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Conserved domains on  [gi|1039019063|gb|ANM68245|]
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HEAT repeat-containing protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Symplekin_C pfam12295
Symplekin tight junction protein C terminal; This domain family is found in eukaryotes, and is ...
 1032-1195 1.43e-69

Symplekin tight junction protein C terminal; This domain family is found in eukaryotes, and is approximately 180 amino acids in length. There is a single completely conserved residue P that may be functionally important. Symplekn has been localized, by light and electron microscopy, to the plaque associated with the cytoplasmic face of the tight junction-containing zone (zonula occludens) of polar epithelial cells and of Sertoli cells of testis. However, both the mRNA and the protein can also be detected in a wide range of cell types that do not form tight junctions. Careful analyses have revealed that the protein occurs in all these diverse cells in the nucleoplasm, and only in those cells forming tight junctions is it recruited, partly but specifically, to the plaque structure of the zonula occludens.


:

Pssm-ID: 463523  Cd Length: 185  Bit Score: 231.35  E-value: 1.43e-69
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063 1032 DVEILFPILPFLPRDDVLRIFPHMVNLPMEKFQVALSRVLQGSSQS-----GPVLSPSEALIAIHSIDPARDGIPLKQVT 1106
Cdd:pfam12295    1 DVRFLIPILGGLEKDEVIALLPRLIKLPPEVVKEVFNRLLQAPPSRvnqteGSPLTPVELLVALHNIDPKDDGVPLKRIV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063 1107 DACNTCFAQRQTFTQQVLAGVLNQLVQQIPLPMLFMRTVLQAIGAFPALSDFILEILSRLVSKQIWKYPKLWVGFLKCTQ 1186
Cdd:pfam12295   81 DALDLCFSMTDVFTQEVLAAALQQIVEQPPLPLLFMRTVIQALQKYPSLRSFVANILPRLIQKQVWKNKKLWEGFIKCAK 160


                   ....*....
gi 1039019063 1187 TTQPQSYKV 1195
Cdd:pfam12295  161 RTKPQSFPV 169
SYMPK_PTA1_N pfam11935
Symplekin/PTA1 N-terminal; This is the N-terminal domain found in the symplekin protein from ...
 100-304 3.97e-42

Symplekin/PTA1 N-terminal; This is the N-terminal domain found in the symplekin protein from animals and PTA1 protein from budding yeasts and is typically between 239 to 261 amino acids in length. Symplekin is a scaffold protein that functions as a component of a multimolecular complex involved in histone mRNA 3'-end processing. PTA1 is involved in pre-tRNA processing. PTA1 is a subunit of the cleavage and polyadenylation factor (CPF), which plays a key role in polyadenylation-dependent pre-mRNA 3'-end formation and cooperates with cleavage factors including the CFIA complex and NAB4/CFIB. This domain has the ARM or HEAT fold, with seven pairs of antiparallel alpha-helices arranged in the shape of an arc. It is important for interaction with Ssu72 and stimulates Ssu72 C-terminal domain phosphatase activity in vitro.


:

Pssm-ID: 463403  Cd Length: 218  Bit Score: 153.91  E-value: 3.97e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063  100 TPAVARQVIACGADLFRSTLERVAvqglhsseLNDLLESSWTWLIKFKDEICSVAFKQGNSGVKLCAMKFVEALILLYTP 179
Cdd:pfam11935    1 DPAVVKRVIQAAASIYPLVFRWVA--------KNSNDSELWEKMTAIKSQILNLWDSADNDGVKLCAIKFLERVVLVQTP 72

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063  180 HEGIEA-----DFNISILRGGHPVLKIGDLSIEASQKLGLLLDQLRHPAakSLNSSTIIVLINSLSSVAKKRPAYCGRIL 254
Cdd:pfam11935   73 GDISDRrpdgnDFSLSIVPRNHPLLKPQNLEAEAKGLLDRLLKVLQESP--SISSPLVMATLNSLAIIAKQRPQFASRIL 150

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1039019063  255 PVLLSLDPLSFLKGVYAAATNL---------ALKTVFLSCLKctHPAAAPWKDRLTSAL 304
Cdd:pfam11935  151 SALLSFNPLKKAQSPNLPPTLSklqvksvekTLRIFLLHLLK--NPPSSPLASRIQQAL 207
HEAT COG1413
HEAT repeat [General function prediction only];
52-108 1.23e-04

HEAT repeat [General function prediction only];


:

Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 43.46  E-value: 1.23e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1039019063   52 LPHLFDLLSDQFGAVRKFVAEILGEIGLkyveliPEIVPLLIKSLEDETPAVARQVI 108
Cdd:COG1413     18 VPALIAALADEDPDVRAAAARALGRLGD------PRAVPALLEALKDPDPEVRAAAA 68
ser_rich_anae_1 super family cl41472
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 ...
 1285-1432 6.65e-03

serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 amino acids), which a highly serine-rich central region that averages over 300 aa in length. Species encoding members of this family of proteins tend to be anaerobic bacteria, including Gram-positive bacteria of the human gut microbiome and Chloroflexi from marine sediments.


The actual alignment was detected with superfamily member NF033849:

Pssm-ID: 468206 [Multi-domain]  Cd Length: 1122  Bit Score: 41.14  E-value: 6.65e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063 1285 LSHSQvDHQEPSQVVASQSQSSPIGTVQSAmSQSQNSPIDTGRS-------------EMSQSQNSPIDTGRSEMSQSQNS 1351
Cdd:NF033849   353 ISHSE-SSSESTGTSVGHSTSSSVSSSESS-SRSSSSGVSGGFSggiagggvtseglGASQGGSEGWGSGDSVQSVSQSY 430

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063 1352 PIDTGRSEMSQSQNSpidTGRSEMSeSQSSPIGQSQSSPIGTGQSDMSQTPQVSDSSAPEPTSHTrTSDPQASSQTLRDD 1431
Cdd:NF033849   431 GSSSSTGTSSGHSDS---SSHSTSS-GQADSVSQGTSWSEGTGTSQGQSVGTSESWSTSQSETDS-VGDSTGTSESVSQG 505


                   .
gi 1039019063 1432 D 1432
Cdd:NF033849   506 D 506
 
Name Accession Description Interval E-value
Symplekin_C pfam12295
Symplekin tight junction protein C terminal; This domain family is found in eukaryotes, and is ...
 1032-1195 1.43e-69

Symplekin tight junction protein C terminal; This domain family is found in eukaryotes, and is approximately 180 amino acids in length. There is a single completely conserved residue P that may be functionally important. Symplekn has been localized, by light and electron microscopy, to the plaque associated with the cytoplasmic face of the tight junction-containing zone (zonula occludens) of polar epithelial cells and of Sertoli cells of testis. However, both the mRNA and the protein can also be detected in a wide range of cell types that do not form tight junctions. Careful analyses have revealed that the protein occurs in all these diverse cells in the nucleoplasm, and only in those cells forming tight junctions is it recruited, partly but specifically, to the plaque structure of the zonula occludens.


Pssm-ID: 463523  Cd Length: 185  Bit Score: 231.35  E-value: 1.43e-69
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063 1032 DVEILFPILPFLPRDDVLRIFPHMVNLPMEKFQVALSRVLQGSSQS-----GPVLSPSEALIAIHSIDPARDGIPLKQVT 1106
Cdd:pfam12295    1 DVRFLIPILGGLEKDEVIALLPRLIKLPPEVVKEVFNRLLQAPPSRvnqteGSPLTPVELLVALHNIDPKDDGVPLKRIV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063 1107 DACNTCFAQRQTFTQQVLAGVLNQLVQQIPLPMLFMRTVLQAIGAFPALSDFILEILSRLVSKQIWKYPKLWVGFLKCTQ 1186
Cdd:pfam12295   81 DALDLCFSMTDVFTQEVLAAALQQIVEQPPLPLLFMRTVIQALQKYPSLRSFVANILPRLIQKQVWKNKKLWEGFIKCAK 160


                   ....*....
gi 1039019063 1187 TTQPQSYKV 1195
Cdd:pfam12295  161 RTKPQSFPV 169
SYMPK_PTA1_N pfam11935
Symplekin/PTA1 N-terminal; This is the N-terminal domain found in the symplekin protein from ...
 100-304 3.97e-42

Symplekin/PTA1 N-terminal; This is the N-terminal domain found in the symplekin protein from animals and PTA1 protein from budding yeasts and is typically between 239 to 261 amino acids in length. Symplekin is a scaffold protein that functions as a component of a multimolecular complex involved in histone mRNA 3'-end processing. PTA1 is involved in pre-tRNA processing. PTA1 is a subunit of the cleavage and polyadenylation factor (CPF), which plays a key role in polyadenylation-dependent pre-mRNA 3'-end formation and cooperates with cleavage factors including the CFIA complex and NAB4/CFIB. This domain has the ARM or HEAT fold, with seven pairs of antiparallel alpha-helices arranged in the shape of an arc. It is important for interaction with Ssu72 and stimulates Ssu72 C-terminal domain phosphatase activity in vitro.


Pssm-ID: 463403  Cd Length: 218  Bit Score: 153.91  E-value: 3.97e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063  100 TPAVARQVIACGADLFRSTLERVAvqglhsseLNDLLESSWTWLIKFKDEICSVAFKQGNSGVKLCAMKFVEALILLYTP 179
Cdd:pfam11935    1 DPAVVKRVIQAAASIYPLVFRWVA--------KNSNDSELWEKMTAIKSQILNLWDSADNDGVKLCAIKFLERVVLVQTP 72

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063  180 HEGIEA-----DFNISILRGGHPVLKIGDLSIEASQKLGLLLDQLRHPAakSLNSSTIIVLINSLSSVAKKRPAYCGRIL 254
Cdd:pfam11935   73 GDISDRrpdgnDFSLSIVPRNHPLLKPQNLEAEAKGLLDRLLKVLQESP--SISSPLVMATLNSLAIIAKQRPQFASRIL 150

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1039019063  255 PVLLSLDPLSFLKGVYAAATNL---------ALKTVFLSCLKctHPAAAPWKDRLTSAL 304
Cdd:pfam11935  151 SALLSFNPLKKAQSPNLPPTLSklqvksvekTLRIFLLHLLK--NPPSSPLASRIQQAL 207
HEAT COG1413
HEAT repeat [General function prediction only];
52-108 1.23e-04

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 43.46  E-value: 1.23e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1039019063   52 LPHLFDLLSDQFGAVRKFVAEILGEIGLkyveliPEIVPLLIKSLEDETPAVARQVI 108
Cdd:COG1413     18 VPALIAALADEDPDVRAAAARALGRLGD------PRAVPALLEALKDPDPEVRAAAA 68
HEAT_2 pfam13646
HEAT repeats; This family includes multiple HEAT repeats.
 52-108 1.65e-04

HEAT repeats; This family includes multiple HEAT repeats.


Pssm-ID: 433376 [Multi-domain]  Cd Length: 88  Bit Score: 41.94  E-value: 1.65e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039019063   52 LPHLFDLL-SDQFGAVRKFVAEILGEIGLkyveliPEIVPLLIKSLEDETPAVARQVI 108
Cdd:pfam13646    1 LPALLQALlRDPDPEVRAAAIRALGRIGD------PEAVPALLELLKDEDPAVRRAAA 52
ser_rich_anae_1 NF033849
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 ...
 1285-1432 6.65e-03

serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 amino acids), which a highly serine-rich central region that averages over 300 aa in length. Species encoding members of this family of proteins tend to be anaerobic bacteria, including Gram-positive bacteria of the human gut microbiome and Chloroflexi from marine sediments.


Pssm-ID: 468206 [Multi-domain]  Cd Length: 1122  Bit Score: 41.14  E-value: 6.65e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063 1285 LSHSQvDHQEPSQVVASQSQSSPIGTVQSAmSQSQNSPIDTGRS-------------EMSQSQNSPIDTGRSEMSQSQNS 1351
Cdd:NF033849   353 ISHSE-SSSESTGTSVGHSTSSSVSSSESS-SRSSSSGVSGGFSggiagggvtseglGASQGGSEGWGSGDSVQSVSQSY 430

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063 1352 PIDTGRSEMSQSQNSpidTGRSEMSeSQSSPIGQSQSSPIGTGQSDMSQTPQVSDSSAPEPTSHTrTSDPQASSQTLRDD 1431
Cdd:NF033849   431 GSSSSTGTSSGHSDS---SSHSTSS-GQADSVSQGTSWSEGTGTSQGQSVGTSESWSTSQSETDS-VGDSTGTSESVSQG 505


                   .
gi 1039019063 1432 D 1432
Cdd:NF033849   506 D 506
 
Name Accession Description Interval E-value
Symplekin_C pfam12295
Symplekin tight junction protein C terminal; This domain family is found in eukaryotes, and is ...
 1032-1195 1.43e-69

Symplekin tight junction protein C terminal; This domain family is found in eukaryotes, and is approximately 180 amino acids in length. There is a single completely conserved residue P that may be functionally important. Symplekn has been localized, by light and electron microscopy, to the plaque associated with the cytoplasmic face of the tight junction-containing zone (zonula occludens) of polar epithelial cells and of Sertoli cells of testis. However, both the mRNA and the protein can also be detected in a wide range of cell types that do not form tight junctions. Careful analyses have revealed that the protein occurs in all these diverse cells in the nucleoplasm, and only in those cells forming tight junctions is it recruited, partly but specifically, to the plaque structure of the zonula occludens.


Pssm-ID: 463523  Cd Length: 185  Bit Score: 231.35  E-value: 1.43e-69
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063 1032 DVEILFPILPFLPRDDVLRIFPHMVNLPMEKFQVALSRVLQGSSQS-----GPVLSPSEALIAIHSIDPARDGIPLKQVT 1106
Cdd:pfam12295    1 DVRFLIPILGGLEKDEVIALLPRLIKLPPEVVKEVFNRLLQAPPSRvnqteGSPLTPVELLVALHNIDPKDDGVPLKRIV 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063 1107 DACNTCFAQRQTFTQQVLAGVLNQLVQQIPLPMLFMRTVLQAIGAFPALSDFILEILSRLVSKQIWKYPKLWVGFLKCTQ 1186
Cdd:pfam12295   81 DALDLCFSMTDVFTQEVLAAALQQIVEQPPLPLLFMRTVIQALQKYPSLRSFVANILPRLIQKQVWKNKKLWEGFIKCAK 160


                   ....*....
gi 1039019063 1187 TTQPQSYKV 1195
Cdd:pfam12295  161 RTKPQSFPV 169
SYMPK_PTA1_N pfam11935
Symplekin/PTA1 N-terminal; This is the N-terminal domain found in the symplekin protein from ...
 100-304 3.97e-42

Symplekin/PTA1 N-terminal; This is the N-terminal domain found in the symplekin protein from animals and PTA1 protein from budding yeasts and is typically between 239 to 261 amino acids in length. Symplekin is a scaffold protein that functions as a component of a multimolecular complex involved in histone mRNA 3'-end processing. PTA1 is involved in pre-tRNA processing. PTA1 is a subunit of the cleavage and polyadenylation factor (CPF), which plays a key role in polyadenylation-dependent pre-mRNA 3'-end formation and cooperates with cleavage factors including the CFIA complex and NAB4/CFIB. This domain has the ARM or HEAT fold, with seven pairs of antiparallel alpha-helices arranged in the shape of an arc. It is important for interaction with Ssu72 and stimulates Ssu72 C-terminal domain phosphatase activity in vitro.


Pssm-ID: 463403  Cd Length: 218  Bit Score: 153.91  E-value: 3.97e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063  100 TPAVARQVIACGADLFRSTLERVAvqglhsseLNDLLESSWTWLIKFKDEICSVAFKQGNSGVKLCAMKFVEALILLYTP 179
Cdd:pfam11935    1 DPAVVKRVIQAAASIYPLVFRWVA--------KNSNDSELWEKMTAIKSQILNLWDSADNDGVKLCAIKFLERVVLVQTP 72

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063  180 HEGIEA-----DFNISILRGGHPVLKIGDLSIEASQKLGLLLDQLRHPAakSLNSSTIIVLINSLSSVAKKRPAYCGRIL 254
Cdd:pfam11935   73 GDISDRrpdgnDFSLSIVPRNHPLLKPQNLEAEAKGLLDRLLKVLQESP--SISSPLVMATLNSLAIIAKQRPQFASRIL 150

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1039019063  255 PVLLSLDPLSFLKGVYAAATNL---------ALKTVFLSCLKctHPAAAPWKDRLTSAL 304
Cdd:pfam11935  151 SALLSFNPLKKAQSPNLPPTLSklqvksvekTLRIFLLHLLK--NPPSSPLASRIQQAL 207
HEAT COG1413
HEAT repeat [General function prediction only];
52-108 1.23e-04

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 43.46  E-value: 1.23e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1039019063   52 LPHLFDLLSDQFGAVRKFVAEILGEIGLkyveliPEIVPLLIKSLEDETPAVARQVI 108
Cdd:COG1413     18 VPALIAALADEDPDVRAAAARALGRLGD------PRAVPALLEALKDPDPEVRAAAA 68
HEAT_2 pfam13646
HEAT repeats; This family includes multiple HEAT repeats.
 52-108 1.65e-04

HEAT repeats; This family includes multiple HEAT repeats.


Pssm-ID: 433376 [Multi-domain]  Cd Length: 88  Bit Score: 41.94  E-value: 1.65e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039019063   52 LPHLFDLL-SDQFGAVRKFVAEILGEIGLkyveliPEIVPLLIKSLEDETPAVARQVI 108
Cdd:pfam13646    1 LPALLQALlRDPDPEVRAAAIRALGRIGD------PEAVPALLELLKDEDPAVRRAAA 52
HEAT COG1413
HEAT repeat [General function prediction only];
49-109 5.22e-04

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 41.54  E-value: 5.22e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039019063   49 TELLPHLFDLLSDQFGAVRKFVAEILGEIGLkyveliPEIVPLLIKSLEDETPAVARQVIA 109
Cdd:COG1413     46 PRAVPALLEALKDPDPEVRAAAAEALGRIGD------PEAVPALIAALKDEDPEVRRAAAE 100
HEAT COG1413
HEAT repeat [General function prediction only];
50-108 1.06e-03

HEAT repeat [General function prediction only];


Pssm-ID: 441023 [Multi-domain]  Cd Length: 137  Bit Score: 40.77  E-value: 1.06e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1039019063   50 ELLPHLFDLLSDQFGAVRKFVAEILGEIGlkyvelIPEIVPLLIKSLEDETPAVARQVI 108
Cdd:COG1413     78 EAVPALIAALKDEDPEVRRAAAEALGRLG------DPAAVPALLEALKDPDWEVRRAAA 130
HEAT_2 pfam13646
HEAT repeats; This family includes multiple HEAT repeats.
 50-109 1.22e-03

HEAT repeats; This family includes multiple HEAT repeats.


Pssm-ID: 433376 [Multi-domain]  Cd Length: 88  Bit Score: 39.24  E-value: 1.22e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063   50 ELLPHLFDLLSDQFGAVRKFVAEILGEIGLkyveliPEIVPLLIKSLEDETPAVARQVIA 109
Cdd:pfam13646   31 EAVPALLELLKDEDPAVRRAAAEALGKIGD------PEALPALLELLRDDDDDVVRAAAA 84
ser_rich_anae_1 NF033849
serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 ...
 1285-1432 6.65e-03

serine-rich protein; This serine-rich protein belongs to a family with large size (over 1000 amino acids), which a highly serine-rich central region that averages over 300 aa in length. Species encoding members of this family of proteins tend to be anaerobic bacteria, including Gram-positive bacteria of the human gut microbiome and Chloroflexi from marine sediments.


Pssm-ID: 468206 [Multi-domain]  Cd Length: 1122  Bit Score: 41.14  E-value: 6.65e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063 1285 LSHSQvDHQEPSQVVASQSQSSPIGTVQSAmSQSQNSPIDTGRS-------------EMSQSQNSPIDTGRSEMSQSQNS 1351
Cdd:NF033849   353 ISHSE-SSSESTGTSVGHSTSSSVSSSESS-SRSSSSGVSGGFSggiagggvtseglGASQGGSEGWGSGDSVQSVSQSY 430

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039019063 1352 PIDTGRSEMSQSQNSpidTGRSEMSeSQSSPIGQSQSSPIGTGQSDMSQTPQVSDSSAPEPTSHTrTSDPQASSQTLRDD 1431
Cdd:NF033849   431 GSSSSTGTSSGHSDS---SSHSTSS-GQADSVSQGTSWSEGTGTSQGQSVGTSESWSTSQSETDS-VGDSTGTSESVSQG 505


                   .
gi 1039019063 1432 D 1432
Cdd:NF033849   506 D 506
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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