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Conserved domains on  [gi|1215380067|gb|ASK86017|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Spilogale gracilis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl31799
NADH dehydrogenase subunit 5; Provisional
 1-206 1.79e-139

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00108:

Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 402.31  E-value: 1.79e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067   1 SIMKILSMLTLPVLLTCTNLYKNKQYPQYVKTTISYTFMISMIPMMVFLYSGQEAIVSNWHWMTIQTMKLSLSLKLDHFS 80
Cdd:MTH00108    7 STLLTLLILTLPIIMTLTNPYKTNNYPLYVKTTISYAFIISLIPTMMFIHSGQEMIISNWHWMTIQTLKLSLSFKLDYFS 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  81 MMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMILVTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANT 160
Cdd:MTH00108   87 MIFIPVALFVTWSIMEFSMWYMHSDPNINRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANT 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1215380067 161 AALQAILYNRIGDVGFIMAMAWFLLNLNTWDFQQMFMANHNNLDLP 206
Cdd:MTH00108  167 AALQAILYNRIGDIGFILAMAWFLLNLNSWDLQQIFMLNPNNSNLP 212
 
Name Accession Description Interval E-value
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-206 1.79e-139

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 402.31  E-value: 1.79e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067   1 SIMKILSMLTLPVLLTCTNLYKNKQYPQYVKTTISYTFMISMIPMMVFLYSGQEAIVSNWHWMTIQTMKLSLSLKLDHFS 80
Cdd:MTH00108    7 STLLTLLILTLPIIMTLTNPYKTNNYPLYVKTTISYAFIISLIPTMMFIHSGQEMIISNWHWMTIQTLKLSLSFKLDYFS 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  81 MMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMILVTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANT 160
Cdd:MTH00108   87 MIFIPVALFVTWSIMEFSMWYMHSDPNINRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANT 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1215380067 161 AALQAILYNRIGDVGFIMAMAWFLLNLNTWDFQQMFMANHNNLDLP 206
Cdd:MTH00108  167 AALQAILYNRIGDIGFILAMAWFLLNLNSWDLQQIFMLNPNNSNLP 212
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 45-196 6.92e-43

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 151.46  E-value: 6.92e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  45 MMVFLYSGQEAIVSNWHWMTIQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMI 124
Cdd:COG1009    47 LLFPAVLGGEVVVELYTWIPVGSLGLDFGFRLDGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAYLLLFMAAMLG 126

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1215380067 125 LVTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDVGFIMAMAWFLLNLNTWDFQQMF 196
Cdd:COG1009   127 LVLSDNLLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELL 198
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 47-196 1.45e-36

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 134.33  E-value: 1.45e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  47 VFLYSGQEAI-VSNWHWMTIQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMIL 125
Cdd:TIGR01974  51 FFLNGEGEAFtQSLFPWISVGGFQVDFGLRLDGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLML 130

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1215380067 126 VTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDVGFIMAMAWFLLNLNTWDFQQMF 196
Cdd:TIGR01974 131 VLADNFLQLFFGWEGVGLCSYLLIGFWYKKPSANNAAIKAFVVNRVGDFGLLLGIFLIFWYFGTLNFQEVF 201
Proton_antipo_N pfam00662
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an ...
 62-112 6.06e-14

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.


Pssm-ID: 459895 [Multi-domain]  Cd Length: 51  Bit Score: 63.60  E-value: 6.06e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1215380067  62 WMTIQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFF 112
Cdd:pfam00662   1 WLSVGDLSISFGFLIDPLSALMLLVVTGVSLLVHIYSIGYMHHDPGYARFF 51
 
Name Accession Description Interval E-value
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 1-206 1.79e-139

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 402.31  E-value: 1.79e-139
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067   1 SIMKILSMLTLPVLLTCTNLYKNKQYPQYVKTTISYTFMISMIPMMVFLYSGQEAIVSNWHWMTIQTMKLSLSLKLDHFS 80
Cdd:MTH00108    7 STLLTLLILTLPIIMTLTNPYKTNNYPLYVKTTISYAFIISLIPTMMFIHSGQEMIISNWHWMTIQTLKLSLSFKLDYFS 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  81 MMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMILVTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANT 160
Cdd:MTH00108   87 MIFIPVALFVTWSIMEFSMWYMHSDPNINRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANT 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1215380067 161 AALQAILYNRIGDVGFIMAMAWFLLNLNTWDFQQMFMANHNNLDLP 206
Cdd:MTH00108  167 AALQAILYNRIGDIGFILAMAWFLLNLNSWDLQQIFMLNPNNSNLP 212
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 1-206 1.44e-111

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 331.41  E-value: 1.44e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067   1 SIMKILSMLTLPVLLTCTNLYKNKQYP-QYVKTTISYTFMISMIPMMVFLYSGQEAIVSNWHWMTIQTMKLSLSLKLDHF 79
Cdd:MTH00137   10 SLILIFALLIYPLLTTLSPNPQKPNWAlTHVKTAVKTAFFVSLLPLFLFLNQGAETIITNWNWMNTLTFDINISFKFDHY 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  80 SMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMILVTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDAN 159
Cdd:MTH00137   90 SIIFTPIALYVTWSILEFASWYMHADPNMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADAN 169

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1215380067 160 TAALQAILYNRIGDVGFIMAMAWFLLNLNTWDFQQMFMANHN-NLDLP 206
Cdd:MTH00137  170 TAALQAVIYNRVGDIGLILAMAWMATNLNSWEIQQIFALSKDfDLTLP 217
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 1-203 2.86e-104

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 312.10  E-value: 2.86e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067   1 SIMKILSMLTLPVLLTcTNLYKNKQYPQYVKTTISYTFMISMIPMMVFLYSGQEAIVSNWHWMTIQTMKLSLSLKLDHFS 80
Cdd:MTH00004    8 TTLLTLLILLTPILLP-LLSKNLKNSPTTIKTTVKLAFLISLIPLTLFLNSGTESITTNWPWIFTTTFNIPISFKLDQYS 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  81 MMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMILVTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANT 160
Cdd:MTH00004   87 LMFLPIALFVTWSILEFSTWYMASDPHITKFFKYLLIFLIAMLILITANNMFQLFIGWEGVGIMSFLLIGWWSGRAEANT 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1215380067 161 AALQAILYNRIGDVGFIMAMAWFLLNLNTWDFQQMFMANHNNL 203
Cdd:MTH00004  167 AALQAIIYNRIGDIGLILSMAWLAMTLNTWEIQQLFSPTQTPT 209
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 1-203 4.59e-97

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 293.74  E-value: 4.59e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067   1 SIMKILSMLTLPVLLTctnlyKNKQYPQYVKTTISYTFMISMIPMMVFLYSGQEAIVSNWHWMTIQTMKLSLSLKLDHFS 80
Cdd:MTH00066   10 SMILSLLLLILPLLLP-----KSNNFHTNVKTSVKTAFFISLIPLMIFINQGLESITTSFHWMNIFNFNINSSFKFDQYS 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  81 MMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMILVTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANT 160
Cdd:MTH00066   85 IIFLPIALFVTWSILEFAIWYMHSDPKINRFFKYLLIFLIAMMILVTANNLFQLFIGWEGVGIMSFLLIGWWHARADANT 164

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1215380067 161 AALQAILYNRIGDVGFIMAMAWFLLNLNTWDFQQMFMANHNNL 203
Cdd:MTH00066  165 AALQAVLYNRVGDIGLILSMAWLAMNTNSWELQQIFLLNDNST 207
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 1-202 1.76e-66

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 214.43  E-value: 1.76e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067   1 SIMKILSMLTLPVLLTCTNLYKnkqypqYVKTTISYTFMISMIPMMVFLYSGQEAIVSNWHWMTIQTMKLSLSLKLDHFS 80
Cdd:MTH00211    8 GFLLILILLLLPLLLPLNNSKL------HIKKAVKLSFFISLIPLLIFLDQGLETILTNWSWINLGLFSLNLSFKFDFYS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  81 MMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMILVTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANT 160
Cdd:MTH00211   82 IFFTSVALYVTWSILEFSLWYMSSEPNINRFFKYLLLFLIFMLILVSANNLFQLFIGWEGVGIMSFLLISWWYGRSDANT 161

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1215380067 161 AALQAILYNRIGDVGFIMAMAWFLLNLNTWDFQQMFMANHNN 202
Cdd:MTH00211  162 AALQAVIYNRIGDIGLLLSMVWLLLNLNSWEISQLFILNLDL 203
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 40-202 1.55e-53

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 180.55  E-value: 1.55e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  40 ISMIPMMVFLYSGQEAIVSNW-HWMTIQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMF 118
Cdd:MTH00208   68 LSLINLLIWILLGCPNINISLsNWLSNTLFNFSLSFIFDFYFILFFSVALFVTWSIIEFSHYYMSNDPNKNAFFRLLIIF 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067 119 LITMMILVTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDVGFIMAMAWFLLNLNTWDFQQMFMA 198
Cdd:MTH00208  148 LLNMLILTSSNNLFLLFIGWEGVGFLSFLLISWWTTRNDANSSALQAVIYNRIGDIGIILFLSLSLINFNSWNLNEILSL 227


                  ....
gi 1215380067 199 NHNN 202
Cdd:MTH00208  228 NNSN 231
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 45-196 6.92e-43

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 151.46  E-value: 6.92e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  45 MMVFLYSGQEAIVSNWHWMTIQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMI 124
Cdd:COG1009    47 LLFPAVLGGEVVVELYTWIPVGSLGLDFGFRLDGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAYLLLFMAAMLG 126

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1215380067 125 LVTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDVGFIMAMAWFLLNLNTWDFQQMF 196
Cdd:COG1009   127 LVLSDNLLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELL 198
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 48-205 1.12e-38

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 140.29  E-value: 1.12e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  48 FLYSGQEAI-VSNWHWMTIQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMILV 126
Cdd:PRK06590   53 FLLGGGRAFsQTLWTWISVGDFDVDFGLRVDGLSATMLVVVTGVSFLVHIYSIGYMAHDEGYRRFFAYLNLFTFSMLMLV 132

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1215380067 127 TANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDVGFIMAMAWFLLNLNTWDFQQMFMANHNNLDL 205
Cdd:PRK06590  133 LSDNLLQLFFGWEGVGLCSYLLIGFWYKKPSAGAAAMKAFIVNRVGDVGLALGIFLLFAEFGSLNYDEVFAAAPQFFGL 211
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 47-196 1.45e-36

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 134.33  E-value: 1.45e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  47 VFLYSGQEAI-VSNWHWMTIQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMIL 125
Cdd:TIGR01974  51 FFLNGEGEAFtQSLFPWISVGGFQVDFGLRLDGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLML 130

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1215380067 126 VTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDVGFIMAMAWFLLNLNTWDFQQMF 196
Cdd:TIGR01974 131 VLADNFLQLFFGWEGVGLCSYLLIGFWYKKPSANNAAIKAFVVNRVGDFGLLLGIFLIFWYFGTLNFQEVF 201
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 60-206 3.60e-28

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 110.55  E-value: 3.60e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  60 WHWMTIQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMILVTANNMFQLFIGWE 139
Cdd:MTH00020   62 WRWLDSDLLTVYFGLQFDGLVAIMLLVVTTVSTLVHIFSTAYMRGDPHIPRFMSYLSLFTFLMVVLVTSDNYLQLFIGWE 141

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1215380067 140 GVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDVGFIMAMAWFLLNLNTWDFQQMF----MANHNNLDLP 206
Cdd:MTH00020  142 GVGLCSYLLINFWLTRIEANKAAIKAMLVNRVGDIGLLLAMFLLWDRFGSLDFSSVFnmvvSAPSSDITLI 212
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 34-192 1.09e-25

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 103.55  E-value: 1.09e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  34 ISYTFMISMIPMMVFLYSGQEAIVSNWHWMTIQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFK 113
Cdd:MTH00210   36 IVISAIVSCCIFYETTLNGSATYIKLWRWFDSELLTTYFGLQFDSLTSTMLIVITSVSALVHIYSTGYMSGDPHIPRFMS 115

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1215380067 114 YLLMFLITMMILVTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDVGFIMAMAWFLLNLNTWDF 192
Cdd:MTH00210  116 YLSLFTFLMIVLVTSDNYVQLFIGWEGVGLCSYLLINFWLTRIKANKAAIKAMLINRVGDIGLVLAMIMILKEFGTLEF 194
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 60-192 3.94e-25

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 101.96  E-value: 3.94e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  60 WHWMTIQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMILVTANNMFQLFIGWE 139
Cdd:MTH00032   62 YKWIESEIFITHIGLLYDTLSVTMLLVISSISTLVHIYSTSYMSDDPHVPRFLCYLSLFTFLMMVLVTSDNYLQLFIGWE 141

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1215380067 140 GVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDVGFIMAMAWFLLNLNTWDF 192
Cdd:MTH00032  142 GVGVCSYLLVAFWTTRIQANKAAIKAIVVNRVGDVGVILGMVLIYKTIGSLDF 194
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 36-185 1.07e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 89.13  E-value: 1.07e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  36 YTFMISMIPMMVFLYSGQEAIVSNWHWMTIQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYL 115
Cdd:MTH00151   12 FSYSVFLFPLLGYFGLNGISLIFEWELLSVSSCSFSFELVLDWVSLSFSGVVCLISGCVFLFSSSYMSEDPFLKRFMWLV 91

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067 116 LMFLITMMILVTANNMFQLFIGWEGVGIMSFLLIGWWHGrTDANTAALQAILYNRIGDVGFIMAMAWFLL 185
Cdd:MTH00151   92 MLFVLSMNLLIFIPSLPSLLLGWDGLGIVSFALVIYYQN-KKSLSAGMLTALTNRIGDVLILLSIALLVL 160
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
34-195 8.41e-20

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 86.62  E-value: 8.41e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  34 ISYTFMISMIpmmvflySGQEAIVSNWHWMTIQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFK 113
Cdd:PRK07376   54 LSYALLWSQI-------QGHEPYERLFEWASAGDFHLPMGYVIDPLGAVMLVLVTTVALLVMIYSDGYMAHDPGYVRFFA 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067 114 YLLMFLITMMILVTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDVGFIMAMAWFLLNLNTWDFQ 193
Cdd:PRK07376  127 YLSLFSSSMLGLVISPNLVQIYVFWELVGMCSYLLVGFWYDRKGAADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFD 206


                  ..
gi 1215380067 194 QM 195
Cdd:PRK07376  207 GI 208
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 36-192 3.55e-19

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 84.70  E-value: 3.55e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  36 YTFMISMIPMMVFLYSGQEAIVSNWHWMTIQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYL 115
Cdd:MTH00209   10 MLLFLFSFLMFVIFMWFQKIVILEWELLSLNSMSISFPLIIDKMSLLFSSVVLLISGSVMWFSTSYMAGEKFKKRFILLV 89

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1215380067 116 LMFLITMMILVTANNMFQLFIGWEGVGIMSFLLIGWWHgRTDANTAALQAILYNRIGDVGFIMAMAWFlLNLNTWDF 192
Cdd:MTH00209   90 LLFILSMNFLIFVPNLITLLLGWDGLGLVSYLLVIYYQ-NSKSLSAGMLTALTNRVGDALLILSIAWM-LMHGNWNI 164
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 38-192 4.00e-19

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 84.42  E-value: 4.00e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  38 FMISMIPMMVFLYSGQeAIVSNWHWMTIQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLM 117
Cdd:MTH00165   15 SLILFFLGLYFLLNDY-SLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDKNINRFIYLVLL 93

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1215380067 118 FLITMMILVTANNMFQLFIGWEGVGIMSFLLIGWWHgRTDANTAALQAILYNRIGDVGFIMAMAWFlLNLNTWDF 192
Cdd:MTH00165   94 FVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQ-NKKSYNAGMLTALSNRIGDVAILLSIAWM-MNFGSWNF 166
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 39-178 6.96e-18

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 81.12  E-value: 6.96e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  39 MISMIPMMVFLY--------SGQEAIVSNWHWmtIQTMKLSLSLKLDHFSMMFmpvALFVT---WSIMEFSMWYMHSDPY 107
Cdd:PRK12647   19 LLALLPLALFLYflsfipeiAAGETVRGGYAW--VPSLGVNLSFLLDGLSLTF---ALLITgigTLIVLYAGGYLKGHPD 93

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1215380067 108 INRFFKYLLMFLITMMILVTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGD----VGFIM 178
Cdd:PRK12647   94 LGRFYSYILLFMASMLGLVLSDNLITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTGGGGlallAGLIL 168
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 36-203 3.06e-17

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 79.04  E-value: 3.06e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  36 YTFMISMIPMMVFLYSGQEAIVSNWHWMTIQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYL 115
Cdd:MTH00207   15 WFMSILMFPLSLYLMMCNKTILIEWEIFTISSSPINFTIILDPTGTLFSSTVLFISANVLLFAKTYMQEDKFLSRFISLV 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067 116 LMFLITMMILVTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAiLYNRIGDVGFIMAMAWfLLNLNTWDFQQM 195
Cdd:MTH00207   95 LLFVLSMNMLIFFPHLMILLLGWDGLGLVSFILVIYYQNPKSLGAGMITA-LTNRIGDVMLLLSIGW-TLNQGHWSITNM 172


                  ....*...
gi 1215380067 196 FMANHNNL 203
Cdd:MTH00207  173 WQTDMNNY 180
Proton_antipo_N pfam00662
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an ...
 62-112 6.06e-14

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.


Pssm-ID: 459895 [Multi-domain]  Cd Length: 51  Bit Score: 63.60  E-value: 6.06e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1215380067  62 WMTIQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFF 112
Cdd:pfam00662   1 WLSVGDLSISFGFLIDPLSALMLLVVTGVSLLVHIYSIGYMHHDPGYARFF 51
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 60-178 5.05e-13

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 66.87  E-value: 5.05e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  60 WHWMTIQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSD-PYINRFFKYLLMFLITMMILVTANNMFQLFIGW 138
Cdd:PRK12644   56 EVVPWIPSLGLDLAFRLDALAALMSLLVLGVGALVLLYCARYFDDDePRLGRFAAELVAFAGAMFGLVTSDNLLLLYVFW 135

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1215380067 139 EGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGD----VGFIM 178
Cdd:PRK12644  136 ELTTVLSFLLIGHYAERAASRRAALQALLVTTAGGlamlVGIII 179
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 54-158 1.41e-12

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 65.60  E-value: 1.41e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  54 EAIVSNWHWMtiQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMILVTANNMFQ 133
Cdd:PRK12648   54 EVIRAEIEWL--PALGLNLSLRLDGLAWLFALLILGIGLLVVLYARYYLSPADPVPRFFSFLLLFMGAMLGIVLSGNLIL 131

                          90       100
                  ....*....|....*....|....*
gi 1215380067 134 LFIGWEGVGIMSFLLIGWWHGRTDA 158
Cdd:PRK12648  132 LVVFWELTSLSSFLLIGYWHHRADA 156
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 70-195 5.57e-12

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 63.63  E-value: 5.57e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  70 LSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMILVTANNMFQLFIGWEGVGIMSFLLI 149
Cdd:COG0651    68 FGIVLVADRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLV 147

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1215380067 150 GwwHGRTDANT-AALQAILYNRIGDVGFIMAMAWFLLNLNTWDFQQM 195
Cdd:COG0651   148 A--LGGTKEALrAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADL 192
ndhF CHL00025
NADH dehydrogenase subunit 5
 101-175 5.78e-12

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 63.76  E-value: 5.78e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1215380067 101 YMHSDPYINRFFKYLLMFLITMMILVTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDVG 175
Cdd:CHL00025  114 YMSHDQGYLRFFAYLSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFG 188
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 70-203 1.23e-11

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 62.92  E-value: 1.23e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  70 LSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMILVTANNMFQLFIGWEGVGIMSFLLI 149
Cdd:PRK12649   72 VEFSIYADGLAVLIGLIASGIGVIIMSYSNGYMSHKEDLPRYYQYLLLFMGSMIGMVFSGNTIQLFIFWELTSITSFMLI 151

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1215380067 150 GWWHGRTDANTAALQAILYNRIGdvGFIMAMAWFLLNLNTWDFQQMFMANHNNL 203
Cdd:PRK12649  152 GYWRHRPESVYGATKSLLITAGG--GLFMFAGFLLLHVITGTYDIATILQDSEL 203
PRK12646 PRK12646
DUF4040 family protein;
62-178 6.41e-11

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 60.92  E-value: 6.41e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  62 WMTIqtMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYM-HSDPYINRFFKYLLMFLITMMILVTANNMFQLFIGWEG 140
Cdd:PRK12646   64 WMKT--LDINLDLRLDGLSLMFSLIISLIGIAVFFYATQYLsSRKDNLPRFYFYLTLFMFSMIGIVLSDNTILMYVFWEL 141

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1215380067 141 VGIMSFLLIGWWHGRTDANTAALQAILYNRIGD----VGFIM 178
Cdd:PRK12646  142 TSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGlallVGFIM 183
PRK12650 PRK12650
DUF4040 family protein;
70-150 2.51e-09

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 56.20  E-value: 2.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  70 LSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFfkYLLM--FLITMMILVTANNMFQLFIGWEGVGIMSFL 147
Cdd:PRK12650   71 VNLALRADALSLFFALLALVIGAVVFIYSARYLPRKKGNTSF--YLLMtaFMAAMLLLVLADDVVVLFVAWELVSLASFF 148


                  ...
gi 1215380067 148 LIG 150
Cdd:PRK12650  149 LIA 151
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 70-185 3.74e-09

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 55.69  E-value: 3.74e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  70 LSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMILVTANNMFQLFIGWEGVGIMSFLLI 149
Cdd:MTH00095   37 LSLKFNFYFNSLLFSLILLLVTLSVLVFSSYYMNGELNFNYFYFVLLIFVGSMFMLNFSNSVFTMLLSWDLLGISSFFLV 116

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1215380067 150 GWWhGRTDANTAALQAILYNRIGDVGFIMAMAWFLL 185
Cdd:MTH00095  117 LFY-NNWDSNSGAMNTALTNRIGDFFIFLFFSGFIF 151
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 128-204 1.44e-08

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 53.47  E-value: 1.44e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1215380067 128 ANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDVGFIMAMAWFLLNLNTWDFQQMFMANHNNLD 204
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGLN 77
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 109-192 3.77e-07

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 49.59  E-value: 3.77e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067 109 NRFFKYLLMFLITMMILVTANNMFQLFIGWEGVGIMSFLLIGwWHGRTDANTAALQAILYNRIGDVGFIMAMAWFLLNLN 188
Cdd:PRK06525  113 GRYYAFLLLFIGAMAGLVYSSTLLGLLLFFEITGLCSWALIS-YYQSPKALRSALKALLITHIGSLGLYLAAATLFLQTG 191


                  ....
gi 1215380067 189 TWDF 192
Cdd:PRK06525  192 TFAL 195
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 109-155 6.25e-07

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 49.15  E-value: 6.25e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1215380067 109 NRFFKYLLMFLITMMILVTANNMFQLFIGWEGVGIMSFLLIGWWHGR 155
Cdd:PRK12645  110 GNFYVYLLLFMGAMLGVVLSDNLIVLYLFWELTSISSFLLISYWYER 156
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 52-195 7.41e-07

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 48.75  E-value: 7.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  52 GQEAIVSNWHWMTIQTMKLSLSLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLMFLITMMILVTANNM 131
Cdd:PRK07390   63 NQPPQQLSFPWLQVADLDLSLSLEISPVTLGALELITGLSLLAQIYALGYLEKDWGLARFFALLGFFEAAMSGLALSDSL 142

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1215380067 132 FQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDVGFIMAMAWFLLNLNTWDFQQM 195
Cdd:PRK07390  143 FFSYVLLEILTLSTYLLVGFWYAQPLVVTAARDAFLTKRVGDLLLLMGVVALSPLAGTLNFSDL 206
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
38-181 3.88e-05

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 43.53  E-value: 3.88e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  38 FMISMIPMmVFLYSGQEAIVSNWhwmtiqtmklslsLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPYINRFFKYLLM 117
Cdd:PRK08168   43 LFLALLGL-VLFATGAAWPAAAW-------------LEVSGLGLVMAALVQLLGWVIGRFSHRYLQGEPGQRRYVRALAG 108

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1215380067 118 FLITMMILVTANNMFQLFIGWEGVGIMSFLLIGWWHGRTDANTAALQAILYNRIGDVGFIMAMA 181
Cdd:PRK08168  109 VLAAVHLLVLSDHLLVLIAAWAAISLALHRLLCFYPDRPFARLAAHKKFIADRLAELLLLAAAA 172
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 73-163 6.48e-05

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 42.80  E-value: 6.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  73 SLKLDHFSMMFMPVALFVTWSIMEFSMWYMHSDPyINRFFKYLLMFLIT--MMILVTANNMFQLFIGWEGVGIMSFLLIG 150
Cdd:COG1007    65 MFVVDGFALFFKLLILLAALLVLLLSRDYLERRG-LLRGEFYALLLFATlgMMLMASANDLLTLFLGLELLSLSLYVLVA 143

                          90
                  ....*....|...
gi 1215380067 151 WWHGRTDANTAAL 163
Cdd:COG1007   144 FRRDDRRSSEAAL 156
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 65-182 4.03e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 37.49  E-value: 4.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1215380067  65 IQTMKLSLSLKLDHFSMMF-------MPVALFVTWSIMEfsmwymhsdPYINRFFKYLLMFLITMMILVTANNMFQLFIG 137
Cdd:PRK05846   69 IPRFGISYHLGVDGISLLLvvltallTPLAVLASWEEIK---------KRVKFYMAALLWLEGGVIGVFAALDLLLFYVF 139

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1215380067 138 WEGVGIMSFLLIGWWhGRTDANTAALQAILYNRIGDVGF---IMAMAW 182
Cdd:PRK05846  140 FEAMLIPMYFLIGVW-GGKNRIYAATKFFLYTLLGSLLMlvaIIYLVV 186
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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