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Conserved domains on  [gi|1041501633|gb|ANO43582|]
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cytochrome b, partial (mitochondrion) [Crocidura aff. suaveolens]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-357 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 557.71  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   1 SFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFL 80
Cdd:MTH00100   17 SFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  81 HVGRGLYYGSYMYLETWNIGVLL********************************************************* 160
Cdd:MTH00100   97 HVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLT 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 161 **FAFHFILPFI*AALAGVHLLFLHE*GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDMLGDPDNY 240
Cdd:MTH00100  177 RFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNY 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 241 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLLTLT 320
Cdd:MTH00100  257 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLT 336

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1041501633 321 WIGGQPVEYPFVVIGQLASVIYFLIILFIMPITSMIE 357
Cdd:MTH00100  337 WIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIE 373
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-357 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 557.71  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   1 SFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFL 80
Cdd:MTH00100   17 SFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  81 HVGRGLYYGSYMYLETWNIGVLL********************************************************* 160
Cdd:MTH00100   97 HVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLT 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 161 **FAFHFILPFI*AALAGVHLLFLHE*GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDMLGDPDNY 240
Cdd:MTH00100  177 RFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNY 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 241 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLLTLT 320
Cdd:MTH00100  257 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLT 336

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1041501633 321 WIGGQPVEYPFVVIGQLASVIYFLIILFIMPITSMIE 357
Cdd:MTH00100  337 WIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIE 373
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-357 4.94e-71

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 226.60  E-value: 4.94e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   2 FIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 81
Cdd:COG1290    27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  82 VGRGLYYGSYMY---LeTWNIGVLL******************************************************* 158
Cdd:COG1290   107 MFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDAT 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 159 ****FAFH-FILPFI*AALAGVHLLFLHE*GSNNPSG----LNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDm 233
Cdd:COG1290   186 LNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI- 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 234 lGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWI 311
Cdd:COG1290   265 -NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVA 343

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1041501633 312 LVADLLTLTWIGGQPVEYpfVVIGQLASVIYFLIILFIMPITSMIE 357
Cdd:COG1290   344 FIVFFIVLTILGANPPIA--TLLGSINTVTYFAFFLIVLPILAFIE 387
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 191-338 1.89e-49

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 162.82  E-value: 1.89e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 191 NPSGLNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDMLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPN 270
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1041501633 271 KLGGVLALVLSILILMIIPLLHTAKQRSmMFRPMSQCMFWILVADLLTLTWIGGQPVEYPFVVIGQLA 338
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-188 2.73e-42

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 145.60  E-value: 2.73e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   2 FIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 81
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  82 VGRGLYYG--SYMYLETWNIGVLL******************************************************** 159
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1041501633 160 ***FAFHFILPFI*AALAGVHLLFLHE*G 188
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 213-277 4.35e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.11  E-value: 4.35e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1041501633 213 ILGALIMIFMLSSLvlfSPDMLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 277
Cdd:TIGR01156  44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLL 100
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-357 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 557.71  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   1 SFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFL 80
Cdd:MTH00100   17 SFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  81 HVGRGLYYGSYMYLETWNIGVLL********************************************************* 160
Cdd:MTH00100   97 HVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLT 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 161 **FAFHFILPFI*AALAGVHLLFLHE*GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDMLGDPDNY 240
Cdd:MTH00100  177 RFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNY 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 241 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLLTLT 320
Cdd:MTH00100  257 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLT 336

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1041501633 321 WIGGQPVEYPFVVIGQLASVIYFLIILFIMPITSMIE 357
Cdd:MTH00100  337 WIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIE 373
CYTB MTH00119
cytochrome b; Provisional
 1-357 3.83e-174

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 489.03  E-value: 3.83e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   1 SFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFL 80
Cdd:MTH00119   18 SLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  81 HVGRGLYYGSYMYLETWNIGVLL********************************************************* 160
Cdd:MTH00119   98 HIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLT 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 161 **FAFHFILPFI*AALAGVHLLFLHE*GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDMLGDPDNY 240
Cdd:MTH00119  178 RFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENF 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 241 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLLTLT 320
Cdd:MTH00119  258 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILT 337

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1041501633 321 WIGGQPVEYPFVVIGQLASVIYFLIILFIMPITSMIE 357
Cdd:MTH00119  338 WIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALE 374
CYTB MTH00131
cytochrome b; Provisional
 1-357 5.49e-173

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 486.08  E-value: 5.49e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   1 SFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFL 80
Cdd:MTH00131   17 ALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  81 HVGRGLYYGSYMYLETWNIGVLL********************************************************* 160
Cdd:MTH00131   97 HIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLT 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 161 **FAFHFILPFI*AALAGVHLLFLHE*GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDMLGDPDNY 240
Cdd:MTH00131  177 RFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNF 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 241 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLLTLT 320
Cdd:MTH00131  257 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILT 336

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1041501633 321 WIGGQPVEYPFVVIGQLASVIYFLIILFIMPITSMIE 357
Cdd:MTH00131  337 WIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLE 373
CYTB MTH00074
cytochrome b; Provisional
 1-357 7.27e-168

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 473.01  E-value: 7.27e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   1 SFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFL 80
Cdd:MTH00074   18 SFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  81 HVGRGLYYGSYMYLETWNIGVLL********************************************************* 160
Cdd:MTH00074   98 HIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLT 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 161 **FAFHFILPFI*AALAGVHLLFLHE*GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDMLGDPDNY 240
Cdd:MTH00074  178 RFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNF 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 241 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLLTLT 320
Cdd:MTH00074  258 TPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILT 337

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1041501633 321 WIGGQPVEYPFVVIGQLASVIYFLIILFIMPITSMIE 357
Cdd:MTH00074  338 WIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLE 374
CYTB MTH00191
cytochrome b; Provisional
 1-352 6.49e-160

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 452.06  E-value: 6.49e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   1 SFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFL 80
Cdd:MTH00191   14 SLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYL 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  81 HVGRGLYYGSYMYLETWNIGVLL********************************************************* 160
Cdd:MTH00191   94 HIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLT 173

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 161 **FAFHFILPFI*AALAGVHLLFLHE*GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDMLGDPDNY 240
Cdd:MTH00191  174 RFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENF 253

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 241 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLLTLT 320
Cdd:MTH00191  254 IPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLT 333

                         330       340       350
                  ....*....|....*....|....*....|..
gi 1041501633 321 WIGGQPVEYPFVVIGQLASVIYFLIILFIMPI 352
Cdd:MTH00191  334 WLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00034
cytochrome b; Validated
 1-357 9.47e-151

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 429.51  E-value: 9.47e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   1 SFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFL 80
Cdd:MTH00034   17 SLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYF 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  81 HVGRGLYYGSYMYLETWNIGVLL********************************************************* 160
Cdd:MTH00034   97 HIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLT 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 161 **FAFHFILPFI*AALAGVHLLFLHE*GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDMLGDPDNY 240
Cdd:MTH00034  177 RFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENF 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 241 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLLTLT 320
Cdd:MTH00034  257 IPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILT 336

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1041501633 321 WIGGQPVEYPFVVIGQLASVIYFLIILFIMPITSMIE 357
Cdd:MTH00034  337 WIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLE 373
CYTB MTH00156
cytochrome b; Provisional
 1-350 1.30e-143

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 410.71  E-value: 1.30e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   1 SFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFL 80
Cdd:MTH00156    7 SLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  81 HVGRGLYYGSYMYLETWNIGVLL********************************************************* 160
Cdd:MTH00156   87 HIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLT 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 161 **FAFHFILPFI*AALAGVHLLFLHE*GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDMLGDPDNY 240
Cdd:MTH00156  167 RFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENF 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 241 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLLTLT 320
Cdd:MTH00156  247 IPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLT 326

                         330       340       350
                  ....*....|....*....|....*....|
gi 1041501633 321 WIGGQPVEYPFVVIGQLASVIYFLIILFIM 350
Cdd:MTH00156  327 WIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-357 7.13e-143

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 409.68  E-value: 7.13e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   1 SFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFL 80
Cdd:MTH00145   18 SLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  81 HVGRGLYYGSYMYLETWNIGVLL********************************************************* 160
Cdd:MTH00145   98 HIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLK 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 161 **FAFHFILPFI*AALAGVHLLFLHE*GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDMLGDPDNY 240
Cdd:MTH00145  178 RFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENF 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 241 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLLTLT 320
Cdd:MTH00145  258 IPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILT 337

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 1041501633 321 WIGGQPVEYPFVVIGQLASVIYFLIILfIMPITSMIE 357
Cdd:MTH00145  338 WIGACPVEEPYETIGQVFTVLYFLFFL-ILPLVQKLW 373
CYTB MTH00016
cytochrome b; Validated
 1-356 1.08e-137

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 396.36  E-value: 1.08e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   1 SFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFL 80
Cdd:MTH00016   18 SLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  81 HVGRGLYYGSYMYLETWNIGVLL********************************************************* 160
Cdd:MTH00016   98 HIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLT 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 161 **FAFHFILPFI*AALAGVHLLFLHE*GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDMLGDPDNY 240
Cdd:MTH00016  178 RFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENF 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 241 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLLTLT 320
Cdd:MTH00016  258 IPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLT 337

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1041501633 321 WIGGQPVEYPFVVIGQLASVIYFlIILFIMPITSMI 356
Cdd:MTH00016  338 WIGGRPVEPPYEFLGQIFTVFYF-FYFMINPLLMKL 372
CYTB MTH00053
cytochrome b; Provisional
 2-357 4.50e-125

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 364.41  E-value: 4.50e-125
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   2 FIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 81
Cdd:MTH00053   19 FIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFH 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  82 VGRGLYYGSYMYLETWNIGVLL********************************************************** 161
Cdd:MTH00053   99 IGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNR 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 162 *FAFHFILPFI*AALAGVHLLFLHE*GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDMLGDPDNYT 241
Cdd:MTH00053  179 FYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFK 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 242 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLLTLTW 321
Cdd:MTH00053  259 QANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTW 338

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1041501633 322 IGGQPVEYPFVVIGQLASVIYFLIILFIMPITSMIE 357
Cdd:MTH00053  339 IGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLE 374
CYTB MTH00224
cytochrome b; Provisional
 1-354 1.18e-121

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 355.77  E-value: 1.18e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   1 SFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFL 80
Cdd:MTH00224   18 SLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  81 HVGRGLYYGSYMYLETWNIGVLL********************************************************* 160
Cdd:MTH00224   98 HVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLN 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 161 **FAFHFILPFI*AALAGVHLLFLHE*GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDMLGDPDNY 240
Cdd:MTH00224  178 RFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENF 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 241 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLLTLT 320
Cdd:MTH00224  258 LMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILT 337

                         330       340       350
                  ....*....|....*....|....*....|....
gi 1041501633 321 WIGGQPVEYPFVVIGQLASVIYFliILFIMPITS 354
Cdd:MTH00224  338 WIGGRPVEDPFEGIGQVFTILYF--SYFIISPAI 369
CYTB MTH00022
cytochrome b; Validated
 3-357 2.73e-121

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 354.78  E-value: 2.73e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   3 IDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHV 82
Cdd:MTH00022   18 VDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHI 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  83 GRGLYYGSYMYLETWNIGVLL*********************************************************** 162
Cdd:MTH00022   98 GRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRF 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 163 FAFHFILPFI*AALAGVHLLFLHE*GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDMLGDPDNYTP 242
Cdd:MTH00022  178 FSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQ 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 243 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLLTLTWI 322
Cdd:MTH00022  258 ANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWI 337

                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1041501633 323 GGQPVEYPFVVIGQLASVIYFLIILFIMPITSMIE 357
Cdd:MTH00022  338 GSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELE 372
CYTB MTH00033
cytochrome b; Provisional
 3-352 3.29e-91

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 278.36  E-value: 3.29e-91
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   3 IDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHV 82
Cdd:MTH00033   16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  83 GRGLYYGSYMYLETWNIGVLL*********************************************************** 162
Cdd:MTH00033   96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 163 FAFHFILPFI*AALAGVHLLFLHE*GSNNPSGLNSDTDKIPFHPYYTIKDILGALIM--IFMLSSLVLFSPDMLGDPDNY 240
Cdd:MTH00033  176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILfgVFVIIGIEPRIETLLQDPENF 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 241 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLLTLT 320
Cdd:MTH00033  256 IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILT 335

                         330       340       350
                  ....*....|....*....|....*....|...
gi 1041501633 321 WIGGQPV-EYPFVVIGQLASVIYFLIILFIMPI 352
Cdd:MTH00033  336 WIGSAPAgADPYVLIGRIATIFYFGYFLVLVPL 368
CYTB MTH00086
cytochrome b; Provisional
 3-350 2.00e-71

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 226.36  E-value: 2.00e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   3 IDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHV 82
Cdd:MTH00086    8 VTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHI 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  83 GRGLYYGSYMYLETWNIGVLL*********************************************************** 162
Cdd:MTH00086   88 FKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFF 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 163 FAFHFILPFI*AALAGVHLLFLHE*GSNNPSGLNSDTDKIPFHPYYTIKDILGaLIMIFMLSSLVLFSPDMLGDPDNYTP 242
Cdd:MTH00086  168 FVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPEMFIE 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 243 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIIPLLhtaKQRSMMFRPMSQCMFWILVADLLTLTWI 322
Cdd:MTH00086  247 ADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVVNVILSWL 323

                         330       340
                  ....*....|....*....|....*...
gi 1041501633 323 GGQPVEYPFVVIGQLASVIYFLIILFIM 350
Cdd:MTH00086  324 GQCLVEYPFLFLSQIFSFIYFFLILLML 351
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-357 4.94e-71

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 226.60  E-value: 4.94e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   2 FIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 81
Cdd:COG1290    27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  82 VGRGLYYGSYMY---LeTWNIGVLL******************************************************* 158
Cdd:COG1290   107 MFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDAT 185

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 159 ****FAFH-FILPFI*AALAGVHLLFLHE*GSNNPSG----LNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDm 233
Cdd:COG1290   186 LNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI- 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 234 lGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWI 311
Cdd:COG1290   265 -NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVA 343

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1041501633 312 LVADLLTLTWIGGQPVEYpfVVIGQLASVIYFLIILFIMPITSMIE 357
Cdd:COG1290   344 FIVFFIVLTILGANPPIA--TLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00046
cytochrome b; Validated
 3-349 3.06e-53

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 179.41  E-value: 3.06e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   3 IDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHV 82
Cdd:MTH00046   10 IDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHM 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  83 GRGLYYGSYMYLETWNIGVLL*********************************************************** 162
Cdd:MTH00046   90 GRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRV 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 163 FAFHFILPFI*AALAGVHLLFLHE*GSNNP-SGLNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDMLGDPDNYT 241
Cdd:MTH00046  170 FSVHICLGFVILGLMVVHLFYLHKSGSSNPlFSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYL 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 242 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIipllhTAKQRSMMFRPMSQCMFWILVADLLTLTW 321
Cdd:MTH00046  250 EADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFFLWV-----PTFNGSSVYSVWRQVNFWLIVSLFFSLSY 324

                         330       340
                  ....*....|....*....|....*...
gi 1041501633 322 IGGQPVEYPFVVIGQLASVIyFLIILFI 349
Cdd:MTH00046  325 LGGCHPEYPYLLISQLFSVL-MVLLLFI 351
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 191-338 1.89e-49

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 162.82  E-value: 1.89e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 191 NPSGLNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDMLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPN 270
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1041501633 271 KLGGVLALVLSILILMIIPLLHTAKQRSmMFRPMSQCMFWILVADLLTLTWIGGQPVEYPFVVIGQLA 338
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-190 4.66e-46

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 155.99  E-value: 4.66e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   1 SFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFL 80
Cdd:cd00284     9 SLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  81 HVGRGLYYGSYM--YLETWNIGVLL******************************************************* 158
Cdd:cd00284    89 HIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNAT 168

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1041501633 159 ****FAFHFILPFI*AALAGVHLLFLHE*GSN 190
Cdd:cd00284   169 LTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
2-188 2.73e-42

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 145.60  E-value: 2.73e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   2 FIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 81
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  82 VGRGLYYG--SYMYLETWNIGVLL******************************************************** 159
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 1041501633 160 ***FAFHFILPFI*AALAGVHLLFLHE*G 188
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
242-342 9.38e-39

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 133.37  E-value: 9.38e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633 242 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALVLSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLLTLTW 321
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 1041501633 322 IGGQPVEYPFVVIGQLASVIY 342
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 17-103 7.74e-16

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 75.52  E-value: 7.74e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633  17 FGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLE- 95
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123


                  ....*....
gi 1041501633  96 -TWNIGVLL 103
Cdd:PRK03735  124 lNWVVGVLI 132
petB CHL00070
cytochrome b6
 8-103 1.77e-11

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 62.82  E-value: 1.77e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1041501633   8 PSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLY 87
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90
                  ....*....|....*...
gi 1041501633  88 YGSYMYLE--TWNIGVLL 103
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVL 124
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
163-237 2.36e-11

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 61.49  E-value: 2.36e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1041501633 163 FAFHF-ILPFI*AALAGVHLLFLHE*GSNNPSGLNSDTDKIPFHPYYTIKDILGALIMIFMLSSLVLFSPDMLGDP 237
Cdd:pfam13631  94 YALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQINPIWLGGP 169
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 213-277 8.55e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 57.11  E-value: 8.55e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1041501633 213 ILGAlimIFMLSSLVLFSPDMLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 277
Cdd:COG5679    45 ILGT---IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVM 101
petD CHL00058
cytochrome b6/f complex subunit IV
 213-277 1.58e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 56.16  E-value: 1.58e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1041501633 213 ILGALIMIFMLSSLvlfSPDMLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 277
Cdd:CHL00058   44 ILGTIACNVGLAVL---EPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLL 100
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 213-277 4.35e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.11  E-value: 4.35e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1041501633 213 ILGALIMIFMLSSLvlfSPDMLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLA 277
Cdd:TIGR01156  44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLL 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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