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Conserved domains on  [gi|1039021930|gb|ANM70889|]
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RING/U-box superfamily protein [Arabidopsis thaliana]

Protein Classification

glycine zipper family protein( domain architecture ID 10601774)

uncharacterized glycine zipper family protein similar to Escherichia coli YmgG containing an OmpA-like membrane domain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gly-zipper_YMGG pfam13441
YMGG-like Gly-zipper;
41-76 9.28e-06

YMGG-like Gly-zipper;


:

Pssm-ID: 463878 [Multi-domain]  Cd Length: 45  Bit Score: 41.33  E-value: 9.28e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1039021930  41 ALVGTLLGALTGALIGqetesGFIRGAAVGAISGAV 76
Cdd:pfam13441   7 AAIGAAAGAAIGAAVG-----GGGKGAAIGAAAGAL 37
 
Name Accession Description Interval E-value
Gly-zipper_YMGG pfam13441
YMGG-like Gly-zipper;
41-76 9.28e-06

YMGG-like Gly-zipper;


Pssm-ID: 463878 [Multi-domain]  Cd Length: 45  Bit Score: 41.33  E-value: 9.28e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1039021930  41 ALVGTLLGALTGALIGqetesGFIRGAAVGAISGAV 76
Cdd:pfam13441   7 AAIGAAAGAAIGAAVG-----GGGKGAAIGAAAGAL 37
 
Name Accession Description Interval E-value
Gly-zipper_YMGG pfam13441
YMGG-like Gly-zipper;
41-76 9.28e-06

YMGG-like Gly-zipper;


Pssm-ID: 463878 [Multi-domain]  Cd Length: 45  Bit Score: 41.33  E-value: 9.28e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1039021930  41 ALVGTLLGALTGALIGqetesGFIRGAAVGAISGAV 76
Cdd:pfam13441   7 AAIGAAAGAAIGAAVG-----GGGKGAAIGAAAGAL 37
Gly-zipper_OmpA pfam13436
Glycine-zipper domain;
41-77 5.26e-04

Glycine-zipper domain;


Pssm-ID: 433205  Cd Length: 44  Bit Score: 36.53  E-value: 5.26e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1039021930  41 ALVGTLLGALTGALIGQETESGFiRGAAVGAISGAVF 77
Cdd:pfam13436   4 AAVGAAIGAAAGAAGGAILGDAG-TGAAIGAASGLLA 39
Gly-zipper_Omp pfam13488
Glycine zipper;
43-76 2.76e-03

Glycine zipper;


Pssm-ID: 463894 [Multi-domain]  Cd Length: 46  Bit Score: 34.80  E-value: 2.76e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1039021930  43 VGTLLGALTGALIGQETeSGFIRGAAVGAISGAV 76
Cdd:pfam13488   1 IGAAAGAAAGAAVGSAV-GGAGVGALIGAAVGAL 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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