|
Name |
Accession |
Description |
Interval |
E-value |
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
1-443 |
0e+00 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 757.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 1 MSNDLFASDPAHRPyvpLAERLRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHSMIFWGPPGVGKTTLARLMADGFDAQF 80
Cdd:COG2256 1 MDDAAAEASAANAP---LAERMRPRTLDEVVGQEHLLGPGKPLRRAIEAGRLSSMILWGPPGTGKTTLARLIANATDAEF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 81 IAISAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRAR 160
Cdd:COG2256 78 VALSAVTSGVKDIREVIEEARERRAYGRRTILFVDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNSALLSRCR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 161 VYVLQSLSAEELMQLVDRAVAALNEGLeDGQQIRFEAEAREQLAAWADGDARRLISAVEVVAESAQAAGRDSVDAAWLET 240
Cdd:COG2256 158 VFVLKPLSEEDLEQLLERALADDERGL-GGYKLELDDEALEALARLADGDARRALNALELAVLSAPPDGVIEITLELVEE 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 241 SLSQNLRRFDKGGDAFYDQISALHKSVRGSDPDAALYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNGAD 320
Cdd:COG2256 237 ALQRRALRYDKDGDEHYDLISAFIKSIRGSDPDAALYWLARMLEAGEDPRFIARRLVIMASEDIGLADPQALQIAVAAAQ 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 321 IYERLGSPEGELALAQAVVYMACAAKSNAVYNAYNAARKFAAEHGSAPVPLHLRNAPTKLMKQLGHGKAYRYAHDQPHAY 400
Cdd:COG2256 317 AVERLGMPEGRIALAQAVIYLATAPKSNAAYLAINAALADVREGGSLPVPLHLRNAPTKLMKELGYGKGYKYPHDYPGGY 396
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 1142544250 401 AAdEQYFPDGL-NPTFYRPTDRGLEAKIQQKLAFLDELDAQERA 443
Cdd:COG2256 397 VG-QQYLPDELkGRRYYEPTERGFERKIKERLEKLRKLRRGARE 439
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
17-436 |
0e+00 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 723.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 17 PLAERLRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHSMIFWGPPGVGKTTLARLMADGFDAQFIAISAVLGGVKDIRDA 96
Cdd:PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 97 VVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSAEELMQLV 176
Cdd:PRK13342 81 IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 177 DRAVAALNEGLedgqqIRFEAEAREQLAAWADGDARRLISAVEVVAESAQaagrdSVDAAWLETSLSQNLRRFDKGGDAF 256
Cdd:PRK13342 161 KRALEDKERGL-----VELDDEALDALARLANGDARRALNLLELAALGVD-----SITLELLEEALQKRAARYDKDGDEH 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 257 YDQISALHKSVRGSDPDAALYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNGADIYERLGSPEGELALAQ 336
Cdd:PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALAQ 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 337 AVVYMACAAKSNAVYNAYNAARKFAAEHGSAPVPLHLRNAPTKLMKQLGHGKAYRYAHDQPHAYAAdEQYFPDGL-NPTF 415
Cdd:PRK13342 311 AVIYLALAPKSNAAYTAINAALADVREGGSLPVPLHLRNAPTKLMKELGYGKGYKYPHDYPNGYVG-QQYLPDELkGKRY 389
|
410 420
....*....|....*....|.
gi 1142544250 416 YRPTDRGLEAKIQQKLAFLDE 436
Cdd:PRK13342 390 YEPTERGFEKKIKERLEKLKD 410
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
4-432 |
6.44e-156 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 458.75 E-value: 6.44e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 4 DLFA--SDPAHRPYVPLAERLRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHSMIFWGPPGVGKTTLARLMADGFDAQFI 81
Cdd:PRK13341 2 DLFAfhGEQMSQSEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 82 AISAVLGGVKDIRDAVVTAQVAQGQ-GRRTILFVDEVHRFNKSQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRAR 160
Cdd:PRK13341 82 SLNAVLAGVKDLRAEVDRAKERLERhGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 161 VYVLQSLSAEELMQLVDRAVAALNEGLEDgQQIRFEAEAREQLAAWADGDARRLISAVEVVAES--AQAAGRDSVDAAWL 238
Cdd:PRK13341 162 LFRLKSLSDEDLHQLLKRALQDKERGYGD-RKVDLEPEAEKHLVDVANGDARSLLNALELAVEStpPDEDGLIDITLAIA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 239 ETSLSQNLRRFDKGGDAFYDQISALHKSVRGSDPDAALYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNG 318
Cdd:PRK13341 241 EESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEAC 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 319 ADIYERLGSPEGELALAQAVVYMACAAKSNAVYNAYNAARKfAAEHGSAPVPLHLRNaPTKLMKQLGHGKAYRYahdqPH 398
Cdd:PRK13341 321 AAAFERVGLPEGLYPLAQAALYLATAPKSNSVLGFFDALKK-VREEQVQDVPNHLRD-ANRDGKAFGDGVGYRY----PH 394
|
410 420 430
....*....|....*....|....*....|....*...
gi 1142544250 399 AYAAD---EQYFPDGL-NPTFYRPTDRGLEAKIQQKLA 432
Cdd:PRK13341 395 AFRDHwvaQQYLPEALqGEVFWQPSRQGWEGERRERLA 432
|
|
| MgsA_C |
pfam12002 |
MgsA AAA+ ATPase C terminal; The MgsA protein possesses DNA-dependent ATPase and ssDNA ... |
269-426 |
1.29e-94 |
|
MgsA AAA+ ATPase C terminal; The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication. Additionally, MgsA may play a role in chromosomal segregation. This is consistent with a report that MgsA co-localizes with the replisome and affects chromosome segregation. This domain represents the C terminal region of MgsA.
Pssm-ID: 463426 [Multi-domain] Cd Length: 158 Bit Score: 281.93 E-value: 1.29e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 269 GSDPDAALYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNGADIYERLGSPEGELALAQAVVYMACAAKSN 348
Cdd:pfam12002 1 GSDPDAALYWLARMLEAGEDPLFIARRLVIIASEDIGLADPQALVVAVAAAQAVERIGMPEARIPLAQAVIYLALAPKSN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1142544250 349 AVYNAYNAARKFAAEHGSAPVPLHLRNAPTKLMKQLGHGKAYRYAHDQPHAYAAdEQYFPDGL-NPTFYRPTDRGLEAK 426
Cdd:pfam12002 81 SAYLAIDAALADVREGGSLPVPLHLRNAPTKLMKKLGYGKGYKYPHDYPNGYVK-QQYLPDELkGRRYYEPTDNGYEKK 158
|
|
| PRK14700 |
PRK14700 |
recombination factor protein RarA; Provisional |
129-431 |
1.07e-74 |
|
recombination factor protein RarA; Provisional
Pssm-ID: 173163 [Multi-domain] Cd Length: 300 Bit Score: 236.06 E-value: 1.07e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 129 LPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSAEELMQLVDRAVAalNEGLEDGQQIRFEAEAREQLAAWAD 208
Cdd:PRK14700 1 MPYVESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALS--QDEVLAKHKFKIDDGLYNAMHNYNE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 209 GDARRLISAVEVVAESAQAAGRDSVDAAWLETSLSQNLRRFDKGGDAFYDQISALHKSVRGSDPDAALYWLARMLDGGAD 288
Cdd:PRK14700 79 GDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 289 PKYLARRLVRMAIEDIGLADPRATELAVNGADIYERLGSPEGELALAQAVVYMACAAKSNAVYNAYNAARKFAAEHGSAP 368
Cdd:PRK14700 159 PLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQLVKSLGNID 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1142544250 369 VPLHLRNAPTklmkqlghgKAYRYAHDQPHAYAAdEQYFPDGLNPTFYRPTDRGLEAKIQQKL 431
Cdd:PRK14700 239 VPQHLKNYKD---------SNYLYPHNYPNSYVI-QQYLPDNIIQNFYQPTASGFEAKIKTKL 291
|
|
| AAA_assoc_2 |
pfam16193 |
AAA C-terminal domain; AAA_assoc_2 is found at the C-terminus of a relatively small set of AAA ... |
190-268 |
3.64e-25 |
|
AAA C-terminal domain; AAA_assoc_2 is found at the C-terminus of a relatively small set of AAA domains in proteins ranging from archaeal to fungi, plants and mammals.
Pssm-ID: 465057 Cd Length: 81 Bit Score: 98.31 E-value: 3.64e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 190 GQQIRFEAEAREQLAAWADGDARRLISAVEVVAESAQA-AGRDSVDAAWLETSLSQNLRRFDKGGDAFYDQISALHKSVR 268
Cdd:pfam16193 2 GLKIELDDEALEALAELADGDARRALNALELAVLSTPPdDGGIHITLEILEEALQRKALRYDKDGDEHYDLISAFHKSIR 81
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
24-325 |
4.78e-24 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 102.19 E-value: 4.78e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 24 PRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMA--------DGFDA---------------- 78
Cdd:COG2812 6 PQTFDDVVGQEHVV---RTLKNALASGRlAHAYLFTGPRGVGKTTLARILAkalncengPTGEPcgecescraiaagshp 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 79 --QFIAISAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFL-------PYVesglfTFIGATTenpsf 149
Cdd:COG2812 83 dvIEIDAEASNIGVDDIRELIEKVSYAPVEGRYKVYIIDEAHMLTTEAFNALLktleeppPHV-----VFILATT----- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 150 EVNSAL---LSRARVYVLQSLSAEELMQLVDRAVAALNegledgqqIRFEAEAREQLAAWADGDARRLISAVEvvaesaQ 226
Cdd:COG2812 153 EPQKLLptiLSRCQRFDFRRLPPEEIAEHLAKIAEREG--------IEIEPEALALIARAADGSMRDALSLLD------Q 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 227 AAGRDSVDaawletslsqnlrrfdkggdaFYDQISALHKSVRGSDPDAALYWLARMLDGGADPK----YLARRLVRMAIE 302
Cdd:COG2812 219 AIAFGLLD---------------------RRELLLDLLEALLAGDVAALLALAEELAKRGRDLKrfldDLLSLLRDLLLL 277
|
330 340
....*....|....*....|...
gi 1142544250 303 DIGladprATELAVNGADIYERL 325
Cdd:COG2812 278 KLG-----PDAELLVNEDERERL 295
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
15-216 |
3.97e-18 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 87.07 E-value: 3.97e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 15 YVPLAERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMADGFDAQ-------------- 79
Cdd:PRK08691 3 YQVLARKWRPKTFADLVGQEHVV---KALQNALDEGRlHHAYLLTGTRGVGKTTIARILAKSLNCEnaqhgepcgvcqsc 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 80 ----------FIAISAVLG-GVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIGATTEn 146
Cdd:PRK08691 80 tqidagryvdLLEIDAASNtGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEppEHVKFILATTD- 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 147 pSFEVNSALLSRARVYVLQSLSAEelmQLVDRAVAALnegleDGQQIRFEAEAREQLAAWADGDARRLIS 216
Cdd:PRK08691 159 -PHKVPVTVLSRCLQFVLRNMTAQ---QVADHLAHVL-----DSEKIAYEPPALQLLGRAAAGSMRDALS 219
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
15-221 |
2.26e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 80.30 E-value: 2.26e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 15 YVPLAERLRPRTLSDVVGQSHLlgpDKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMA------------DGFDAQFI 81
Cdd:PRK14970 4 FVVSARKYRPQTFDDVVGQSHI---TNTLLNAIENNHlAQALLFCGPRGVGKTTCARILArkinqpgyddpnEDFSFNIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 82 AISAVLG-GVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIGATTEnpSFEVNSALLSR 158
Cdd:PRK14970 81 ELDAASNnSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEppAHAIFILATTE--KHKIIPTILSR 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1142544250 159 ARVYVLQSLSAEELMQLVdravaalnEGLEDGQQIRFEAEAREQLAAWADGDARRLISAVEVV 221
Cdd:PRK14970 159 CQIFDFKRITIKDIKEHL--------AGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRV 213
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
55-167 |
4.11e-16 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 74.55 E-value: 4.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 55 MIFWGPPGVGKTTLARLMADGFDAQFIAISA-------VLGGVKDIRDAVVTAQvaqgQGRRTILFVDEVHRFNKSQ--- 124
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGselvskyVGESEKRLRELFEAAK----KLAPCVIFIDEIDALAGSRgsg 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1142544250 125 --------QDAFLPYVE-----SGLFTFIGATTEnpSFEVNSALLSRARVYVLQSL 167
Cdd:pfam00004 77 gdsesrrvVNQLLTELDgftssNSKVIVIAATNR--PDKLDPALLGRFDRIIEFPL 130
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
15-268 |
4.38e-15 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 77.40 E-value: 4.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 15 YVPLAERLRPRTLSDVVGQSHLlgpDKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMADGFDAQ-------------- 79
Cdd:PRK14960 2 YQVLARKYRPRNFNELVGQNHV---SRALSSALERGRlHHAYLFTGTRGVGKTTIARILAKCLNCEtgvtstpcevcatc 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 80 -------FIAI----SAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIGATTEN 146
Cdd:PRK14960 79 kavnegrFIDLieidAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEppEHVKFLFATTDP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 147 PSFEVnsALLSRARVYVLQSLSAEElmqlVDRAVAALNEgledGQQIRFEAEAREQLAAWADGDARRLISavevVAESAQ 226
Cdd:PRK14960 159 QKLPI--TVISRCLQFTLRPLAVDE----ITKHLGAILE----KEQIAADQDAIWQIAESAQGSLRDALS----LTDQAI 224
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1142544250 227 AAGRDSVDaawlETSLSQNLRRFDKggDAFYDQISALHKSVR 268
Cdd:PRK14960 225 AYGQGAVH----HQDVKEMLGLIDR--TIIYDLILAVHQNQR 260
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
18-297 |
1.02e-14 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 76.39 E-value: 1.02e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 18 LAERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMA----------------------- 73
Cdd:PRK14950 6 LYRKWRSQTFAELVGQEHVV---QTLRNAIAEGRvAHAYLFTGPRGVGKTSTARILAkavncttndpkgrpcgtcemcra 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 74 --DGFDAQFIAISAVLG-GVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIGATTEnpS 148
Cdd:PRK14950 83 iaEGSAVDVIEMDAASHtSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEppPHAIFILATTE--V 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 149 FEVNSALLSRARVYVLQSLSAEELMQLVDRAVAAlnEGledgqqIRFEAEAREQLAAWADGDARRLISAVEVVAESAQAa 228
Cdd:PRK14950 161 HKVPATILSRCQRFDFHRHSVADMAAHLRKIAAA--EG------INLEPGALEAIARAATGSMRDAENLLQQLATTYGG- 231
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1142544250 229 grdsvdaawlETSLSQNLRRFDKGGDafyDQISALHKSVRGSDPDAALYWLARMLDGGADPKYLARRLV 297
Cdd:PRK14950 232 ----------EISLSQVQSLLGISGD---EEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLV 287
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
15-223 |
3.84e-14 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 74.09 E-value: 3.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 15 YVPLAERLRPRTLSDVVGQSHllgPDKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMAD------------------- 74
Cdd:PRK14953 3 YIPFARKYRPKFFKEVIGQEI---VVRILKNAVKLQRvSHAYIFAGPRGTGKTTIARILAKvlnclnpqegepcgkcenc 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 75 -----GFDAQFIAISAVLG-GVKDIR---DAVVTAQVaqgQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIGAT 143
Cdd:PRK14953 80 veidkGSFPDLIEIDAASNrGIDDIRalrDAVSYTPI---KGKYKVYIIDEAHMLTKEAFNALLKTLEEppPRTIFILCT 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 144 TEnpSFEVNSALLSRARVYVLQSLSAEELMQLVDRavaALNEgledgQQIRFEAEAREQLAAWADG---DARRLISAVEV 220
Cdd:PRK14953 157 TE--YDKIPPTILSRCQRFIFSKPTKEQIKEYLKR---ICNE-----EKIEYEEKALDLLAQASEGgmrDAASLLDQAST 226
|
...
gi 1142544250 221 VAE 223
Cdd:PRK14953 227 YGE 229
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
15-216 |
2.64e-13 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 71.73 E-value: 2.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 15 YVPLAERLRPRTLSDVVGQSHLLGPdkpLRVAFDSGR-PHSMIFWGPPGVGKTTLAR----------LMADG-------- 75
Cdd:PRK14971 4 YIVSARKYRPSTFESVVGQEALTTT---LKNAIATNKlAHAYLFCGPRGVGKTTCARifaktincqnLTADGeacneces 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 76 ---FDAQ-------FIAISAvlGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIGAT 143
Cdd:PRK14971 81 cvaFNEQrsyniheLDAASN--NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEppSYAIFILAT 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1142544250 144 TENpsFEVNSALLSRARVYVLQSLSAEELMQLVdRAVAALnEGledgqqIRFEAEAREQLAAWADGDARRLIS 216
Cdd:PRK14971 159 TEK--HKILPTILSRCQIFDFNRIQVADIVNHL-QYVASK-EG------ITAEPEALNVIAQKADGGMRDALS 221
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
5-189 |
2.67e-13 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 70.54 E-value: 2.67e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 5 LFASDPAHRPYVPLAERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR------PHsMIFWGPPGVGKTTLARLMADGFDA 78
Cdd:PRK00080 2 LVSPETLEEEEDEIERSLRPKSLDEFIGQEKVK---ENLKIFIEAAKkrgealDH-VLLYGPPGLGKTTLANIIANEMGV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 79 QFIAISA-VLGGVKDIRdAVVTaqvaqGQGRRTILFVDEVHRFNKSqqdaflpyVESGL--------------------- 136
Cdd:PRK00080 78 NIRITSGpALEKPGDLA-AILT-----NLEEGDVLFIDEIHRLSPV--------VEEILypamedfrldimigkgpaars 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1142544250 137 -------FTFIGATTEnpsfevnSALLS---RARVYVLQSL---SAEELMQLVDRAVAALNEGLED 189
Cdd:PRK00080 144 irldlppFTLIGATTR-------AGLLTsplRDRFGIVQRLefyTVEELEKIVKRSARILGVEIDE 202
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
15-226 |
4.13e-13 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 71.04 E-value: 4.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 15 YVPLAERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMADGFD---------------- 77
Cdd:PRK06645 8 YIPFARKYRPSNFAELQGQEVLV---KVLSYTILNDRlAGGYLLTGIRGVGKTTSARIIAKAVNcsalitenttiktceq 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 78 ------------AQFIAISAV-LGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIGA 142
Cdd:PRK06645 85 ctncisfnnhnhPDIIEIDAAsKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEppPHIIFIFA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 143 TTENPsfEVNSALLSRARVYVLQSLSAEELMQLVDRAVAALNegledgqqIRFEAEAREQLAAWADGDARRLISAVEVVA 222
Cdd:PRK06645 165 TTEVQ--KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN--------LKTDIEALRIIAYKSEGSARDAVSILDQAA 234
|
....
gi 1142544250 223 ESAQ 226
Cdd:PRK06645 235 SMSA 238
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
31-158 |
5.88e-13 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 66.40 E-value: 5.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 31 VGQSHLLgpdKPLRVAFDSGRPHSMIFWGPPGVGKTTLARLMA---DGFDAQFIAISA--------VLGGVKDIRDAVVT 99
Cdd:cd00009 1 VGQEEAI---EALREALELPPPKNLLLYGPPGTGKTTLARAIAnelFRPGAPFLYLNAsdlleglvVAELFGHFLVRLLF 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1142544250 100 AQVAQGQGrrTILFVDEVHRFNKSQQDAFLP--------YVESGLFTFIGATTENPSFEVNSALLSR 158
Cdd:cd00009 78 ELAEKAKP--GVLFIDEIDSLSRGAQNALLRvletlndlRIDRENVRVIGATNRPLLGDLDRALYDR 142
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
15-219 |
6.46e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 69.84 E-value: 6.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 15 YVPLAERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMADGFDAQ-------------- 79
Cdd:PRK14961 3 YQILARKWRPQYFRDIIGQKHIV---TAISNGLSLGRiHHAWLLSGTRGVGKTTIARLLAKSLNCQngitsnpcrkciic 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 80 ----------FIAI-SAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVESG--LFTFIGATTEN 146
Cdd:PRK14961 80 keiekglcldLIEIdAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPpqHIKFILATTDV 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1142544250 147 PsfEVNSALLSRARVYVLQSLSAEELmqlvdraVAALNEGLEDGqQIRFEAEAREQLAAWADGDARRLISAVE 219
Cdd:PRK14961 160 E--KIPKTILSRCLQFKLKIISEEKI-------FNFLKYILIKE-SIDTDEYALKLIAYHAHGSMRDALNLLE 222
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
1-189 |
2.51e-12 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 67.80 E-value: 2.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 1 MSNDLFASDPAHRPYVPLAERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR------PHsMIFWGPPGVGKTTLARLMAD 74
Cdd:COG2255 1 MAEEDRLSSSASEEEDALERSLRPKRLDEYIGQEKVK---ENLKIFIEAAKkrgealDH-VLLYGPPGLGKTTLAHIIAN 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 75 GFDAQFIAISA-VLGGVKDIRdAVVTaqvaqGQGRRTILFVDEVHRFNKSqqdaflpyVESGL----------------- 136
Cdd:COG2255 77 EMGVNIRITSGpAIEKPGDLA-AILT-----NLEEGDVLFIDEIHRLSRV--------VEEILypamedfrldivigkgp 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 137 -----------FTFIGATTenpsfevNSALLS---RARVYVLQSL---SAEELMQLVDRAVAALNEGLED 189
Cdd:COG2255 143 aarsirldlppFTLVGATT-------RAGLLTsplRDRFGIVLRLefyTVEELAEIVKRSARILGVEIDE 205
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
15-335 |
2.68e-12 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 68.61 E-value: 2.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 15 YVPLAERLRPRTLSDVVGQSHLlgpDKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMA-------------------- 73
Cdd:PRK14965 3 YLVLARKYRPQTFSDLTGQEHV---SRTLQNAIDTGRvAHAFLFTGARGVGKTSTARILAkalnceqgltaepcnvcppc 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 74 ----DGFDAQFIAI-SAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFL-------PYVEsglftFIG 141
Cdd:PRK14965 80 veitEGRSVDVFEIdGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLktleeppPHVK-----FIF 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 142 ATTEnpSFEVNSALLSRARVYVLQSLSaeeLMQLVDRavaaLNEgLEDGQQIRFEAEAREQLAAWADGDARRLISAVEVV 221
Cdd:PRK14965 155 ATTE--PHKVPITILSRCQRFDFRRIP---LQKIVDR----LRY-IADQEGISISDAALALVARKGDGSMRDSLSTLDQV 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 222 aesaQAAGRDSVDAAWLETSLSQNLRRFdkggdafydqISALHKSVRGSDPDAALYWLARMLDGGADPKYLAR------- 294
Cdd:PRK14965 225 ----LAFCGDAVGDDDVAELLGVVDRRL----------LLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQelidhlr 290
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1142544250 295 -----RLVRMAIEDIGLADPRATEL-----AVNGADIYERLG---SPEGELALA 335
Cdd:PRK14965 291 nlvvlRAVGEPGDLLDLSEAELAELraqaaAADAADLQRHLTlllRAEGEMAHA 344
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
15-222 |
3.55e-12 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 68.31 E-value: 3.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 15 YVPLAERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMA-------------------D 74
Cdd:PRK07133 5 YKALYRKYRPKTFDDIVGQDHIV---QTLKNIIKSNKiSHAYLFSGPRGTGKTSVAKIFAnalncshktdllepcqeciE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 75 GFDAQF--IAISAVLG-GVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIGATTEnpSF 149
Cdd:PRK07133 82 NVNNSLdiIEMDAASNnGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEppKHVIFILATTE--VH 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1142544250 150 EVNSALLSRARVYVLQSLSAEELmqlvdraVAALNEGLEDgQQIRFEAEAREQLAAWADGDARRLISAVEVVA 222
Cdd:PRK07133 160 KIPLTILSRVQRFNFRRISEDEI-------VSRLEFILEK-ENISYEKNALKLIAKLSSGSLRDALSIAEQVS 224
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
18-236 |
6.44e-12 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 67.17 E-value: 6.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 18 LAERLRPRTLSDVVGQSHLlgpDKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMA----------------------- 73
Cdd:PRK14963 4 LYQRARPITFDEVVGQEHV---KEVLLAALRQGRlGHAYLFSGPRGVGKTTTARLIAmavncsgedpkpcgecesclavr 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 74 DGFDAQFIAISAVL-GGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIGATTEnPSfE 150
Cdd:PRK14963 81 RGAHPDVLEIDAASnNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEppEHVIFILATTE-PE-K 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 151 VNSALLSRARVYVLQSLSAEELMQLVDRAVAALNegledgqqIRFEAEAREQLAAWADGDARRLISAVEVVAESAQAAGR 230
Cdd:PRK14963 159 MPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEG--------REAEPEALQLVARLADGAMRDAESLLERLLALGTPVTR 230
|
....*.
gi 1142544250 231 DSVDAA 236
Cdd:PRK14963 231 KQVEEA 236
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
22-167 |
7.07e-12 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 63.29 E-value: 7.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 22 LRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-----PHSMIFWGPPGVGKTTLARLMADGFDAQFIAISA-VLGGVKDIrd 95
Cdd:pfam05496 1 LRPRTLDEYIGQEKVK---ENLKIFIEAAKqrgeaLDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGpAIERPGDL-- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 96 avvtAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVE---------SGL-----------FTFIGATTEnpsfevnSAL 155
Cdd:pfam05496 76 ----AAILTNLEPGDVLFIDEIHRLNRAVEEILYPAMEdfrldivigKGPsarsirldlppFTLVGATTR-------AGL 144
|
170
....*....|....*
gi 1142544250 156 LS---RARVYVLQSL 167
Cdd:pfam05496 145 LTsplRDRFGIVLRL 159
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
15-219 |
8.41e-12 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 67.03 E-value: 8.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 15 YVPLAERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMAD------GFDAQ-------- 79
Cdd:PRK14957 3 YQALARKYRPQSFAEVAGQQHAL---NSLVHALETQKvHHAYLFTGTRGVGKTTLGRLLAKclncktGVTAEpcnkcenc 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 80 -------FIAI----SAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIGATTEN 146
Cdd:PRK14957 80 vainnnsFIDLieidAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEppEYVKFILATTDY 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1142544250 147 PSFEVnsALLSRARVYVLQSLSAEELMqlvDRAVAALNEgledgQQIRFEAEAREQLAAWADGDARRLISAVE 219
Cdd:PRK14957 160 HKIPV--TILSRCIQLHLKHISQADIK---DQLKIILAK-----ENINSDEQSLEYIAYHAKGSLRDALSLLD 222
|
|
| ruvB |
TIGR00635 |
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions ... |
25-234 |
2.35e-11 |
|
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129721 [Multi-domain] Cd Length: 305 Bit Score: 64.24 E-value: 2.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 25 RTLSDVVGQSHLLgpdKPLRVAFDSGR-----PHSMIFWGPPGVGKTTLARLMADGFDAQFIAISA-VLGGVKDIRDAVV 98
Cdd:TIGR00635 1 KLLAEFIGQEKVK---EQLQLFIEAAKmrqeaLDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGpALEKPGDLAAILT 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 99 TAQvaqgqgRRTILFVDEVHRFNKSQQDAFLPYVE---------SGL-----------FTFIGATTEnpSFEVNSALLSR 158
Cdd:TIGR00635 78 NLE------EGDVLFIDEIHRLSPAVEELLYPAMEdfrldivigKGPsarsvrldlppFTLVGATTR--AGMLTSPLRDR 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1142544250 159 -ARVYVLQSLSAEELMQLVDRAVAALNegledgqqIRFEAEAREQLAAWADGDARRLISAVEVVAESAQAAGRDSVD 234
Cdd:TIGR00635 150 fGIILRLEFYTVEELAEIVSRSAGLLN--------VEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIIN 218
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
16-280 |
3.06e-11 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 64.94 E-value: 3.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 16 VPLAERLRPRTLSDVVGQshllgpDKPLRV------AFDSGRPH-SMIFWGPPGVGKTTLARLMADGFDAQFIAISAvlg 88
Cdd:PRK04195 2 MPWVEKYRPKTLSDVVGN------EKAKEQlrewieSWLKGKPKkALLLYGPPGVGKTSLAHALANDYGWEVIELNA--- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 89 gvKDIRDAVVTAQVAQ---------GQGRRTILFvDEVhrfnksqqDAFLPYVESGlftfiGA--------TTENP---- 147
Cdd:PRK04195 73 --SDQRTADVIERVAGeaatsgslfGARRKLILL-DEV--------DGIHGNEDRG-----GArailelikKAKQPiilt 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 148 ---SFEVNSA-LLSRARVYVLQSLSAEELMQLVDRavAALNEGLEdgqqirFEAEAREQLAAWADGDARRLISAVEVVAE 223
Cdd:PRK04195 137 andPYDPSLReLRNACLMIEFKRLSTRSIVPVLKR--ICRKEGIE------CDDEALKEIAERSGGDLRSAINDLQAIAE 208
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1142544250 224 saqaaGRDSVDAAWLETSLSQNLRR--FDKGGDAFY-DQISALHKSVRGSD--PDAALYWLA 280
Cdd:PRK04195 209 -----GYGKLTLEDVKTLGRRDREEsiFDALDAVFKaRNADQALEASYDVDedPDDLIEWID 265
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
18-190 |
3.26e-11 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 65.29 E-value: 3.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 18 LAERLRPRTLSDVVGQSHLLGpdkPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMADGFDA-------------QFIAI 83
Cdd:PRK14952 3 LYRKYRPATFAEVVGQEHVTE---PLSSALDAGRiNHAYLFSGPRGCGKTSSARILARSLNCaqgptatpcgvceSCVAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 84 --------------SAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIGATTEnP 147
Cdd:PRK14952 80 apngpgsidvveldAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEppEHLIFIFATTE-P 158
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1142544250 148 SfEVNSALLSRARVYVLQSLSAEELMQLVDRAVAALNEGLEDG 190
Cdd:PRK14952 159 E-KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDA 200
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
14-236 |
3.87e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 64.77 E-value: 3.87e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 14 PYVPLAERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMADGFDAQ------------- 79
Cdd:PRK14969 2 SYQVLARKWRPKSFSELVGQEHVV---RALTNALEQQRlHHAYLFTGTRGVGKTTLARILAKSLNCEtgvtatpcgvcsa 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 80 --------FIAI----SAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIGATTE 145
Cdd:PRK14969 79 cleidsgrFVDLievdAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEppEHVKFILATTD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 146 NPSFEVnsALLSRARVYVLQSLSAEELmqlvdraVAALNEGLEDgQQIRFEAEAREQLAAWADGDARRLISavevVAESA 225
Cdd:PRK14969 159 PQKIPV--TVLSRCLQFNLKQMPPPLI-------VSHLQHILEQ-ENIPFDATALQLLARAAAGSMRDALS----LLDQA 224
|
250
....*....|.
gi 1142544250 226 QAAGRDSVDAA 236
Cdd:PRK14969 225 IAYGGGTVNES 235
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
18-219 |
4.61e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 64.58 E-value: 4.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 18 LAERLRPRTLSDVVGQSHLLGPdkpLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMAD---------------------- 74
Cdd:PRK14956 8 LSRKYRPQFFRDVIHQDLAIGA---LQNALKSGKiGHAYIFFGPRGVGKTTIARILAKrlncenpignepcnectsclei 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 75 --GFDAQFIAISAVLG-GVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIGATTEnpSF 149
Cdd:PRK14956 85 tkGISSDVLEIDAASNrGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEppAHIVFILATTE--FH 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 150 EVNSALLSRARVYVLQSLSAEELMQLVdravaalnEGLEDGQQIRFEAEAREQLAAWADGDARRLISAVE 219
Cdd:PRK14956 163 KIPETILSRCQDFIFKKVPLSVLQDYS--------EKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFME 224
|
|
| HLD_clamp_RarA |
cd18139 |
helical lid domain of recombination factor protein RarA; Recombination factor RarA ... |
167-242 |
4.93e-11 |
|
helical lid domain of recombination factor protein RarA; Recombination factor RarA (Replication associated recombination gene/protein A, also known as MgsA (Maintenance of genome stability A) or Mgs1 in yeast and WRNIP1 in mammals) is a member of the clamp-loader clade of the AAA+ superfamily. It functions as a tetramer. RarA co-localize with the replication fork throughout the cell cycle and may play a role in the rescue of stalled replication forks.
Pssm-ID: 350841 [Multi-domain] Cd Length: 75 Bit Score: 58.41 E-value: 4.93e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1142544250 167 LSAEELMQLVDRAVAALNEGLEdgQQIRFEAEAREQLAAWADGDARRLISAVEVVAESAQAAGRDSVDAAWLETSL 242
Cdd:cd18139 1 LSEEDLEKLLKRALEDKERGGD--RKVTIDDEALELLAEAADGDARSALNLLELAVLSAEEDGGIVITLEDLEEVL 74
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
7-289 |
9.24e-11 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 63.77 E-value: 9.24e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 7 ASDPAHRPYVPLAERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMA--------DGFD 77
Cdd:PRK09111 3 DAAAAATPYRVLARKYRPQTFDDLIGQEAMV---RTLTNAFETGRiAQAFMLTGVRGVGKTTTARILAralnyegpDGDG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 78 AQFI----------AISA-----VL-------GGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFL------ 129
Cdd:PRK09111 80 GPTIdlcgvgehcqAIMEgrhvdVLemdaashTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLktleep 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 130 -PYVesglfTFIGATTENPSFEVnsALLSRARVYVLQSLSAEELMQLVDRaVAALnEGLEdgqqirFEAEAREQLAAWAD 208
Cdd:PRK09111 160 pPHV-----KFIFATTEIRKVPV--TVLSRCQRFDLRRIEADVLAAHLSR-IAAK-EGVE------VEDEALALIARAAE 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 209 GDARRLIS----AVevvaesAQAAGRDSVDAawletsLSQNLRRFDKGgdafyDQISALHKSVRGsDPDAALYWLARMLD 284
Cdd:PRK09111 225 GSVRDGLSlldqAI------AHGAGEVTAEA------VRDMLGLADRA-----RVIDLFEALMRG-DVAAALAEFRAQYD 286
|
....*
gi 1142544250 285 GGADP 289
Cdd:PRK09111 287 AGADP 291
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
20-188 |
1.52e-10 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 61.93 E-value: 1.52e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 20 ERLRPRTLSDVVGQSHllgpDKPLRVAF-DSGRPHSMIFWGP-PGVGKTTLARLMADGFDAQFIAISAVLGGVKDIRDAV 97
Cdd:PHA02544 13 QKYRPSTIDECILPAA----DKETFKSIvKKGRIPNMLLHSPsPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNRL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 98 VT-AQVAQGQGRRTILFVDEVHRfnksqqdAFLPYVESGLFTFIGATTENPSF--------EVNSALLSRARVYVLQSLS 168
Cdd:PHA02544 89 TRfASTVSLTGGGKVIIIDEFDR-------LGLADAQRHLRSFMEAYSKNCSFiitannknGIIEPLRSRCRVIDFGVPT 161
|
170 180
....*....|....*....|....*
gi 1142544250 169 AEE---LM-QLVDRAVAAL-NEGLE 188
Cdd:PHA02544 162 KEEqieMMkQMIVRCKGILeAEGVE 186
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
18-225 |
1.73e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 62.86 E-value: 1.73e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 18 LAERLRPRTLSDVVGQSH----LLGPDKPLRVAfdsgrpHSMIFWGPPGVGKTTLARLMADGFDAQ-------------- 79
Cdd:PRK14962 4 LYRKYRPKTFSEVVGQDHvkklIINALKKNSIS------HAYIFAGPRGTGKTTVARILAKSLNCEnrkgvepcnecrac 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 80 ----------FIAISAV----LGGVKDIRDAVVTAQVaqgQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIGAT 143
Cdd:PRK14962 78 rsidegtfmdVIELDAAsnrgIDEIRKIRDAVGYRPM---EGKYKVYIIDEVHMLTKEAFNALLKTLEEppSHVVFVLAT 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 144 TeNPSfEVNSALLSRARVYVLQSLSAEELMQLVdRAVAAlNEGledgqqIRFEAEAREQLAAWADGDARRLISAVEVVAE 223
Cdd:PRK14962 155 T-NLE-KVPPTIISRCQVIEFRNISDELIIKRL-QEVAE-AEG------IEIDREALSFIAKRASGGLRDALTMLEQVWK 224
|
..
gi 1142544250 224 SA 225
Cdd:PRK14962 225 FS 226
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
43-313 |
4.49e-10 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 60.37 E-value: 4.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 43 LRVAFDSGR-PHSMIFWGPPGVGKTTLA-----------------------RLMADGFDAQFIAISAVLG----GVKDIR 94
Cdd:COG0470 8 LLAAAESGRlPHALLLHGPPGIGKTTLAlalardllcenpeggkacgqchsRLMAAGNHPDLLELNPEEKsdqiGIDQIR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 95 DAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLP----YVESGLFTFIgatTENPsfevnSALL----SRARVYVLQS 166
Cdd:COG0470 88 ELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKtleePPKNTPFILI---ANDP-----SRLLptirSRCQVIRFRP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 167 LSAEElmqlvdrAVAALN-EGLEDgqqirfeaEAREQLAAWADGDARRLISAVEVVAESAQaagrdsvdaawletsLSQN 245
Cdd:COG0470 160 PSEEE-------ALAWLReEGVDE--------DALEAILRLAGGDPRAAINLLQALAGRKE---------------LLED 209
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1142544250 246 LRRFDKGGDAFydqisALHKSVRGSDPDAALYWLARMLDGGADPKYLARRLVRmAIEDIGLADPRATE 313
Cdd:COG0470 210 LAALLSRDRAL-----ELLDALLKAEALELLDWLLKWLLDNLPLEYAGEDLAR-AYEALSEADRRLGR 271
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
16-244 |
5.08e-10 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 61.08 E-value: 5.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 16 VPLAERLRPRTLSDVVG----------QSHLLGPDKPLRVAFDSGRPHSMIFWGPPGVGKTTLARLMADGFDAQFIAI-- 83
Cdd:COG0464 145 EEELLELREAILDDLGGleevkeelreLVALPLKRPELREEYGLPPPRGLLLYGPPGTGKTLLARALAGELGLPLIEVdl 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 84 SAVLGG-----VKDIRDAVVTAQvaqgQGRRTILFVDEV-----------HRFNKSQQDAFL---PYVESGLFtFIGATt 144
Cdd:COG0464 225 SDLVSKyvgetEKNLREVFDKAR----GLAPCVLFIDEAdalagkrgevgDGVGRRVVNTLLtemEELRSDVV-VIAAT- 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 145 eNPSFEVNSALLSR-ARVYVLQSLSAEELMQLVDRAVAALneGLEDGQQIRFEAEAREQLAAwadGDARrliSAVEVVAE 223
Cdd:COG0464 299 -NRPDLLDPALLRRfDEIIFFPLPDAEERLEIFRIHLRKR--PLDEDVDLEELAEATEGLSG---ADIR---NVVRRAAL 369
|
250 260
....*....|....*....|.
gi 1142544250 224 SAQAAGRDSVDAAWLETSLSQ 244
Cdd:COG0464 370 QALRLGREPVTTEDLLEALER 390
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
23-216 |
6.04e-10 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 61.40 E-value: 6.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 23 RPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMADGFDA---------------------QF 80
Cdd:PRK05896 11 RPHNFKQIIGQELIK---KILVNAILNNKlTHAYIFSGPRGIGKTSIAKIFAKAINClnpkdgdccnscsvcesintnQS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 81 IAI----SAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVESG--LFTFIGATTEnpSFEVNSA 154
Cdd:PRK05896 88 VDIveldAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPpkHVVFIFATTE--FQKIPLT 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1142544250 155 LLSRARVYVLQSLSAEELMQLVDRAVAAlnegledgQQIRFEAEAREQLAAWADGDARRLIS 216
Cdd:PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKK--------EKIKIEDNAIDKIADLADGSLRDGLS 219
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
14-212 |
7.86e-10 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 60.56 E-value: 7.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 14 PYVPLAERLRPRTLSDVVGQSHLLGPDKPL----RVAfdsgrpHSMIFWGPPGVGKTTLARLMADGFDAQ---------- 79
Cdd:PRK06305 3 SYQVSSRKYRPQTFSEILGQDAVVAVLKNAlrfnRAA------HAYLFSGIRGTGKTTLARIFAKALNCQnptedqepcn 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 80 --FIAISAVLG--------------GVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIG 141
Cdd:PRK06305 77 qcASCKEISSGtsldvleidgashrGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEppQHVKFFL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1142544250 142 ATTENpsFEVNSALLSRARVYVLQSLSAEELMQLVDRavaalnegLEDGQQIRFEAEAREQLAAWADGDAR 212
Cdd:PRK06305 157 ATTEI--HKIPGTILSRCQKMHLKRIPEETIIDKLAL--------IAKQEGIETSREALLPIARAAQGSLR 217
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
15-338 |
1.32e-09 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 60.27 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 15 YVPLAERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMAD-----GFDAQ--------- 79
Cdd:PRK12323 3 YQVLARKWRPRDFTTLVGQEHVV---RALTHALEQQRlHHAYLFTGTRGVGKTTLSRILAKslnctGADGEggitaqpcg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 80 ---------------FIAISAVLG-GVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIG 141
Cdd:PRK12323 80 qcracteidagrfvdYIEMDAASNrGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEppEHVKFIL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 142 ATTENPSFEVnsALLSRARVYVLQSLSAEELMQLVDRAVAAlnegledgQQIRFEAEAREQLAAWADGDARRLISAVEVV 221
Cdd:PRK12323 160 ATTDPQKIPV--TVLSRCLQFNLKQMPPGHIVSHLDAILGE--------EGIAHEVNALRLLAQAAQGSMRDALSLTDQA 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 222 AesAQAAGRDSVDAawletslsqnlrrfdkggdafydqisalhksVRGsdpdaalywlarMLdGGADPKYLARRLVRMAI 301
Cdd:PRK12323 230 I--AYSAGNVSEEA-------------------------------VRG------------ML-GAIDQSYLVRLLDALAA 263
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1142544250 302 ED----IGLADPRATE-LAVNGAdiYERLGSPEGELALAQAV 338
Cdd:PRK12323 264 EDgaalLAIADEMAGRsLSFAGA--LQDLASLLQKIALAQVV 303
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
15-233 |
1.42e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 59.52 E-value: 1.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 15 YVPLAERLRPRTLSDVVGQSHLLGPdkpLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMADG------------------ 75
Cdd:PRK14955 3 YQVIARKYRPKKFADITAQEHITRT---IQNSLRMGRvGHGYIFSGLRGVGKTTAARVFAKAvncqrmiddadylqevte 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 76 ----------FDA-------QFIAISAvlGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GL 136
Cdd:PRK14955 80 pcgecescrdFDAgtslnisEFDAASN--NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEppPH 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 137 FTFIGATTEnpSFEVNSALLSRARVYVLQSLSAEELMQLVdravaalnEGLEDGQQIRFEAEAREQLAAWADGDARRLIS 216
Cdd:PRK14955 158 AIFIFATTE--LHKIPATIASRCQRFNFKRIPLEEIQQQL--------QGICEAEGISVDADALQLIGRKAQGSMRDAQS 227
|
250
....*....|....*...
gi 1142544250 217 AV-EVVAESAQAAGRDSV 233
Cdd:PRK14955 228 ILdQVIAFSVESEGEGSI 245
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
15-212 |
1.69e-09 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 59.88 E-value: 1.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 15 YVPLAERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMADGF----------------- 76
Cdd:PRK07994 3 YQVLARKWRPQTFAEVVGQEHVL---TALANALDLGRlHHAYLFSGTRGVGKTTIARLLAKGLncetgitatpcgecdnc 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 77 --------------DAqfiaisAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVH-----RFNksqqdAFL-------P 130
Cdd:PRK07994 80 reieqgrfvdlieiDA------ASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHmlsrhSFN-----ALLktleeppE 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 131 YVEsglftFIGATTENPSFEVnsALLSRARVYVLQSLSAEELMQLVDRAVAAlnegledgQQIRFEAEAREQLAAWADGD 210
Cdd:PRK07994 149 HVK-----FLLATTDPQKLPV--TILSRCLQFHLKALDVEQIRQQLEHILQA--------EQIPFEPRALQLLARAADGS 213
|
..
gi 1142544250 211 AR 212
Cdd:PRK07994 214 MR 215
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
43-233 |
1.98e-09 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 59.09 E-value: 1.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 43 LRVAFDSGRPHSMIFWGPPGVGKTTLARLMAD---------GFDAQFI------------AISAVLGGV----------- 90
Cdd:COG1474 42 LRPALRGERPSNVLIYGPTGTGKTAVAKYVLEeleeeaeerGVDVRVVyvncrqastryrVLSRILEELgsgedipstgl 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 91 --KDIRDAVVTAQVAQGqgRRTILFVDEVHRFNKSQQDAFLpY--------VESGLFTFIGATTEnpsFEVNSALLSRar 160
Cdd:COG1474 122 stDELFDRLYEALDERD--GVLVVVLDEIDYLVDDEGDDLL-YqllraneeLEGARVGVIGISND---LEFLENLDPR-- 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 161 vyVLQSLSAEELM-------QLVD----RAVAALNEG-LEDGQqIRFEAEareqLAAWADGDARRLISAVEVVAESAQAA 228
Cdd:COG1474 194 --VKSSLGEEEIVfppydadELRDiledRAELAFYDGvLSDEV-IPLIAA----LAAQEHGDARKAIDLLRVAGEIAERE 266
|
....*
gi 1142544250 229 GRDSV 233
Cdd:COG1474 267 GSDRV 271
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
18-219 |
2.19e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 59.36 E-value: 2.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 18 LAERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMADGFDAQ----------------- 79
Cdd:PRK14958 6 LARKWRPRCFQEVIGQAPVV---RALSNALDQQYlHHAYLFTGTRGVGKTTISRILAKCLNCEkgvsanpcndcencrei 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 80 --------FIAISAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIGATTENPSF 149
Cdd:PRK14958 83 degrfpdlFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEppSHVKFILATTDHHKL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 150 EVnsALLSRARVYvlqslsaeELMQLVDRAVAALNEGLEDGQQIRFEAEAREQLAAWADGDARRLISAVE 219
Cdd:PRK14958 163 PV--TVLSRCLQF--------HLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLD 222
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
19-212 |
1.15e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 57.09 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 19 AERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMADGFDAQ------------------ 79
Cdd:PRK06647 7 ATKRRPRDFNSLEGQDFVV---ETLKHSIESNKiANAYIFSGPRGVGKTSSARAFARCLNCVngptpmpcgecsscksid 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 80 ------FIAIS-AVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFL-------PYVesglfTFIGATTE 145
Cdd:PRK06647 84 ndnsldVIEIDgASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLktieeppPYI-----VFIFATTE 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1142544250 146 npSFEVNSALLSRARVYVLQSLSAEELMQLVDRAVAalneglEDgqQIRFEAEAREQLAAWADGDAR 212
Cdd:PRK06647 159 --VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCL------ED--QIKYEDEALKWIAYKSTGSVR 215
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
18-219 |
4.11e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 55.18 E-value: 4.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 18 LAERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMA------DG--FD-----AQFIAI 83
Cdd:PRK14964 3 LALKYRPSSFKDLVGQDVLV---RILRNAFTLNKiPQSILLVGASGVGKTTCARIISlclncsNGptSDpcgtcHNCISI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 84 ------------SAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFL-------PYVEsglftFIGATT 144
Cdd:PRK14964 80 knsnhpdvieidAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLktleepaPHVK-----FILATT 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1142544250 145 ENPSFEVnsALLSRARVYVLQSLSAEelmQLVDRAVA-ALNEGledgqqIRFEAEAREQLAAWADGDARRLISAVE 219
Cdd:PRK14964 155 EVKKIPV--TIISRCQRFDLQKIPTD---KLVEHLVDiAKKEN------IEHDEESLKLIAENSSGSMRNALFLLE 219
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
20-227 |
5.45e-08 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 54.22 E-value: 5.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 20 ERLRPRTLSDVVGQSHllgPDKPLRVAFDSGRPHSMIFWGPPGVGKTTLARLMA-----DGFDAQFIAISA--------- 85
Cdd:PRK12402 7 EKYRPALLEDILGQDE---VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALArelygDPWENNFTEFNVadffdqgkk 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 86 ----------VLGGVKDIRDAVV---------TAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVE--SGLFTFIGATT 144
Cdd:PRK12402 84 ylvedprfahFLGTDKRIRSSKIdnfkhvlkeYASYRPLSADYKTILLDNAEALREDAQQALRRIMEqySRTCRFIIATR 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 145 eNPSfEVNSALLSRARVYVLQSLSAEELMQLVDRAVAAlnEGLEdgqqirFEAEAREQLAAWADGDARRLISAVEVVAES 224
Cdd:PRK12402 164 -QPS-KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEA--EGVD------YDDDGLELIAYYAGGDLRKAILTLQTAALA 233
|
...
gi 1142544250 225 AQA 227
Cdd:PRK12402 234 AGE 236
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
15-216 |
5.56e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 55.12 E-value: 5.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 15 YVPLAERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMADGFD---------------- 77
Cdd:PRK14949 3 YQVLARKWRPATFEQMVGQSHVL---HALTNALTQQRlHHAYLFTGTRGVGKTSLARLFAKGLNceqgvtatpcgvcssc 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 78 ---AQ--FIAI----SAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIGATTEN 146
Cdd:PRK14949 80 veiAQgrFVDLievdAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEppEHVKFLLATTDP 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 147 PSFEVnsALLSRARVYVLQSLSAEELMQlvdravaALNEGLEDgQQIRFEAEAREQLAAWADGDARRLIS 216
Cdd:PRK14949 160 QKLPV--TVLSRCLQFNLKSLTQDEIGT-------QLNHILTQ-EQLPFEAEALTLLAKAANGSMRDALS 219
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
53-156 |
6.85e-08 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 55.11 E-value: 6.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 53 HSMIFwGPPGVGKTTLARLM--------ADGFDAQFIA------------ISAVLGGVK---------DiRDAVVTAqvA 103
Cdd:COG1221 132 HTLIL-GPTGVGKSFFAELMyeyaieigVLPEDAPFVVfncadyannpqlLMSQLFGYVkgaftgadkD-KEGLIEK--A 207
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1142544250 104 QGqGrrtILFVDEVHRfnksqqdafLPYvEsG---LFTF----------------------IGATTENPsfevNSALL 156
Cdd:COG1221 208 DG-G---ILFLDEVHR---------LPP-E-GqemLFTFmdkgiyrrlgetektrkanvriIFATTEDP----ESSLL 266
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
51-167 |
7.81e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 51.61 E-value: 7.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 51 RPHSMIFWGPPGVGKTTLARLMA---DGFDAQFIAISA---------------------VLGGVKDIRDAVVTAQvaqgQ 106
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALArelGPPGGGVIYIDGedileevldqllliivggkkaSGSGELRLRLALALAR----K 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1142544250 107 GRRTILFVDEVHRFNKSQQDAFL----------PYVESGLFTFIGATT-ENPSFEVNSALLSRARVYVLQSL 167
Cdd:smart00382 77 LKPDVLILDEITSLLDAEQEALLllleelrlllLLKSEKNLTVILTTNdEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
21-73 |
1.86e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 53.45 E-value: 1.86e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1142544250 21 RLRPRTLSDVVGQSHLLGPdkpLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMA 73
Cdd:PRK07764 8 RYRPATFAEVIGQEHVTEP---LSTALDSGRiNHAYLFSGPRGCGKTSSARILA 58
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
54-158 |
5.21e-07 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 48.83 E-value: 5.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 54 SMIFWGPPGVGKTTLARLMA---DGFDAQFIAISA------------VLGGVKDIRDAVVTAQVAQGQgrrtILFVDEVH 118
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAaalSNRPVFYVQLTRdtteedlfgrrnIDPGGASWVDGPLVRAAREGE----IAVLDEIN 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1142544250 119 RFNKSQQDAFLP----------------YVESGLFTFIGATTENPS--FEVNSALLSR 158
Cdd:pfam07728 77 RANPDVLNSLLSllderrlllpdggelvKAAPDGFRLIATMNPLDRglNELSPALRSR 134
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
23-145 |
6.41e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 51.80 E-value: 6.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 23 RPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMA---------DG----------------- 75
Cdd:PRK05563 11 RPQTFEDVVGQEHIT---KTLKNAIKQGKiSHAYLFSGPRGTGKTSAAKIFAkavnclnppDGepcneceickaitngsl 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 76 -----FDAqfiaisAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHR-----FNksqqdAFL-------PYVesglfT 138
Cdd:PRK05563 88 mdvieIDA------ASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMlstgaFN-----ALLktleeppAHV-----I 151
|
....*..
gi 1142544250 139 FIGATTE 145
Cdd:PRK05563 152 FILATTE 158
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
15-216 |
9.11e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 51.25 E-value: 9.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 15 YVPLAERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMADGFDAQ-------------- 79
Cdd:PRK14951 3 YLVLARKYRPRSFSEMVGQEHVV---QALTNALTQQRlHHAYLFTGTRGVGKTTVSRILAKSLNCQgpdgqggitatpcg 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 80 ----FIAI------------SAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIG 141
Cdd:PRK14951 80 vcqaCRDIdsgrfvdyteldAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEppEYLKFVL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1142544250 142 ATTEnPSfEVNSALLSRARVYVLQSLSAEELMQLVDRAVAAlnegledgQQIRFEAEAREQLAAWADGDARRLIS 216
Cdd:PRK14951 160 ATTD-PQ-KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAA--------ENVPAEPQALRLLARAARGSMRDALS 224
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
16-212 |
1.82e-06 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 49.73 E-value: 1.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 16 VPLAERLRPRTLSDVVGQSHLLGPdkpLRVAFDSGRPHSMIFWGPPGVGKTT----LAR-LMADGFDAQFIAISAVLG-G 89
Cdd:PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSR---LQVIARDGNMPNLILSGPPGTGKTTsilaLAHeLLGPNYKEAVLELNASDDrG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 90 VKDIRDAV-VTAQ--VAQGQGRRTILFVDEVHRFNKSQQDAFLPYVE--SGLFTFigATTENPSFEVNSALLSRARVYVL 164
Cdd:PLN03025 78 IDVVRNKIkMFAQkkVTLPPGRHKIVILDEADSMTSGAQQALRRTMEiySNTTRF--ALACNTSSKIIEPIQSRCAIVRF 155
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1142544250 165 QSLSAEELMQLVDRAVAAlnegledgQQIRFEAEAREQLAAWADGDAR 212
Cdd:PLN03025 156 SRLSDQEILGRLMKVVEA--------EKVPYVPEGLEAIIFTADGDMR 195
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
52-117 |
1.88e-06 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 47.67 E-value: 1.88e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1142544250 52 PHSMIFWGPPGVGKTTLARLMADGFDAQFIAIS--AVLGGV-----KDIRDAVVTAQVAQgqgrRTILFVDEV 117
Cdd:cd19503 34 PRGVLLHGPPGTGKTLLARAVANEAGANFLSISgpSIVSKYlgeseKNLREIFEEARSHA----PSIIFIDEI 102
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
19-69 |
2.45e-06 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 49.10 E-value: 2.45e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1142544250 19 AERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHsMIFWGPPGVGKTTLA 69
Cdd:PRK00440 8 VEKYRPRTLDEIVGQEEIV---ERLKSYVKEKNmPH-LLFAGPPGTGKTTAA 55
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
15-233 |
6.94e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 48.69 E-value: 6.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 15 YVPLAERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMADGFDAQFIAISAVLG----- 88
Cdd:PRK07003 3 YQVLARKWRPKDFASLVGQEHVV---RALTHALDGGRlHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGvcrac 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 89 --------------------GVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GLFTFIGATTEN 146
Cdd:PRK07003 80 reidegrfvdyvemdaasnrGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEppPHVKFILATTDP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 147 PSFEVnsALLSRARVYVLQSLSAEELMQLVDRavaALNEgledgQQIRFEAEAREQLAAWADGDARRLISAV-EVVAESA 225
Cdd:PRK07003 160 QKIPV--TVLSRCLQFNLKQMPAGHIVSHLER---ILGE-----ERIAFEPQALRLLARAAQGSMRDALSLTdQAIAYSA 229
|
....*...
gi 1142544250 226 QAAGRDSV 233
Cdd:PRK07003 230 NEVTETAV 237
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
18-204 |
9.62e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 47.72 E-value: 9.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 18 LAERLRPRTLSDVVGQSHLlgpDKPLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMAD-------------GFDAQfiAI 83
Cdd:PRK08451 4 LALKYRPKHFDELIGQESV---SKTLSLALDNNRlAHAYLFSGLRGSGKTSSARIFARalvceqgpsstpcDTCIQ--CQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 84 SAVLG--------------GVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFL-------PYVEsglftFIGA 142
Cdd:PRK08451 79 SALENrhidiiemdaasnrGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLktleeppSYVK-----FILA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1142544250 143 TTEnpSFEVNSALLSRARVYVLQSLSAEELmqlvdraVAALNEGLEDgQQIRFEAEAREQLA 204
Cdd:PRK08451 154 TTD--PLKLPATILSRTQHFRFKQIPQNSI-------ISHLKTILEK-EGVSYEPEALEILA 205
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
15-145 |
1.30e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 47.63 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 15 YVPLAERLRPRTLSDVVGQSHLLGPdkpLRVAFDSGR-PHSMIFWGPPGVGKTTLARLMADG------------------ 75
Cdd:PRK14954 3 YQVIARKYRPSKFADITAQEHITHT---IQNSLRMDRvGHGYIFSGLRGVGKTTAARVFAKAvncqrmiddpvylqevte 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 76 ----------FDA-------QFIAISAvlGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVES--GL 136
Cdd:PRK14954 80 pcgecescrdFDAgtslnisEFDAASN--NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEppPH 157
|
....*....
gi 1142544250 137 FTFIGATTE 145
Cdd:PRK14954 158 AIFIFATTE 166
|
|
| RecA-like_CDC48_r2-like |
cd19511 |
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ... |
51-117 |
1.75e-05 |
|
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410919 [Multi-domain] Cd Length: 159 Bit Score: 44.97 E-value: 1.75e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1142544250 51 RPHSMIFWGPPGVGKTTLARLMADGFDAQFIAISA-------VLGGVKDIRDAVVTAQvaqgQGRRTILFVDEV 117
Cdd:cd19511 26 PPKGVLLYGPPGCGKTLLAKALASEAGLNFISVKGpelfskyVGESERAVREIFQKAR----QAAPCIIFFDEI 95
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
17-75 |
1.84e-05 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 47.14 E-value: 1.84e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1142544250 17 PLAERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGR-PHsMIFWGPPGVGK--TTLARLMADG 75
Cdd:PRK04132 8 PWVEKYRPQRLDDIVGQEHIV---KRLKHYVKTGSmPH-LLFAGPPGVGKclTGDTKVIANG 65
|
|
| RecA-like_Lon |
cd19500 |
lon protease homolog 2 peroxisomal; Lon protease (also known as Lon peptidase) is an ... |
55-92 |
2.01e-05 |
|
lon protease homolog 2 peroxisomal; Lon protease (also known as Lon peptidase) is an evolutionarily conserved ATP-dependent serine protease, present in bacteria and eukaryotic mitochondria and peroxisomes, which mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Lon protease is both an ATP-dependent peptidase and a protein-activated ATPase. This RecA-like Lon domain subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410908 [Multi-domain] Cd Length: 182 Bit Score: 44.86 E-value: 2.01e-05
10 20 30
....*....|....*....|....*....|....*...
gi 1142544250 55 MIFWGPPGVGKTTLARLMADGFDAQFIAISavLGGVKD 92
Cdd:cd19500 40 LCLVGPPGVGKTSLGKSIARALGRKFVRIS--LGGVRD 75
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
46-161 |
3.65e-05 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 43.81 E-value: 3.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 46 AFDSGRPHSMIFWGPPGVGKTTLARLMADGFDAQFIAISA-------VLGGVKDIRDavvTAQVAqGQGRRTILFVDEVH 118
Cdd:cd19481 20 RYGLGLPKGILLYGPPGTGKTLLAKALAGELGLPLIVVKLssllskyVGESEKNLRK---IFERA-RRLAPCILFIDEID 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 119 RFNKSQQD------------AFL-----PYVESGLFTFigATTENPSfEVNSALLSRARV 161
Cdd:cd19481 96 AIGRKRDSsgesgelrrvlnQLLteldgVNSRSKVLVI--AATNRPD-LLDPALLRPGRF 152
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
54-120 |
4.66e-05 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 43.10 E-value: 4.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 54 SMIFWGPPGVGKTTLARLMADGFDAQ---FIAISA-VLGGVKDIRDAVVTA-------------------QVAQGQGRRT 110
Cdd:pfam13401 7 ILVLTGESGTGKTTLLRRLLEQLPEVrdsVVFVDLpSGTSPKDLLRALLRAlglplsgrlskeellaalqQLLLALAVAV 86
|
90
....*....|
gi 1142544250 111 ILFVDEVHRF 120
Cdd:pfam13401 87 VLIIDEAQHL 96
|
|
| RecA-like_NVL_r1-like |
cd19518 |
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
52-117 |
6.20e-05 |
|
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410926 [Multi-domain] Cd Length: 169 Bit Score: 43.55 E-value: 6.20e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1142544250 52 PHSMIFWGPPGVGKTTLARLMADGFDAQFIAISA--VLGGV-----KDIRDAVVTAQvaqgQGRRTILFVDEV 117
Cdd:cd19518 34 PRGVLLHGPPGCGKTMLANAIAGELKVPFLKISAteIVSGVsgeseEKIRELFDQAI----SNAPCIVFIDEI 102
|
|
| Lon |
COG0466 |
ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, ... |
59-94 |
1.24e-04 |
|
ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440234 [Multi-domain] Cd Length: 785 Bit Score: 44.62 E-value: 1.24e-04
10 20 30
....*....|....*....|....*....|....*....
gi 1142544250 59 GPPGVGKTTLARLMADGFDAQFIAISavLGGVKD---IR 94
Cdd:COG0466 359 GPPGVGKTSLGKSIARALGRKFVRIS--LGGVRDeaeIR 395
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
52-256 |
1.28e-04 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 43.33 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 52 PHSMIFWGPPGVGKTTLARLMADGFDAQFI------AISAVLG-GVKDIRDavVTAQVAQgqgRRTILFVDEVHRFNKS- 123
Cdd:COG1223 35 PRKILFYGPPGTGKTMLAEALAGELKLPLLtvrldsLIGSYLGeTARNLRK--LFDFARR---APCVIFFDEFDAIAKDr 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 124 --QQD---------AFLPYVE---SGLFTFigATTENPSFeVNSALLSR-ARVYVLQSLSAEELMQLVDRAVAALnegle 188
Cdd:COG1223 110 gdQNDvgevkrvvnALLQELDglpSGSVVI--AATNHPEL-LDSALWRRfDEVIEFPLPDKEERKEILELNLKKF----- 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1142544250 189 dgqQIRFEAEAREQLAAWADGDARRLISAVEVVAESAQAAGRDSVDAAWLETSLSQNLRRFDKGGDAF 256
Cdd:COG1223 182 ---PLPFELDLKKLAKKLEGLSGADIEKVLKTALKKAILEDREKVTKEDLEEALKQRKERKKEPKKEG 246
|
|
| RecA-like_PAN_like |
cd19502 |
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ... |
36-117 |
1.92e-04 |
|
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410910 [Multi-domain] Cd Length: 171 Bit Score: 41.94 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 36 LLGPDKPLRVAFDSgrPHSMIFWGPPGVGKTTLARLMADGFDAQFIAISA------VLG-GVKDIRDAVVTAQvaqgQGR 108
Cdd:cd19502 23 LKHPELFEELGIEP--PKGVLLYGPPGTGKTLLAKAVANHTDATFIRVVGselvqkYIGeGARLVRELFEMAR----EKA 96
|
....*....
gi 1142544250 109 RTILFVDEV 117
Cdd:cd19502 97 PSIIFIDEI 105
|
|
| RecA-like_ATAD1 |
cd19520 |
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ... |
42-125 |
2.37e-04 |
|
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase) is an ATPase that plays a critical role in regulating the surface expression of alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors, thereby regulating synaptic plasticity, learning and memory. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410928 [Multi-domain] Cd Length: 166 Bit Score: 41.64 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 42 PLRVA--FDSGR----PHSMIFWGPPGVGKTTLARLMADGFDAQFIAISAVL------GGVKDIRDAVVT-AQVAQgqgr 108
Cdd:cd19520 19 PLQRPelFDNSRllqpPKGVLLYGPPGCGKTMLAKATAKEAGARFINLQVSSltdkwyGESQKLVAAVFSlASKLQ---- 94
|
90
....*....|....*..
gi 1142544250 109 RTILFVDEVHRFNKSQQ 125
Cdd:cd19520 95 PSIIFIDEIDSFLRQRS 111
|
|
| RecA-like_Figl-1 |
cd19525 |
ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; ... |
50-127 |
2.48e-04 |
|
ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; it may be involved in DNA double-strand break repair via homologous recombination. Caenorhabditis elegans FIGL-1 is a nuclear protein and controls the mitotic progression in the germ line and mouse FIGL-1 may be involved in the control of male meiosis. human FIGL-1 has been shown to be a centrosome protein involved in ciliogenesis perhaps as a microtubule-severing protein. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410933 [Multi-domain] Cd Length: 186 Bit Score: 41.90 E-value: 2.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 50 GRPHSMIFWGPPGVGKTTLARLMADGFDAQFIAISA-------VLGGVKDIRDAVVTAQVAQgqgrRTILFVDEVHRFNK 122
Cdd:cd19525 53 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISAssltskwVGEGEKMVRALFSVARCKQ----PAVIFIDEIDSLLS 128
|
....*
gi 1142544250 123 SQQDA 127
Cdd:cd19525 129 QRGEG 133
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
27-70 |
2.50e-04 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 426032 [Multi-domain] Cd Length: 207 Bit Score: 42.14 E-value: 2.50e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 1142544250 27 LSDVVGQSHllgPDKPLRVAFDSGrpHSMIFWGPPGVGKTTLAR 70
Cdd:pfam01078 2 LADVKGQEQ---AKRALEIAAAGG--HNLLMIGPPGSGKTMLAK 40
|
|
| RecA-like_VCP_r2 |
cd19529 |
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ... |
52-117 |
2.65e-04 |
|
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ATPase domains; The Valosin-containing protein-like ATPase of Thermoplasma acidophilum (VAT), is an archaeal homolog of the ubiquitous Cdc48/p97. It is a protein unfoldase that functions in concert with the 20S proteasome by unfolding proteasome substrates and passing them on for degradation. VAT forms a homohexamer, each monomer contains two tandem ATPase domains, referred to as D1 and D2, and an N-terminal domain. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410937 [Multi-domain] Cd Length: 159 Bit Score: 41.33 E-value: 2.65e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1142544250 52 PHSMIFWGPPGVGKTTLARLMADGFDAQFIAISA-------VLGGVKDIRDAVVTA-QVAQgqgrrTILFVDEV 117
Cdd:cd19529 27 PKGILLYGPPGTGKTLLAKAVATESNANFISVKGpellskwVGESEKAIREIFRKArQVAP-----CVIFFDEI 95
|
|
| RecA-like_CDC48_r2-like |
cd19528 |
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or ... |
25-124 |
3.48e-04 |
|
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP in metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the second of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r2-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410936 [Multi-domain] Cd Length: 161 Bit Score: 40.96 E-value: 3.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 25 RTLSDVVgQSHLLGPDKPLRvaFDSGRPHSMIFWGPPGVGKTTLARLMADGFDAQFIAI------SAVLGGVK-DIRDAV 97
Cdd:cd19528 3 RELQELV-QYPVEHPDKFLK--FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISVkgpellTMWFGESEaNVRDIF 79
|
90 100
....*....|....*....|....*..
gi 1142544250 98 VTAQVAQgqgrRTILFVDEVHRFNKSQ 124
Cdd:cd19528 80 DKARAAA----PCVLFFDELDSIAKAR 102
|
|
| RecA-like_VPS4-like |
cd19509 |
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This ... |
52-85 |
6.97e-04 |
|
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This subfamily includes the ATPase domains of vacuolar protein sorting-associated protein 4 (VPS4), ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase), Katanin p60 ATPase-containing subunit A1 (KTNA1), Spastin, and Fidgetin-Like 1 (FIGL-1). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410917 [Multi-domain] Cd Length: 163 Bit Score: 40.03 E-value: 6.97e-04
10 20 30
....*....|....*....|....*....|....
gi 1142544250 52 PHSMIFWGPPGVGKTTLARLMADGFDAQFIAISA 85
Cdd:cd19509 32 PRGILLYGPPGTGKTLLARAVASESGSTFFSISA 65
|
|
| RecA-like_FtsH |
cd19501 |
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ... |
52-117 |
8.44e-04 |
|
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410909 [Multi-domain] Cd Length: 171 Bit Score: 39.91 E-value: 8.44e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1142544250 52 PHSMIFWGPPGVGKTTLARLMADGFDAQFIAISA-----VLGGV--KDIRDAVVTAQvaqgQGRRTILFVDEV 117
Cdd:cd19501 37 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGsdfveMFVGVgaSRVRDLFEQAK----KNAPCIVFIDEI 105
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
19-83 |
1.62e-03 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 40.15 E-value: 1.62e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1142544250 19 AERLRPRTLSDVVGQSHLLgpdKPLRVAFDSGRPhsMIFWGPPGVGKTTLARLMADGFDAQFIAI 83
Cdd:COG0714 3 EARLRAEIGKVYVGQEELI---ELVLIALLAGGH--LLLEGVPGVGKTTLAKALARALGLPFIRI 62
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
52-116 |
2.21e-03 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 39.99 E-value: 2.21e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1142544250 52 PHSMIFWGPPGVGKTTLARLMADGFDAQFIAI--SAVLG-----GVKDIRDAVVTAQvaqgQGRRTILFVDE 116
Cdd:COG1222 112 PKGVLLYGPPGTGKTLLAKAVAGELGAPFIRVrgSELVSkyigeGARNVREVFELAR----EKAPSIIFIDE 179
|
|
| SpoIIIAA |
COG3854 |
Stage III sporulation protein SpoIIIAA [Cell cycle control, cell division, chromosome ... |
48-76 |
4.04e-03 |
|
Stage III sporulation protein SpoIIIAA [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443063 Cd Length: 309 Bit Score: 38.98 E-value: 4.04e-03
10 20 30
....*....|....*....|....*....|...
gi 1142544250 48 DSGRPHSMIFWGPPGVGKTTL----ARLMADGF 76
Cdd:COG3854 136 SGGRIYNTLIISPPGCGKTTLlrdiARVLSDGL 168
|
|
| CMPK |
cd02020 |
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine ... |
59-112 |
6.93e-03 |
|
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Pssm-ID: 238978 [Multi-domain] Cd Length: 147 Bit Score: 37.08 E-value: 6.93e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1142544250 59 GPPGVGKTTLARLMADGFDAQFI------------AISAVlGGVKDIRDAVVTAQVAQGQGRRTIL 112
Cdd:cd02020 6 GPAGSGKSTVAKLLAKKLGLPYLdtggirteevgkLASEV-AAIPEVRKALDERQRELAKKPGIVL 70
|
|
| ftsH |
CHL00176 |
cell division protein; Validated |
52-117 |
8.31e-03 |
|
cell division protein; Validated
Pssm-ID: 214386 [Multi-domain] Cd Length: 638 Bit Score: 38.49 E-value: 8.31e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1142544250 52 PHSMIFWGPPGVGKTTLARLMADGFDAQFIAISA-------VLGGVKDIRDAVVTAQvaqgQGRRTILFVDEV 117
Cdd:CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGsefvemfVGVGAARVRDLFKKAK----ENSPCIVFIDEI 284
|
|
| T7SS_EccA |
TIGR03922 |
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the ... |
50-217 |
8.68e-03 |
|
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 188437 [Multi-domain] Cd Length: 557 Bit Score: 38.29 E-value: 8.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 50 GRPHSMIFWGPPGVGKTTLARLMAD-------------------GFDAQFIAISAV---------LGGVKDIRDAVVTAQ 101
Cdd:TIGR03922 310 QTSNHMLFAGPPGTGKTTIARVVAKiycglgvlrkplvrevsraDLIGQYIGESEAktneiidsaLGGVLFLDEAYTLVE 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1142544250 102 VAQGQGR-------RTILFVDEVHRFNksqqdaflpyvesglFTFIGATTENPS---FEVNSALLSR-ARVYVLQSLSAE 170
Cdd:TIGR03922 390 TGYGQKDpfgleaiDTLLARMENDRDR---------------LVVIGAGYRKDLdkfLEVNEGLRSRfTRVIEFPSYSPD 454
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1142544250 171 ELMQLVDRAVAALNEGLEDGQQIRFEAEA---REQLAAWADGDARRLISA 217
Cdd:TIGR03922 455 ELVEIARRMATERDSVLDDAAADALLEAAttlAQDTTPDANGDLRRGLDI 504
|
|
| |
