIALLVL 160
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 38-209 5.36e-18

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 81.34  E-value: 5.36e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  38 FMTSMIPMTMFMY--SGQETIISNWHWMTIQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYL 115
Cdd:MTH00165   12 FFLSLILFFLGLYflLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDKNINRFIYLV 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083 116 LMFLITMMILVTANNMFQLFIGWEGVGVMSFLLIgWWYGRTDANTAALQAILYNRIGDVGFIMTMAWFlLNLNTWNLQQI 195
Cdd:MTH00165   92 LLFVLSMMLLIISPNLISILLGWDGLGLVSYCLV-IYYQNKKSYNAGMLTALSNRIGDVAILLSIAWM-MNFGSWNFIFY 169

                         170
                  ....*....|....
gi 1215380083 196 LMTNCNNLNMPLLG 209
Cdd:MTH00165  170 LDFMKNSFEMLLIG 183
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
33-180 1.75e-17

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 80.07  E-value: 1.75e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  33 IVSYAFMTSMIpmtmfmySGQETIISNWHWMTIQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFF 112
Cdd:PRK07376   53 VLSYALLWSQI-------QGHEPYERLFEWASAGDFHLPMGYVIDPLGAVMLVLVTTVALLVMIYSDGYMAHDPGYVRFF 125

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1215380083 113 NYLLMFLITMMILVTANNMFQLFIGWEGVGVMSFLLIGWWYGRTDANTAALQAILYNRIGDVGFIMTM 180
Cdd:PRK07376  126 AYLSLFSSSMLGLVISPNLVQIYVFWELVGMCSYLLVGFWYDRKGAADAAQKAFVVNRVGDFGLLLGI 193
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 36-178 2.46e-17

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 79.58  E-value: 2.46e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  36 YAFMTSMIPMTMFMY--------SGQETIISNWHWmtIQTMKLSLSFKLDFFSMIFvpvALFVT---WSIMEFSMWYMHS 104
Cdd:PRK12647   16 AGWLLALLPLALFLYflsfipeiAAGETVRGGYAW--VPSLGVNLSFLLDGLSLTF---ALLITgigTLIVLYAGGYLKG 90

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1215380083 105 DPYINRFFNYLLMFLITMMILVTANNMFQLFIGWEGVGVMSFLLIGWWYGRTDANTAALQAILYNRIGD----VGFIM 178
Cdd:PRK12647   91 HPDLGRFYSYILLFMASMLGLVLSDNLITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTGGGGlallAGLIL 168
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 38-192 3.34e-17

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 79.30  E-value: 3.34e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  38 FMTSMIPMTMFMYsGQETIISNWHWMTIQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLM 117
Cdd:MTH00209   13 FLFSFLMFVIFMW-FQKIVILEWELLSLNSMSISFPLIIDKMSLLFSSVVLLISGSVMWFSTSYMAGEKFKKRFILLVLL 91

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1215380083 118 FLITMMILVTANNMFQLFIGWEGVGVMSFLLIgWWYGRTDANTAALQAILYNRIGDVGFIMTMAWFlLNLNTWNL 192
Cdd:MTH00209   92 FILSMNFLIFVPNLITLLLGWDGLGLVSYLLV-IYYQNSKSLSAGMLTALTNRVGDALLILSIAWM-LMHGNWNI 164
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 27-203 8.11e-17

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 77.88  E-value: 8.11e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  27 PQYVKTIVSYAFMTSMIPMTMFMYSGQETIISNWHWMTIQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDP 106
Cdd:MTH00207    6 PSSIASYLLWFMSILMFPLSLYLMMCNKTILIEWEIFTISSSPINFTIILDPTGTLFSSTVLFISANVLLFAKTYMQEDK 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083 107 YINRFFNYLLMFLITMMILVTANNMFQLFIGWEGVGVMSFLLIgWWYGRTDANTAALQAILYNRIGDVGFIMTMAWfLLN 186
Cdd:MTH00207   86 FLSRFISLVLLFVLSMNMLIFFPHLMILLLGWDGLGLVSFILV-IYYQNPKSLGAGMITALTNRIGDVMLLLSIGW-TLN 163

                         170
                  ....*....|....*..
gi 1215380083 187 LNTWNLQQILMTNCNNL 203
Cdd:MTH00207  164 QGHWSITNMWQTDMNNY 180
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 60-178 3.33e-14

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 70.72  E-value: 3.33e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  60 WHWMTIQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSD-PYINRFFNYLLMFLITMMILVTANNMFQLFIGW 138
Cdd:PRK12644   56 EVVPWIPSLGLDLAFRLDALAALMSLLVLGVGALVLLYCARYFDDDePRLGRFAAELVAFAGAMFGLVTSDNLLLLYVFW 135

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1215380083 139 EGVGVMSFLLIGWWYGRTDANTAALQAILYNRIGD----VGFIM 178
Cdd:PRK12644  136 ELTTVLSFLLIGHYAERAASRRAALQALLVTTAGGlamlVGIII 179
Proton_antipo_N pfam00662
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an ...
 62-112 3.01e-13

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.


Pssm-ID: 459895 [Multi-domain]  Cd Length: 51  Bit Score: 61.68  E-value: 3.01e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1215380083  62 WMTIQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFF 112
Cdd:pfam00662   1 WLSVGDLSISFGFLIDPLSALMLLVVTGVSLLVHIYSIGYMHHDPGYARFF 51
ndhF CHL00025
NADH dehydrogenase subunit 5
 101-175 4.12e-12

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 64.53  E-value: 4.12e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1215380083 101 YMHSDPYINRFFNYLLMFLITMMILVTANNMFQLFIGWEGVGVMSFLLIGWWYGRTDANTAALQAILYNRIGDVG 175
Cdd:CHL00025  114 YMSHDQGYLRFFAYLSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFG 188
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 54-158 8.64e-12

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 63.67  E-value: 8.64e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  54 ETIISNWHWMtiQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMILVTANNMFQ 133
Cdd:PRK12648   54 EVIRAEIEWL--PALGLNLSLRLDGLAWLFALLILGIGLLVVLYARYYLSPADPVPRFFSFLLLFMGAMLGIVLSGNLIL 131

                          90       100
                  ....*....|....*....|....*
gi 1215380083 134 LFIGWEGVGVMSFLLIGWWYGRTDA 158
Cdd:PRK12648  132 LVVFWELTSLSSFLLIGYWHHRADA 156
PRK12646 PRK12646
DUF4040 family protein;
62-178 5.45e-11

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 61.31  E-value: 5.45e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  62 WMTIqtMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYM-HSDPYINRFFNYLLMFLITMMILVTANNMFQLFIGWEG 140
Cdd:PRK12646   64 WMKT--LDINLDLRLDGLSLMFSLIISLIGIAVFFYATQYLsSRKDNLPRFYFYLTLFMFSMIGIVLSDNTILMYVFWEL 141

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1215380083 141 VGVMSFLLIGWWYGRTDANTAALQAILYNRIGD----VGFIM 178
Cdd:PRK12646  142 TSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGlallVGFIM 183
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 70-185 2.74e-10

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 59.07  E-value: 2.74e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  70 LSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMILVTANNMFQLFIGWEGVGVMSFLLI 149
Cdd:PRK12649   72 VEFSIYADGLAVLIGLIASGIGVIIMSYSNGYMSHKEDLPRYYQYLLLFMGSMIGMVFSGNTIQLFIFWELTSITSFMLI 151

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1215380083 150 GWWYGRTDANTAALQAILYNRIGdvGFIMTMAWFLL 185
Cdd:PRK12649  152 GYWRHRPESVYGATKSLLITAGG--GLFMFAGFLLL 185
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 70-195 3.67e-10

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 58.62  E-value: 3.67e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  70 LSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMILVTANNMFQLFIGWEGVGVMSFLLI 149
Cdd:COG0651    68 FGIVLVADRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLV 147

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1215380083 150 GwWYGRTDANTAALQAILYNRIGDVGFIMTMAWFLLNLNTWNLQQI 195
Cdd:COG0651   148 A-LGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADL 192
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 70-185 2.67e-09

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 56.08  E-value: 2.67e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  70 LSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMILVTANNMFQLFIGWEGVGVMSFLLI 149
Cdd:MTH00095   37 LSLKFNFYFNSLLFSLILLLVTLSVLVFSSYYMNGELNFNYFYFVLLIFVGSMFMLNFSNSVFTMLLSWDLLGISSFFLV 116

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1215380083 150 gWWYGRTDANTAALQAILYNRIGDVGFIMTMAWFLL 185
Cdd:MTH00095  117 -LFYNNWDSNSGAMNTALTNRIGDFFIFLFFSGFIF 151
PRK12650 PRK12650
DUF4040 family protein;
70-150 4.27e-09

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 55.43  E-value: 4.27e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  70 LSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFfnYLLM--FLITMMILVTANNMFQLFIGWEGVGVMSFL 147
Cdd:PRK12650   71 VNLALRADALSLFFALLALVIGAVVFIYSARYLPRKKGNTSF--YLLMtaFMAAMLLLVLADDVVVLFVAWELVSLASFF 148


                  ...
gi 1215380083 148 LIG 150
Cdd:PRK12650  149 LIA 151
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 33-155 5.12e-08

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 52.23  E-value: 5.12e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  33 IVSYAFMTSMIPMTMfmySGqETIISNWHWMTiqTMKLSLSFKLDFFSMIFvpvALFVTWS---IMEFSMWYMHSD-PYI 108
Cdd:PRK12645   39 VVLFIYFLSLIPTTM---SG-NTVMKTLPWIP--SLGINFTLYVDGLSLLF---ALLITGIgslVVLYSIYYLSKKkEQL 109

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1215380083 109 NRFFNYLLMFLITMMILVTANNMFQLFIGWEGVGVMSFLLIGWWYGR 155
Cdd:PRK12645  110 GNFYVYLLLFMGAMLGVVLSDNLIVLYLFWELTSISSFLLISYWYER 156
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 128-208 1.93e-07

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 50.00  E-value: 1.93e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083 128 ANNMFQLFIGWEGVGVMSFLLIGWWYGRTDANTAALQAILYNRIGDVGFIMTMAWFLLNLNTWNLQQILMTNCNNLNMPL 207
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLNSSG 80


                  .
gi 1215380083 208 L 208
Cdd:pfam00361  81 L 81
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 109-192 8.52e-07

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 48.43  E-value: 8.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083 109 NRFFNYLLMFLITMMILVTANNMFQLFIGWEGVGVMSFLLIGwWYGRTDANTAALQAILYNRIGDVGFIMTMAWFLLNLN 188
Cdd:PRK06525  113 GRYYAFLLLFIGAMAGLVYSSTLLGLLLFFEITGLCSWALIS-YYQSPKALRSALKALLITHIGSLGLYLAAATLFLQTG 191


                  ....
gi 1215380083 189 TWNL 192
Cdd:PRK06525  192 TFAL 195
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 52-178 2.51e-06

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 47.21  E-value: 2.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  52 GQETIISNWHWMTIQTMKLSLSFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPYINRFFNYLLMFLITMMILVTANNM 131
Cdd:PRK07390   63 NQPPQQLSFPWLQVADLDLSLSLEISPVTLGALELITGLSLLAQIYALGYLEKDWGLARFFALLGFFEAAMSGLALSDSL 142

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1215380083 132 FQLFIGWEGVGVMSFLLIGWWYGRTDANTAALQAILYNRIGDVGFIM 178
Cdd:PRK07390  143 FFSYVLLEILTLSTYLLVGFWYAQPLVVTAARDAFLTKRVGDLLLLM 189
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 73-163 8.13e-05

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 42.80  E-value: 8.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  73 SFKLDFFSMIFVPVALFVTWSIMEFSMWYMHSDPyINRFFNYLLMFLIT--MMILVTANNMFQLFIGWEGVGVMSFLLIG 150
Cdd:COG1007    65 MFVVDGFALFFKLLILLAALLVLLLSRDYLERRG-LLRGEFYALLLFATlgMMLMASANDLLTLFLGLELLSLSLYVLVA 143

                          90
                  ....*....|...
gi 1215380083 151 WWYGRTDANTAAL 163
Cdd:COG1007   144 FRRDDRRSSEAAL 156
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
92-196 3.49e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 40.84  E-value: 3.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380083  92 WSIMEFSMWYMHSDPYINRFFNYLLMFLITMMILVTANNMFQLFIGWEGVGVMSFLLIGWWYGRTDANTAALQAILYNRI 171
Cdd:PRK08168   83 WVIGRFSHRYLQGEPGQRRYVRALAGVLAAVHLLVLSDHLLVLIAAWAAISLALHRLLCFYPDRPFARLAAHKKFIADRL 162

                          90       100
                  ....*....|....*....|....*
gi 1215380083 172 GDVGFIMTMAWFLLNLNTWNLQQIL 196
Cdd:PRK08168  163 AELLLLAAAALAYLEVGSLSLSALW 187
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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