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Conserved domains on  [gi|908255211|gb|AKS93173|]
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hypothetical protein M483_3377 [Yersinia pestis 3770]

Protein Classification

zf-TFIIB domain-containing protein( domain architecture ID 10008034)

zf-TFIIB domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3809 COG3809
Predicted nucleic acid-binding protein, contains Zn-finger domain [General function prediction ...
 1-44 4.11e-20

Predicted nucleic acid-binding protein, contains Zn-finger domain [General function prediction only];


:

Pssm-ID: 443022  Cd Length: 59  Bit Score: 75.47  E-value: 4.11e-20
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 908255211  1 MECPVCNnTQLVMTERKSIEIDYCPNCRGVWLDRGKLDKLIEKS 44
Cdd:COG3809   3 MLCPKCG-APMRVVERSGVEIDYCPSCGGVWLDRGELEKLLEAE 45
 
Name Accession Description Interval E-value
COG3809 COG3809
Predicted nucleic acid-binding protein, contains Zn-finger domain [General function prediction ...
 1-44 4.11e-20

Predicted nucleic acid-binding protein, contains Zn-finger domain [General function prediction only];


Pssm-ID: 443022  Cd Length: 59  Bit Score: 75.47  E-value: 4.11e-20
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 908255211  1 MECPVCNnTQLVMTERKSIEIDYCPNCRGVWLDRGKLDKLIEKS 44
Cdd:COG3809   3 MLCPKCG-APMRVVERSGVEIDYCPSCGGVWLDRGELEKLLEAE 45
zf-TFIIB pfam13453
Transcription factor zinc-finger;
3-43 4.83e-16

Transcription factor zinc-finger;


Pssm-ID: 433221  Cd Length: 41  Bit Score: 64.63  E-value: 4.83e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 908255211   3 CPVCNNTqLVMTERKSIEIDYCPNCRGVWLDRGKLDKLIEK 43
Cdd:pfam13453  2 CPKCGAE-LEEVERDGVEIDYCPQCRGIWLDRGELEKLLER 41
 
Name Accession Description Interval E-value
COG3809 COG3809
Predicted nucleic acid-binding protein, contains Zn-finger domain [General function prediction ...
 1-44 4.11e-20

Predicted nucleic acid-binding protein, contains Zn-finger domain [General function prediction only];


Pssm-ID: 443022  Cd Length: 59  Bit Score: 75.47  E-value: 4.11e-20
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 908255211  1 MECPVCNnTQLVMTERKSIEIDYCPNCRGVWLDRGKLDKLIEKS 44
Cdd:COG3809   3 MLCPKCG-APMRVVERSGVEIDYCPSCGGVWLDRGELEKLLEAE 45
zf-TFIIB pfam13453
Transcription factor zinc-finger;
3-43 4.83e-16

Transcription factor zinc-finger;


Pssm-ID: 433221  Cd Length: 41  Bit Score: 64.63  E-value: 4.83e-16
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 908255211   3 CPVCNNTqLVMTERKSIEIDYCPNCRGVWLDRGKLDKLIEK 43
Cdd:pfam13453  2 CPKCGAE-LEEVERDGVEIDYCPQCRGIWLDRGELEKLLER 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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