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Conserved domains on  [gi|1039015528|gb|ANM65069|]
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2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

Protein Classification

cupin domain-containing protein( domain architecture ID 1562428)

cupin domain-containing protein, part of a functionally diverse superfamily with the active site generally located at the center of a conserved domain forming a beta-barrel fold

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cupin_8 super family cl46322
Cupin-like domain; This cupin like domain shares similarity to the JmjC domain.
 188-325 6.07e-28

Cupin-like domain; This cupin like domain shares similarity to the JmjC domain.


The actual alignment was detected with superfamily member pfam13621:

Pssm-ID: 463936  Cd Length: 251  Bit Score: 109.77  E-value: 6.07e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039015528 188 FLRDYYLPGTPVVITNSMAHWPARTKWN---HLDYLNAVAGNRTVPVEVGKN---YLCSD--------WKQELVTFSKFL 253
Cdd:pfam13621   4 FFREYVAKNKPVVIRGAVKDWPAVQKWTdssLLDYLKDKYGDVEVTVEVTPDgraDRLFYnddftfvnPKEERMPFGEFL 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039015528 254 ERMRTNKSSPMEPTYLAQH-PLFDQINELRDDICIPDYCFVGGGELQSLNAWFGPAGTVTPLHHDPHHNILAQ 325
Cdd:pfam13621  84 DRLEAGEDTDTAPYAYLQSdNLRSEFPELLEDNDLPFATEAFGGEPDAVNLWMGNGRSVTSLHYDHYENLYCV 156
 
Name Accession Description Interval E-value
Cupin_8 pfam13621
Cupin-like domain; This cupin like domain shares similarity to the JmjC domain.
 188-325 6.07e-28

Cupin-like domain; This cupin like domain shares similarity to the JmjC domain.


Pssm-ID: 463936  Cd Length: 251  Bit Score: 109.77  E-value: 6.07e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039015528 188 FLRDYYLPGTPVVITNSMAHWPARTKWN---HLDYLNAVAGNRTVPVEVGKN---YLCSD--------WKQELVTFSKFL 253
Cdd:pfam13621   4 FFREYVAKNKPVVIRGAVKDWPAVQKWTdssLLDYLKDKYGDVEVTVEVTPDgraDRLFYnddftfvnPKEERMPFGEFL 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039015528 254 ERMRTNKSSPMEPTYLAQH-PLFDQINELRDDICIPDYCFVGGGELQSLNAWFGPAGTVTPLHHDPHHNILAQ 325
Cdd:pfam13621  84 DRLEAGEDTDTAPYAYLQSdNLRSEFPELLEDNDLPFATEAFGGEPDAVNLWMGNGRSVTSLHYDHYENLYCV 156
 
Name Accession Description Interval E-value
Cupin_8 pfam13621
Cupin-like domain; This cupin like domain shares similarity to the JmjC domain.
 188-325 6.07e-28

Cupin-like domain; This cupin like domain shares similarity to the JmjC domain.


Pssm-ID: 463936  Cd Length: 251  Bit Score: 109.77  E-value: 6.07e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039015528 188 FLRDYYLPGTPVVITNSMAHWPARTKWN---HLDYLNAVAGNRTVPVEVGKN---YLCSD--------WKQELVTFSKFL 253
Cdd:pfam13621   4 FFREYVAKNKPVVIRGAVKDWPAVQKWTdssLLDYLKDKYGDVEVTVEVTPDgraDRLFYnddftfvnPKEERMPFGEFL 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039015528 254 ERMRTNKSSPMEPTYLAQH-PLFDQINELRDDICIPDYCFVGGGELQSLNAWFGPAGTVTPLHHDPHHNILAQ 325
Cdd:pfam13621  84 DRLEAGEDTDTAPYAYLQSdNLRSEFPELLEDNDLPFATEAFGGEPDAVNLWMGNGRSVTSLHYDHYENLYCV 156
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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