|
Name |
Accession |
Description |
Interval |
E-value |
| flgG |
PRK12693 |
flagellar basal body rod protein FlgG; Provisional |
1-261 |
5.89e-147 |
|
flagellar basal body rod protein FlgG; Provisional
Pssm-ID: 183687 [Multi-domain] Cd Length: 261 Bit Score: 411.18 E-value: 5.89e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 1 MNSALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNQRTPGAPLDQNNTTPSGIQFGSGVQIVGTQKQ 80
Cdd:PRK12693 1 MIRALWIAKTGLDAQQTNIDVISNNLANVNTTGFKKSRAVFEDLLYQTIRQPGAQSSQNTTLPSGLQVGTGVRPVATQKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 81 FTVGNIKVTKGDMDVAITGQGFFQIETADGGIAYTRAGNLTTNADGVLVNAQGMPLIPQIELPTGSKQLHIGKDGTVTAT 160
Cdd:PRK12693 81 FTQGNLQQTGNSLDVAIEGQGFFQVQLPDGTIAYTRDGSFKLDQDGQLVTSGGYPLQPEITIPENATSITIGTDGTVSVT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 161 VGGETEPVEVGQITLVNFINPAGLEAIGGNLYRETAASGEAVEGVPGEEAFGQLEQGALEGSNVQVVEEMVDMITVQRAY 240
Cdd:PRK12693 161 QAGQAAPQVVGQITLTDFINPAGLESIGENLYLETAASGAPIEGTPGLNGLGTLRQGFLETSNVNVVEELVNMITGQRAY 240
|
250 260
....*....|....*....|.
gi 908255196 241 EMNAKMVSAADDMLKFVSQKL 261
Cdd:PRK12693 241 EMNSKAISTADQMLQYVNQLL 261
|
|
| flgG_G_neg |
TIGR02488 |
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the ... |
4-261 |
3.20e-129 |
|
flagellar basal-body rod protein FlgG, Gram-negative bacteria; This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 131541 [Multi-domain] Cd Length: 259 Bit Score: 366.29 E-value: 3.20e-129
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 4 ALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNQRTPGAPLDQNNT-TPSGIQFGSGVQIVGTQKQFT 82
Cdd:TIGR02488 1 ALWTAATGMNAQQTNMDVISNNLANVNTTGFKKDRAEFEDLLYQTERQPGAQSSEQQTiLPVGVQVGLGVRVVATQKLFT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 83 VGNIKVTKGDMDVAITGQGFFQIETADGGIAYTRAGNLTTNADGVLVNAQGMPLIPQIELPTGSKQLHIGKDGTVTATVG 162
Cdd:TIGR02488 81 QGSLQNTGNDLDLAIEGEGFFQVLMPDGTTAYTRDGAFKINAEGQLVTSNGYPLQPEITIPENATSITVGSDGEVSVRQG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 163 GETEPVEVGQITLVNFINPAGLEAIGGNLYRETAASGEAVEGVPGEEAFGQLEQGALEGSNVQVVEEMVDMITVQRAYEM 242
Cdd:TIGR02488 161 GQTEPQEVGQITLATFINPAGLEAVGENLFRETPASGPPQIGTPGLDGFGKLRQGFLEASNVNVVQEMVDMITAQRAYEM 240
|
250
....*....|....*....
gi 908255196 243 NAKMVSAADDMLKFVSQKL 261
Cdd:TIGR02488 241 NSKAIQASDQMLQTVSQLL 259
|
|
| FlgG |
COG4786 |
Flagellar basal body rod protein FlgG [Cell motility]; |
5-261 |
3.40e-125 |
|
Flagellar basal body rod protein FlgG [Cell motility];
Pssm-ID: 443816 [Multi-domain] Cd Length: 260 Bit Score: 356.05 E-value: 3.40e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 5 LWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNQRTPGAPLDQNNTTPSGIQFGSGVQIVGTQKQFTVG 84
Cdd:COG4786 1 LYTAASGMLAQQTRLDVISNNLANVNTTGFKRDRAVFEDLLYQLIRRPGAPSSQGTQTPVGLQLGTGVRVAATQTDFTQG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 85 NIKVTKGDMDVAITGQGFFQIETADGGIAYTRAGNLTTNADGVLVNAQGMPLIPQ---IELPTGSKQLHIGKDGTVTATV 161
Cdd:COG4786 81 SLQQTGNPLDLAIEGDGFFQVQTPDGETAYTRDGSFQLDADGQLVTSDGYPVLPEngpITIPEDATSITISEDGTVSVTL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 162 gGETEPVEVGQITLVNFINPAGLEAIGGNLYRETAASGEAVEGVPGEEAFGQLEQGALEGSNVQVVEEMVDMITVQRAYE 241
Cdd:COG4786 161 -ADGDGQQVGQLGLVDFANPAGLEKVGDNLFRETAASGAPIVGTPGEDGLGTLRQGYLEGSNVDVVEEMVDMIEAQRAYE 239
|
250 260
....*....|....*....|
gi 908255196 242 MNAKMVSAADDMLKFVSQKL 261
Cdd:COG4786 240 ANSKVIQTADEMLGKANNLR 259
|
|
| flgG |
PRK12816 |
flagellar basal body rod protein FlgG; Reviewed |
1-254 |
8.46e-98 |
|
flagellar basal body rod protein FlgG; Reviewed
Pssm-ID: 183766 [Multi-domain] Cd Length: 264 Bit Score: 287.09 E-value: 8.46e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 1 MNSALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNQRTPGAPLDQNNTTPSGIQFGSGVQIVGTQKQ 80
Cdd:PRK12816 1 MMRSLWTAASGMNAQQFNIDTIANNLANVNTTGFKKIRAEFEDLIYQTQRRAGTPATEDTVTPLGVQVGHGVKVAATQRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 81 FTVGNIKVTKGDMDVAITGQGFFQIETADGGIAYTRAGNLTTNADGVLVNAQGMPLIPQIELPTG--SKQLHIGKDGTVT 158
Cdd:PRK12816 81 FEQGSLQATGNKLDVAIEGEGFFKILMPDGTYAYTRDGSFKIDANGQLVTSNGYRLLPEIIFPENyiLNSITISEEGIVS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 159 ATVGGETEPVEVGQITLVNFINPAGLEAIGGNLYRETAASGEAVEGVPGEEAFGQLEQGALEGSNVQVVEEMVDMITVQR 238
Cdd:PRK12816 161 VKVGEDNDPIELGQIELYRFVNPAGLSAIGKNLFKETIASGQEIPGIPGSEGFGRVLQGFLEMSNVSIVEEMVTMIVAQR 240
|
250
....*....|....*.
gi 908255196 239 AYEMNAKMVSAADDML 254
Cdd:PRK12816 241 AYEINSKAIQTSDNML 256
|
|
| FlgEFG_subfam |
TIGR03506 |
flagellar hook-basal body protein; This model encompasses three closely related flagellar ... |
3-243 |
2.05e-86 |
|
flagellar hook-basal body protein; This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog models, TIGR02489, TIGR02490 and TIGR02488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.
Pssm-ID: 274616 [Multi-domain] Cd Length: 231 Bit Score: 256.80 E-value: 2.05e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 3 SALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNQRTPGAPldqnnttpsgiqfGSGVQIVGTQKQFT 82
Cdd:TIGR03506 1 MALYTALSGLNAQSSALDVIANNIANANTTGFKRSRAEFQDLLSQSVSGSGQV-------------GGGVRTSGVATDFS 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 83 VGNIKVTKGDMDVAITGQGFFQIETADGGIAYTRAGNLTTNADGVLVNAQGMPLIP----QIELPTGSKQLHIGKDGTVT 158
Cdd:TIGR03506 68 QGSLQSTGNSLDLAISGDGFFVVQTPDGSEAYTRAGSFKLDADGYLVTSDGYPLLDwgggPITLPPDAGSVSIGEDGTVS 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 159 ATVGGETEpVEVGQITLVNFINPAGLEAIGGNLYRETAASGEAVEGVPGEEAFGQLEQGALEGSNVQVVEEMVDMITVQR 238
Cdd:TIGR03506 148 ATYSNGQT-VELGQIALANFPNPDGLRKEGGNLYSATPGSGAALVGAPGTGGFGTLVSGALEGSNVDLAEELVNMISAQR 226
|
....*
gi 908255196 239 AYEMN 243
Cdd:TIGR03506 227 AYQAN 231
|
|
| flgG |
PRK12692 |
flagellar basal body rod protein FlgG; Reviewed |
4-261 |
3.25e-79 |
|
flagellar basal body rod protein FlgG; Reviewed
Pssm-ID: 139158 [Multi-domain] Cd Length: 262 Bit Score: 239.75 E-value: 3.25e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 4 ALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNQRTPGAP-LDQNNTTPSGIQFGSGVQIVGTQKQFT 82
Cdd:PRK12692 3 ALAIAATGMSAQQLNLEVIANNIANLNTTGFKGARAEFTDLLYQAERQQGVPnQAGQEAVPEGAMLGLGVRAAAIRNLHR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 83 VGNIKVTKGDMDVAITGQGFFQIETADGGIAYTRAGNLTTNADGVLVNAQGMPLIPQIELPTGSKQLHIGKDGTVTATVG 162
Cdd:PRK12692 83 QGSLAQTGNQLDLAVNGRGYFQVTSPNGEIQYTRAGSFNKNAAGQLVTMEGYAVDPAILIPQNTTQVTINESGQVFAKID 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 163 GETEPVEVGQITLVNFINPAGLEAIGGNLYRETAASGEAVEGVPGEEAFGQLEQGALEGSNVQVVEEMVDMITVQRAYEM 242
Cdd:PRK12692 163 GQVAPQNLGQLTLANFANESGLEPLGNGLYRETPASGAPVVGNPGDVGFGKIQQGYLEGSNVDPVKEITSLITAQRAFEM 242
|
250
....*....|....*....
gi 908255196 243 NAKMVSAADDMLKFVSQKL 261
Cdd:PRK12692 243 NSKVIQAADEMAGTVSKGI 261
|
|
| flgG |
PRK12636 |
flagellar basal body rod protein FlgG; Provisional |
18-255 |
1.29e-61 |
|
flagellar basal body rod protein FlgG; Provisional
Pssm-ID: 183640 [Multi-domain] Cd Length: 263 Bit Score: 194.59 E-value: 1.29e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 18 KMGAISNNLANVNTDGFKRDRVVFADLFYQNQRTPGAPLDQNNTTPSGiQFGSGVQIVGTQKQFTVGNIKVTKGDMDVAI 97
Cdd:PRK12636 18 KLDVIGNNIANVNTYGFKKSRVTFKDMVSQTISGASGPTANRGGVNSK-QVGLGSQLGAIDTIHTQGSLQTTGRPLDLAI 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 98 TGQGFFQIETADGgIAYTRAGNLTTNADGVLVNAQGMPLI----PQIELPTGSKQLHIGKDGTVTATVGGETEPVeVGQI 173
Cdd:PRK12636 97 SGDGFFRVGDGDN-TAYTRAGNFYLDNEGNIVNADGLYLLgmngGRIQIPTDAQSFSIGADGTVSYVDAGGELQT-AGQI 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 174 TLVNFINPAGLEAIGGNLYRETAASGEAVEGVPGEEAFGQLEQGALEGSNVQVVEEMVDMITVQRAYEMNAKMVSAADDM 253
Cdd:PRK12636 175 GLATFANPDGLEKAGDNLYRETLNSGTPSAVVPGEGGTGKIVSGALEMSNVDLAEEFTEMIVAQRGFQANTRIITTSDEI 254
|
..
gi 908255196 254 LK 255
Cdd:PRK12636 255 LQ 256
|
|
| FlgE |
COG1749 |
Flagellar hook protein FlgE [Cell motility]; |
1-254 |
1.06e-55 |
|
Flagellar hook protein FlgE [Cell motility];
Pssm-ID: 441355 [Multi-domain] Cd Length: 414 Bit Score: 183.83 E-value: 1.06e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 1 MNSALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNQRTPGapldqnnttpsGIQFGSGVQIVGTQKQ 80
Cdd:COG1749 1 MMMSFNTGVSGLNAASTALDVIGNNIANSNTVGFKSSRAEFADLVAQSLSGAN-----------PTQVGGGVRVASVAQI 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 81 FTVGNIKVTKGDMDVAITGQGFFQIETADGGIAYTRAGNLTTNADGVLVNAQGMPL----------------------IP 138
Cdd:COG1749 70 FTQGSLQSTGNALDLAISGNGFFVVSDSGGQTYYTRAGSFSLDKDGYLVNSSGLYLqgypadadgtipdtggglepiqIP 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 139 QIELP--------------------------------------------------------------------------- 143
Cdd:COG1749 150 TGQLPakattkvtlggnlpadatvptapfdptdpttynfstsvtvydslgnshtltlyftktgantwtvyvtvdgadvtg 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 144 ---------------------------------------------TGSKQL----------------------HIGKDGT 156
Cdd:COG1749 230 gtgatgtgtltfdsngkltsptsggpgtltltvngaapqtitldlSGLTQYassfsvtsltqdgyaagtltgvSIDDDGV 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 157 VTATVG-GETEPveVGQITLVNFINPAGLEAIGGNLYRETAASGEAVEGVPGEEAFGQLEQGALEGSNVQVVEEMVDMIT 235
Cdd:COG1749 310 VTATYSnGQTRP--LGQIALATFANPQGLQKLGGNLWAETANSGEPLLGTAGTGGLGSIQSGALESSNVDLAEELVNMIV 387
|
410
....*....|....*....
gi 908255196 236 VQRAYEMNAKMVSAADDML 254
Cdd:COG1749 388 AQRAYQANAKVITTSDEML 406
|
|
| flgG |
PRK12817 |
flagellar basal body rod protein FlgG; Reviewed |
1-253 |
3.35e-53 |
|
flagellar basal body rod protein FlgG; Reviewed
Pssm-ID: 183767 [Multi-domain] Cd Length: 260 Bit Score: 172.95 E-value: 3.35e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 1 MNSALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNQRTPGAPLDQNNTtpsgIQFGSGVQIVGTQKQ 80
Cdd:PRK12817 1 MLRAFWNSKSGMNAQQEKLDSISNNLANVNTTGYKREDVSFSDLVYETLDRKGYPTNDKPE----IITGTGVKATNWIRD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 81 FTVGNIKVTKGDMDVAITGQGFFQIETADGGIAYTRAGNLTTNADGVLVNAQGMPLIPQIELPTG---------SKQLHI 151
Cdd:PRK12817 77 NQQGNLLTTGNKTDLAIDGEGFFRVIMADGTYAYTRAGNFNIDSNGMLVDDNGNRLEIQLEAGVGinnrntgfdSNNFTV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 152 GKDGTVTaTVGGETEPVEVGQITLVNFINPAGLEAIGGNLYRetaasgeAVEGV-PGEEAFGQLEQGALEGSNVQVVEEM 230
Cdd:PRK12817 157 DEDGGIS-VKNVDGQNKKVGKINIYNAVGNDAFISIGDNLYV-------PSDGVqVFLNNDVDILQGYLENSNVDLGKEM 228
|
250 260
....*....|....*....|...
gi 908255196 231 VDMITVQRAYEMNAKMVSAADDM 253
Cdd:PRK12817 229 TDMIITQRAFQLSSKGIKTADEM 251
|
|
| FlgF |
COG4787 |
Flagellar basal body rod protein FlgF [Cell motility]; |
1-253 |
1.96e-52 |
|
Flagellar basal body rod protein FlgF [Cell motility];
Pssm-ID: 443817 [Multi-domain] Cd Length: 246 Bit Score: 170.70 E-value: 1.96e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 1 MNSALWVSKTGLAAQDAKMGAISNNLANVNTDGFKrdrvvfADLF-YQNQRTPGAPLD---QNNTTPSGIQFgsgvqivg 76
Cdd:COG4787 1 MDRLIYTAMSGAKQTLEAQAVTANNLANASTTGFR------ADLEaARAVPVQGEGLPtraFAVTETPGTDF-------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 77 tqkqfTVGNIKVTKGDMDVAITGQGFFQIETADGGIAYTRAGNLTTNADGVLVNAQGMPLI----PqIELPTGSKqLHIG 152
Cdd:COG4787 67 -----SPGPLQQTGRPLDVAIQGDGWLAVQAPDGSEAYTRAGDLQVDANGQLVTGNGLPVLgdggP-ITIPPGAK-VTIG 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 153 KDGTVTATVGGE--TEPVEVGQITLVNfINPAGLEAIGGNLYRetAASGEAVEGVPGeeafGQLEQGALEGSNVQVVEEM 230
Cdd:COG4787 140 ADGTISIVPAGGppNALAEVGRLKLVN-PDPAQLVKGDDGLFR--LKDGGPLPADPN----VRVVSGALEGSNVNAVEEM 212
|
250 260
....*....|....*....|...
gi 908255196 231 VDMITVQRAYEMNAKMVSAADDM 253
Cdd:COG4787 213 VSMISLARQFEMQMKMMKTADEN 235
|
|
| flgF |
PRK12640 |
flagellar basal body rod protein FlgF; Reviewed |
1-253 |
1.36e-49 |
|
flagellar basal body rod protein FlgF; Reviewed
Pssm-ID: 183642 [Multi-domain] Cd Length: 246 Bit Score: 163.49 E-value: 1.36e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 1 MNSALWVSKTGlAAQDAK-MGAISNNLANVNTDGFKRDrvvfadlfyqnqrtpgapLDQNNTTPSgiqFGSG------VQ 73
Cdd:PRK12640 1 MDRALYTAMSG-ASQNLNqQAVVANNLANASTPGFRAD------------------LAQARAVPV---FGEGlptrvfAL 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 74 IVGTQKQFTVGNIKVTKGDMDVAITGQGFFQIETADGGIAYTRAGNLTTNADGVLVNAQGMPLI----PqIELPTGSKqL 149
Cdd:PRK12640 59 ASTPGADFSPGPLQTTGRPLDVALQGDGWLAVQAPDGSEAYTRNGSLQVDANGQLRTANGLPVLgdggP-IAVPPGAK-I 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 150 HIGKDGTVTATVGGE--TEPVEVGQITLVNfINPAGLEAIGGNLYRetAASGEAVEGVPGEeafgQLEQGALEGSNVQVV 227
Cdd:PRK12640 137 TIGADGTISALPPGDppNAVAEVGRLKLVN-PPAAQLTRGDDGLFR--TTDGAPAPADPTV----RVMSGALEGSNVNAV 209
|
250 260
....*....|....*....|....*.
gi 908255196 228 EEMVDMITVQRAYEMNAKMVSAADDM 253
Cdd:PRK12640 210 EEMVSMIALARQFEMQVKMMKTADEN 235
|
|
| flgE |
PRK05682 |
flagellar hook protein FlgE; Validated |
1-254 |
1.02e-46 |
|
flagellar hook protein FlgE; Validated
Pssm-ID: 235557 [Multi-domain] Cd Length: 407 Bit Score: 160.39 E-value: 1.02e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 1 MNSALwvskTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNQRTpgapldqnnttpSGIQFGSGVQIVGTQKQ 80
Cdd:PRK05682 3 FNTAV----SGLNAASNRLDVIGNNIANANTTGFKSSRAEFADLYANSAGT------------NPTQVGSGVKVAGVAQQ 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 81 FTVGNIKVTKGDMDVAITGQGFFqIETADGGIAYTRAGNLTTNADGVLVNAQGMPL-----------------------I 137
Cdd:PRK05682 67 FSQGSITSTGNSLDLAISGNGFF-VVSNGGNGFYTRAGAFKLDKNGYLVNAAGYYLqgypadadggtpptvgaglvplnI 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 138 PQIELP-------------------------------------------------------------------------- 143
Cdd:PRK05682 146 PTTALApkattsgtfqgnlpstaafdptdpdtynhstsltvydslgnshtldvyfvktgdntwevyvyddgkpvsttatg 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 144 -------------------------------------------TGSKQL----------------------HIGKDGTVT 158
Cdd:PRK05682 226 tgtttltfdsngalttttspttfnitggatngadggqtitldlSGSTQYasgftvsattqdgyapgtltgySIDDDGTVT 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 159 AT-VGGETEPveVGQITLVNFINPAGLEAIGGNLYRETAASGEAVEGVPGEEAFGQLEQGALEGSNVQVVEEMVDMITVQ 237
Cdd:PRK05682 306 AVySNGQTKP--LGQIALANFANPDGLTKVGGNVWSATAASGVALIGTAGSGGFGTIQSGALESSNVDLSTELVNMIVAQ 383
|
410
....*....|....*..
gi 908255196 238 RAYEMNAKMVSAADDML 254
Cdd:PRK05682 384 RNYQANAKTIKTQDQLL 400
|
|
| flgF |
PRK12689 |
flagellar basal-body rod protein FlgF; |
1-261 |
1.23e-44 |
|
flagellar basal-body rod protein FlgF;
Pssm-ID: 183684 [Multi-domain] Cd Length: 253 Bit Score: 150.67 E-value: 1.23e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 1 MNSALWVsktGLAAQDA---KMGAISNNLANVNTDGFKRDRVVFadlfyQNQRTPGAPLDQNNTTPSGIQFgsgVQIVGT 77
Cdd:PRK12689 1 MQNALLV---GLSRQMAlerQLDVVANNVANVNTNGFKARSSLF-----QEYLMPGAHEDNFQRPDRRVSY---VQDRGT 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 78 QKQFTVGNIKVTKGDMDVAITGQGFFQIETAdGGIAYTRAGNLTTNADGVLVNAQGMPLI----PQIELPTgSKQLHIGK 153
Cdd:PRK12689 70 PLDLSQGPLEQTKNPLDVAIDGDAFLAVQTP-QGERYTRDGALEINAQGQLVTSDGYPVLgtggPITFQPT-DTGIAISP 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 154 DGTVTATVGGETEPVEVGQITLVNFINPAGLEAIGGNLYretaasgEAVEGVPGEEAFGQLEQGALEGSNVQVVEEMVDM 233
Cdd:PRK12689 148 DGTVSVNEGTATTDSIRGKLRLVTFANPQALKKEGANLY-------AATAPARPADTKARVEQGYIERSNVNPVLEMTRM 220
|
250 260
....*....|....*....|....*...
gi 908255196 234 ITVQRAYEMNAKMVSAADDMLKFVSQKL 261
Cdd:PRK12689 221 MEVNRTYTQVSSMLQQQSDLRKTAIERL 248
|
|
| flgF |
PRK12690 |
flagellar hook-basal body complex protein; |
19-255 |
8.79e-42 |
|
flagellar hook-basal body complex protein;
Pssm-ID: 183685 [Multi-domain] Cd Length: 238 Bit Score: 142.90 E-value: 8.79e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 19 MGAISNNLANVNTDGFKRDRVVFADlFYQNQRTPGAPLdqnnttpsgiqfgSGVQIVGTQKQFTVGNIKVTKGDMDVAIT 98
Cdd:PRK12690 19 MQVVANNIANASTTGFRREGLVFSE-YVKSLDSGEASL-------------SMARASGRQTDLEQGGLTQTGGQFDFAIE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 99 GQGFFQIETADGGiAYTRAGNLTTNADGVLVNAQGMPLIPQ----IELPTGSKQLHIGKDGTVTAtvGGETepveVGQIT 174
Cdd:PRK12690 85 GEGFFMVETPQGE-RLTRAGSFTPNAEGELVDPDGNRLLDAggapIFIPPDARSVAVGADGTLSA--DGQP----LGQIG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 175 LVNFINPAGLEAIGGNLYRetaasgeAVEGV-PGEEAfgQLEQGALEGSNVQVVEEMVDMITVQRAYEMNAKMVSAADDM 253
Cdd:PRK12690 158 LYQPTDPLGLRREGGTRFR-------AEGGVePAEGA--RLLQGFLEGSNVNPVSEIARMIEVQRAYELGQSFLDREDER 228
|
..
gi 908255196 254 LK 255
Cdd:PRK12690 229 IR 230
|
|
| flgG |
PRK12818 |
flagellar basal body rod protein FlgG; Reviewed |
1-254 |
5.11e-35 |
|
flagellar basal body rod protein FlgG; Reviewed
Pssm-ID: 183768 [Multi-domain] Cd Length: 256 Bit Score: 125.97 E-value: 5.11e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 1 MNSALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVV---FADLFYQN-QRTPGAPLDQNNTtpSGIQFGSGVQIVG 76
Cdd:PRK12818 1 MIRGLYTAVSGMITLEAKQDVITNNLANVNTVGYKSDNLAfksFEDVLIENyDKKVGNKNVKNII--GGLSMGSKIDEVN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 77 TQkqFTVGNIKVTKGDMDVAITGQGFFQIETADGGIAYTRAGNLTTNADGVLVNAQGMPLIpQIELPTGSKQ-LHIGKdG 155
Cdd:PRK12818 79 TL--FTQGIIKSTDKPTDFAIQGRGFFTVERNAGNNYYTRDGHFHVDTQGYLVNDSGYYVL-GRNNATGAREpINVGN-G 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 156 TVTATVGGE--TEPVEVGQITLVNFINPAGLEAIGGNLYRETAASGEAVEGVpgeeafgqlEQGALEGSNVQVVEEMVDM 233
Cdd:PRK12818 155 KFSTDADGNisLDGNASYKFNVADFNDYNSLKKIGDNLYTGNNPQNINGAIV---------RQNSLEKSNVNVTNEMVNM 225
|
250 260
....*....|....*....|.
gi 908255196 234 ITVQRAYEMNAKMVSAADDML 254
Cdd:PRK12818 226 MTTMRSFETNQKIVQSIDETL 246
|
|
| flgF |
PRK12642 |
flagellar basal-body rod protein FlgF; |
1-255 |
3.39e-26 |
|
flagellar basal-body rod protein FlgF;
Pssm-ID: 237153 [Multi-domain] Cd Length: 241 Bit Score: 102.43 E-value: 3.39e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 1 MNSALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFyqnqrtpgapldqNNTTPSGIQFGS-GVQIVGTQK 79
Cdd:PRK12642 1 MQSGLYVALSSQMALEKRLDTIADNVANVNTVGFRATEVKFDTVV-------------SDTASKKVAFVSqGKSYLSTEA 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 80 qftvGNIKVTKGDMDVAITGQGFFQIETADgGIAYTRAGNLTTNADGVLVNAQGMPLI----PQIELPTGSKQLHIGKDG 155
Cdd:PRK12642 68 ----GPLTKTGNPLDFAVKGDAWFSFDTPA-GQVYTRDGRFTMTSTGELVSVTGYPVLdaggAPIQLNPGGGEPTIGADG 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 156 TVTatvggeTEPVEVGQITLVNFINPAGLEAIgGNLYRETAASGEAVEGVPGEeafgQLEQGALEGSNVQVVEEMVDMIT 235
Cdd:PRK12642 143 AIY------QNGVQVGAIGLFEIDADAGLLRY-GNSGVIPDKPPQPVVDRNSV----GVVQGYLEGSNVNAMTEMTQLIS 211
|
250 260
....*....|....*....|
gi 908255196 236 VQRAYEMNAKMVSAADDMLK 255
Cdd:PRK12642 212 VSRAFESVSSLMRQSESSVS 231
|
|
| Flg_bbr_C |
pfam06429 |
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of ... |
182-259 |
7.67e-26 |
|
Flagellar basal body rod FlgEFG protein C-terminal; This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.
Pssm-ID: 428939 [Multi-domain] Cd Length: 74 Bit Score: 96.57 E-value: 7.67e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 908255196 182 AGLEAIGGNLYRETAasGEAVEGVpgeEAFGQLEQGALEGSNVQVVEEMVDMITVQRAYEMNAKMVSAADDMLKFVSQ 259
Cdd:pfam06429 1 AGLEKGGDNLFRETD--GAPILGA---GADGRVQQGYLEGSNVNPVEEMVNMIEAQRAYEANSKVIQTADEMLQTANQ 73
|
|
| flgE |
PRK06803 |
flagellar basal body protein FlaE; |
10-255 |
9.87e-24 |
|
flagellar basal body protein FlaE;
Pssm-ID: 235862 [Multi-domain] Cd Length: 402 Bit Score: 98.69 E-value: 9.87e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 10 TGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNQrtPGapldqnnttpsgiqfgsGVQIVGTQKQFTVGNIKVT 89
Cdd:PRK06803 8 SGLNATTQQLNTISNNIANSSTKGFKGSRTEFSSIYNGGQ--PG-----------------GVEVSSVSQNFSKDGSLTY 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 90 KG-DMDVAITGQGFFQIETADGGIAYTRAGNLTTNADGVLVNAQGMPL---------------IPQIELPTGSK------ 147
Cdd:PRK06803 69 TGrGLDLAISGGGFFVLKESDGDTAYTRAGMFRSDVDGYLTDPQGMKLqgypvdaagnlqtgnVSDLQVQTASLpakatd 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 148 ------------------------------------------------------------QLHIGKDGTVTATVG----- 162
Cdd:PRK06803 149 qldfvanldasvtpidpsvspfdptdeksynssttstvydslgnehavtqyfvktatnewAVHYTVDGGDVTPPLghtlq 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 163 ---------------------------------------------------------GETEPVEV--------------- 170
Cdd:PRK06803 229 fddtgalipgkgstinlhgtfnpagasdydididytgstqyaadfnnsrnksngytsGELNGVRIedngmvyatytngqr 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 171 ---GQITLVNFINPAGLEAIGGNLYRETAASGEAVEGVPGEEAFGQLEQGALEGSNVQVVEEMVDMITVQRAYEMNAKMV 247
Cdd:PRK06803 309 qlqGQVVLANFANPNGLVTVSNTAWSASNKSGAPILGTPGTGTLGSLTSGALEGSNVDITAELVGLMTAQRNYQANAKVI 388
|
....*...
gi 908255196 248 SAADDMLK 255
Cdd:PRK06803 389 STNDTMQQ 396
|
|
| flgE |
PRK08425 |
flagellar hook protein FlgE; Validated |
1-133 |
2.29e-21 |
|
flagellar hook protein FlgE; Validated
Pssm-ID: 236263 [Multi-domain] Cd Length: 731 Bit Score: 92.84 E-value: 2.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 1 MNSALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNQRTPGAPLD----QNNttpsgIQFGSGVQIVG 76
Cdd:PRK08425 1 MMRSLWSGVSGLQAHQIAMDVEGNNIANVNTTGFKYSRASFVDMLSQTKLIATAPKGglggQND-----MQIGLGVGVSS 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 908255196 77 TQKQFTVGNIKVTKGDMDVAITGQGFFqIETADGGI--AYTRAGNLTTNADGVLVNAQG 133
Cdd:PRK08425 76 TTKIFSQGSIQNTDKNTDLAIQGDGFF-IVSPDGGTtrNYTRDGDFKFDAQGNFVNNGG 133
|
|
| flgF |
TIGR02490 |
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several ... |
140-241 |
1.47e-20 |
|
flagellar basal-body rod protein FlgF; Members of this protein are FlgF, one of several homologous flagellar basal-body rod proteins in bacteria. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274160 [Multi-domain] Cd Length: 89 Bit Score: 83.06 E-value: 1.47e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 140 IELPTGSKqLHIGKDGTVTatvggeTEPVEVGQITLVNFINPAGLEAIGGNLYRETAAsgeavEGVPGEEAFgQLEQGAL 219
Cdd:TIGR02490 1 IVLPPDGD-ITIGADGTIS------QDGEEVGRLGLVNFDNPNQLQREGDGLFRATGG-----GPAPADSNV-RVVQGYL 67
|
90 100
....*....|....*....|..
gi 908255196 220 EGSNVQVVEEMVDMITVQRAYE 241
Cdd:TIGR02490 68 EGSNVNAVSEMVDMIEAQRAYE 89
|
|
| flgF |
PRK12641 |
flagellar basal-body rod protein FlgF; |
1-259 |
7.07e-19 |
|
flagellar basal-body rod protein FlgF;
Pssm-ID: 105809 [Multi-domain] Cd Length: 252 Bit Score: 83.07 E-value: 7.07e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 1 MNSALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLfyQNQRtpgaplDQNNTTPsgiqfgsgvQIVGTQKQ 80
Cdd:PRK12641 1 MENSIYKSMIAANKLLEKQAIIANNLANISTTGFKEKFILAIQN--HNVK------NLYNSDK---------KITKEYYN 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 81 FTVGNIKVTKGDMDVAITGQGFFQIETADGGIAYTRAGNLTTNADGVLvNAQGMPLIP---QIELPTgSKQLHIGKDGTV 157
Cdd:PRK12641 64 LSPGTLRYTGRNLDLFIKDNGWLTIKDTNGQEAYTKNGHLKINSKRKL-TVQNNEVIGnngNIIIPK-NINLKISSNGVI 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 158 TATVGGETEPVE--VGQITLVNFINPAGLEAIGGNLY--RETAASGEAVEGVPGEEAFgQLEQGALEGSNVQVVEEMVDM 233
Cdd:PRK12641 142 TSIKNNHKHIVEtkIGSLKLVQLPSQDLIQKENGLFYlkKNNEINKKHTKNIKHSSKI-RVQSGMLEESNVNASKNMIEM 220
|
250 260
....*....|....*....|....*.
gi 908255196 234 ITVQRAYEMNAKMVSAADDMLKFVSQ 259
Cdd:PRK12641 221 ISNARQFEMQMKIISMCDQNTEYANQ 246
|
|
| flgE_epsilon |
TIGR02489 |
flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar ... |
1-133 |
8.13e-18 |
|
flagellar hook protein FlgE, epsilon proteobacterial; Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the Proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.
Pssm-ID: 131542 [Multi-domain] Cd Length: 719 Bit Score: 82.69 E-value: 8.13e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 1 MNSALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNQRTPGAPLD----QNNttpsgIQFGSGVQIVG 76
Cdd:TIGR02489 1 MLRSLWSGVSGMQAHQVALDVEGNNIANVNTTGFKYSRADFGDMLSQTVKIATSPYDglggQND-----LSIGLGVSISS 75
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 908255196 77 TQKQFTVGNIKVTKGDMDVAITGQGFFQIeTADGGI--AYTRAGNLTTNADGVLVNAQG 133
Cdd:TIGR02489 76 TTKIFSQGSVQTTNSKTDVAINGDGFFIV-SDDGGLtnYYTRDGAFKFDAYGNFVNNSG 133
|
|
| flgE |
PRK08425 |
flagellar hook protein FlgE; Validated |
170-254 |
2.67e-16 |
|
flagellar hook protein FlgE; Validated
Pssm-ID: 236263 [Multi-domain] Cd Length: 731 Bit Score: 78.20 E-value: 2.67e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 170 VGQITLVNFINPAGLEAIGGNLYRETAASGEAVEGVPGEEAFGQLEQGALEGSNVQVVEEMVDMITVQRAYEMNAKMVSA 249
Cdd:PRK08425 639 LAQVALANFANNAGLQAEGGNVFSQTANSGQAVIGAAGTGGRGSISGSKLEMSNVDLSRSLTQLIVIQRGFQANSKTITT 718
|
....*
gi 908255196 250 ADDML 254
Cdd:PRK08425 719 SDQML 723
|
|
| flgE |
PRK12637 |
flagellar hook protein FlgE; Provisional |
149-255 |
4.49e-15 |
|
flagellar hook protein FlgE; Provisional
Pssm-ID: 183641 [Multi-domain] Cd Length: 473 Bit Score: 74.41 E-value: 4.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 149 LHIGKDGTVTAT-VGGETEpvEVGQITLVNFINPAGLEAIGGNLYRETAASGEAVEGVPGEEAFGQLEQGALEGSNVQVV 227
Cdd:PRK12637 362 LSVGKDGSLVAKyTNGETQ--TIGTLVLANFNNVQGLQPVGNNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMS 439
|
90 100
....*....|....*....|....*...
gi 908255196 228 EEMVDMITVQRAYEMNAKMVSAADDMLK 255
Cdd:PRK12637 440 RELVNMIVAQRTYQANAQTIKTQDEVMQ 467
|
|
| flgE |
PRK05841 |
flagellar hook protein FlgE; Validated |
151-255 |
4.74e-13 |
|
flagellar hook protein FlgE; Validated
Pssm-ID: 235620 [Multi-domain] Cd Length: 603 Bit Score: 68.33 E-value: 4.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 151 IGKDGTVTATV-GGETEPVevGQITLVNFINPAGLEAIGGNLY--RETAASGEAV--EGVP-------GEEAFGQLEQGA 218
Cdd:PRK05841 482 IDENGVISLAFsNGVVEPM--GRIGIAAFTNDQGLRKVGGNLFemQEGTINGENRplSGNPilgwdeeGKLKFGKVRHKY 559
|
90 100 110
....*....|....*....|....*....|....*..
gi 908255196 219 LEGSNVQVVEEMVDMITVQRAYEMNAKMVSAADDMLK 255
Cdd:PRK05841 560 LETSNVDAGNALTNLILMQRGYSMNARAFGTGDDLIK 596
|
|
| flgE |
PRK12637 |
flagellar hook protein FlgE; Provisional |
10-136 |
1.34e-12 |
|
flagellar hook protein FlgE; Provisional
Pssm-ID: 183641 [Multi-domain] Cd Length: 473 Bit Score: 67.09 E-value: 1.34e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 10 TGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNQrtpgapldqnnttpsgiqFGSGVQIVGTQKQFTVGNIKVT 89
Cdd:PRK12637 8 SGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSR------------------VGLGVKVSAINQRFTVGNISTT 69
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 908255196 90 KGDMDVAITG-QGFFQIETADGGIAYTRAGNLTTNADGVLVNAQGMPL 136
Cdd:PRK12637 70 GGEYDMAIDGgKGFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFRL 117
|
|
| flgE |
PRK05841 |
flagellar hook protein FlgE; Validated |
1-133 |
1.44e-10 |
|
flagellar hook protein FlgE; Validated
Pssm-ID: 235620 [Multi-domain] Cd Length: 603 Bit Score: 61.01 E-value: 1.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 1 MNSALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNqrtpgapLDQ-NNTTPSGIQFGSGVQIVGTQK 79
Cdd:PRK05841 1 MNDTLLNAYSGIKTHQFGLDSLSNNIANVNTLGYRSNIPEFKTLFSSH-------LDAlNAKSVVANDRNYGVTGSSNAI 73
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 908255196 80 QFTVGNIKVTKGDMDVAITGQGFFQI--------ETADGGIA------YTRAGNLTTNADGVLVNAQG 133
Cdd:PRK05841 74 SNKDGEYKPSDGEFHMAYQGKGWFVVgpnkngsmTINKDGFSkkqdnyFTRDGSFARDADGYLVNPEG 141
|
|
| FlgC |
COG1558 |
Flagellar basal body rod protein FlgC [Cell motility]; |
215-254 |
4.80e-09 |
|
Flagellar basal body rod protein FlgC [Cell motility];
Pssm-ID: 441166 [Multi-domain] Cd Length: 135 Bit Score: 53.58 E-value: 4.80e-09
10 20 30 40
....*....|....*....|....*....|....*....|
gi 908255196 215 EQGALEGSNVQVVEEMVDMITVQRAYEMNAKMVSAADDML 254
Cdd:COG1558 88 ADGYVRYPNVNVVEEMVDMISASRSYEANVEVINTAKSML 127
|
|
| flgF |
PRK12643 |
flagellar basal body rod protein FlgF; Reviewed |
1-224 |
6.54e-09 |
|
flagellar basal body rod protein FlgF; Reviewed
Pssm-ID: 139117 [Multi-domain] Cd Length: 209 Bit Score: 54.47 E-value: 6.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 1 MNSALWVSkTGLAAQDAKMGAIS-NNLANVNTDGFKRdrvvfadlfyQNQRTPGAPLDQNNTTPSGIQFGS--GVQIvgt 77
Cdd:PRK12643 1 MDHAIYTA-MGAARQSLELQAVTaNNLANASTPGFRA----------QLAAMRAVPIDGPSLATRTMVTTStpGVDI--- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 78 qkqfTVGNIKVTKGDMDVAITGQGFFQIETADGGIAYTRAGNLTTNADGVLvNAQGMPLIPQ---IELPTGSKqLHIGKD 154
Cdd:PRK12643 67 ----SQGTMNFSGRPLDVALQQDGYLAVQLPDGSEAYTRNGNIQISANGQM-TVQGYPLMGDngpIDVPPQAA-VTIAAD 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 908255196 155 GTVTATVGGETePVEVGQITLVNFINPAGLEAIGGN--LYRETAASGEAVEG-VPGEEAfgqLEQGALEGSNV 224
Cdd:PRK12643 141 GTISALNAGDS-PNTIAQLGQIKRVQATAGEMMHGDdgLFHLTPETQQARGAqLPNDPL---VKPGEREHQWL 209
|
|
| flgC |
PRK05681 |
flagellar basal body rod protein FlgC; Reviewed |
215-254 |
3.32e-08 |
|
flagellar basal body rod protein FlgC; Reviewed
Pssm-ID: 235556 [Multi-domain] Cd Length: 135 Bit Score: 50.98 E-value: 3.32e-08
10 20 30 40
....*....|....*....|....*....|....*....|
gi 908255196 215 EQGALEGSNVQVVEEMVDMITVQRAYEMNAKMVSAADDML 254
Cdd:PRK05681 87 AKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMM 126
|
|
| flgG |
PRK12819 |
flagellar basal-body rod protein FlgG; |
23-251 |
1.60e-07 |
|
flagellar basal-body rod protein FlgG;
Pssm-ID: 183769 [Multi-domain] Cd Length: 257 Bit Score: 51.03 E-value: 1.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 23 SNNLANVNTDGFKRDRV---VFA--DLFYQNQrtpgapldqnnttPSGIQFGS---GVQIVGTQKQFTVGNIKVTKGD-- 92
Cdd:PRK12819 22 SNNVANAQTTGFKAENMtskVFDvqDTYRRGD-------------GAVTNIGSvdyAVVPAATHVNLVQGNIQMTNSDtd 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 93 --MDVAITGQGFFQIETADGGIAYTRAGNLTTNADGVLVNAQGMPLI----PQIELPTGSK--------------QLHIG 152
Cdd:PRK12819 89 ffLDDGPAGTSSFFVTSKNGETFLTRDGSFTLNSDRYLQTASGAFVMgennERIRIPEGAKvavqadgtlydavtQNNIA 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 153 KDGTVTATVGGETEPVEVGQITL-VNFINPAGLEAiggnlyretaasgeavegvpgeeAFGQLEQGALEGSNVQVVEEMV 231
Cdd:PRK12819 169 RLQTKTVSAEQNDRLVQRENKSFtLAEGNIANLPN-----------------------GQGIVKNGMLENSNVDMTKEMA 225
|
250 260
....*....|....*....|
gi 908255196 232 DMITVQRAYEMNAKMVSAAD 251
Cdd:PRK12819 226 DLMTDQRMIQASQRVMTSFD 245
|
|
| FlgC |
TIGR01395 |
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components ... |
215-254 |
2.81e-07 |
|
flagellar basal-body rod protein FlgC; This model represents FlgC, one of several components of bacterial flagella that share a domain described by pfam00460. FlgC is part of the basal body. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 130462 [Multi-domain] Cd Length: 135 Bit Score: 48.51 E-value: 2.81e-07
10 20 30 40
....*....|....*....|....*....|....*....|
gi 908255196 215 EQGALEGSNVQVVEEMVDMITVQRAYEMNAKMVSAADDML 254
Cdd:TIGR01395 88 AEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAKSMF 127
|
|
| FlgK |
COG1256 |
Flagellar hook-associated protein FlgK [Cell motility]; |
1-78 |
5.27e-06 |
|
Flagellar hook-associated protein FlgK [Cell motility];
Pssm-ID: 440868 [Multi-domain] Cd Length: 479 Bit Score: 47.18 E-value: 5.27e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 908255196 1 MNSALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNQrtpgapldqnnttpSGIQFGSGVQIVGTQ 78
Cdd:COG1256 2 LFSALNIALSGLNAAQRALDVTSHNIANANTPGYSRQRVVLSAAGPTAT--------------GAGQVGTGVRVTGIR 65
|
|
| flgB |
PRK12623 |
flagellar basal body rod protein FlgB; Provisional |
9-43 |
5.74e-06 |
|
flagellar basal body rod protein FlgB; Provisional
Pssm-ID: 183630 Cd Length: 131 Bit Score: 44.78 E-value: 5.74e-06
10 20 30
....*....|....*....|....*....|....*
gi 908255196 9 KTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFAD 43
Cdd:PRK12623 17 KKGLDASSYRGKVISNNIANVNTKGYKRHYVTFEE 51
|
|
| flgC |
PRK12631 |
flagellar basal body rod protein FlgC; Provisional |
223-255 |
1.75e-05 |
|
flagellar basal body rod protein FlgC; Provisional
Pssm-ID: 183636 Cd Length: 138 Bit Score: 43.41 E-value: 1.75e-05
10 20 30
....*....|....*....|....*....|...
gi 908255196 223 NVQVVEEMVDMITVQRAYEMNAKMVSAADDMLK 255
Cdd:PRK12631 99 NVNVMEEMADMISASRSYQMNVQVAEAAKSMLQ 131
|
|
| FlgK |
COG1256 |
Flagellar hook-associated protein FlgK [Cell motility]; |
228-254 |
1.96e-05 |
|
Flagellar hook-associated protein FlgK [Cell motility];
Pssm-ID: 440868 [Multi-domain] Cd Length: 479 Bit Score: 45.25 E-value: 1.96e-05
10 20
....*....|....*....|....*..
gi 908255196 228 EEMVDMITVQRAYEMNAKMVSAADDML 254
Cdd:COG1256 445 EEMANLIKFQQAYQANARVITTADEML 471
|
|
| flgK |
PRK07739 |
flagellar hook-associated protein FlgK; Validated |
8-79 |
2.18e-05 |
|
flagellar hook-associated protein FlgK; Validated
Pssm-ID: 236084 [Multi-domain] Cd Length: 507 Bit Score: 45.39 E-value: 2.18e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 908255196 8 SKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFAdlfyqnqRTPGAPLDQNNTTPSGIQFGSGVQIVGTQK 79
Cdd:PRK07739 11 ARRGLFAQQAALYVTGHNIANANTPGYTRQRVNLA-------ATPPYPTPGMNRPKIPGQMGTGVEAGSVER 75
|
|
| FlgB |
COG1815 |
Flagellar basal body rod protein FlgB [Cell motility]; |
1-71 |
3.36e-05 |
|
Flagellar basal body rod protein FlgB [Cell motility];
Pssm-ID: 441420 Cd Length: 135 Bit Score: 42.59 E-value: 3.36e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 908255196 1 MNSALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNQRTPGAPLDQNNTTPSGIQFGSG 71
Cdd:COG1815 5 FDKTFGLLEKALDLRSLRQEVIASNIANADTPGYKARDVDFEAALKAALGGGSAGLALATTNPRHIPGSAG 75
|
|
| flgK |
PRK08147 |
flagellar hook-associated protein FlgK; Validated |
1-81 |
3.83e-05 |
|
flagellar hook-associated protein FlgK; Validated
Pssm-ID: 236165 [Multi-domain] Cd Length: 547 Bit Score: 44.67 E-value: 3.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 1 MNSALwvskTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFAdlfyqnqrtpgapldQNNTTPSGIQF-GSGVQIVGTQK 79
Cdd:PRK08147 5 INTAM----SGLNAAQAALNTVSNNISNYNVAGYTRQTTILA---------------QAGSTLTAGGWiGNGVYVSGVQR 65
|
..
gi 908255196 80 QF 81
Cdd:PRK08147 66 EY 67
|
|
| flgC |
PRK05681 |
flagellar basal body rod protein FlgC; Reviewed |
1-53 |
8.16e-05 |
|
flagellar basal body rod protein FlgC; Reviewed
Pssm-ID: 235556 [Multi-domain] Cd Length: 135 Bit Score: 41.35 E-value: 8.16e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 908255196 1 MNSALWVSKTGLAAQDAKMGAISNNLANVNT------DGFKRDRVVFADLFYQNQRTPG 53
Cdd:PRK05681 3 LFSSFNIAGSGLSAQSQRLNVISSNIANADStaapdgDPYRRKQVVFAAELDPGQGTGG 61
|
|
| FlgB |
TIGR01396 |
flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components ... |
12-95 |
1.67e-04 |
|
flagellar basal-body rod protein FlgB; This model represents FlgB, one of several components of bacterial flagella that share a domain described by pfam00460. FlgB is part of the basal body. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 273598 [Multi-domain] Cd Length: 131 Bit Score: 40.45 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 12 LAAQDAKMgaISNNLANVNTDGFKRDRVVFADLF---YQNQRTPGAPLDQNNTTPSGIQfGSGVQIVGTQKQFTVGNIKV 88
Cdd:TIGR01396 14 VRSLRQEV--IANNIANVDTPGYKAKDVSFEAELkkaLDNERNSKLTLARTDTRPRHLN-AQDSNSVEPSLQYDYTTQVK 90
|
90
....*....|
gi 908255196 89 TKG---DMDV 95
Cdd:TIGR01396 91 NDGnnvDIDQ 100
|
|
| flgC |
PRK12632 |
flagellar basal body rod protein FlgC; Provisional |
3-63 |
2.77e-04 |
|
flagellar basal body rod protein FlgC; Provisional
Pssm-ID: 183637 [Multi-domain] Cd Length: 130 Bit Score: 39.79 E-value: 2.77e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 908255196 3 SALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFadlfyQNQRTPGAPLDQNNTTP 63
Cdd:PRK12632 6 KSLSVSASGMRAQALRLRHVSENIANADTPGYRRKTVSF-----QEARDFDPGSGLVSTGP 61
|
|
| Flg_bb_rod |
pfam00460 |
Flagella basal body rod protein; |
5-34 |
6.06e-04 |
|
Flagella basal body rod protein;
Pssm-ID: 459821 [Multi-domain] Cd Length: 30 Bit Score: 36.39 E-value: 6.06e-04
10 20 30
....*....|....*....|....*....|
gi 908255196 5 LWVSKTGLAAQDAKMGAISNNLANVNTDGF 34
Cdd:pfam00460 1 LYTAVSALNAQQIRLDVIANNIANANTPGY 30
|
|
| flgK |
PRK07739 |
flagellar hook-associated protein FlgK; Validated |
213-254 |
7.43e-04 |
|
flagellar hook-associated protein FlgK; Validated
Pssm-ID: 236084 [Multi-domain] Cd Length: 507 Bit Score: 40.38 E-value: 7.43e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 908255196 213 QLEQGALEGSNVQVVEEMVDMITVQRAYEMNAKMVSAADDML 254
Cdd:PRK07739 454 QVDNRRQSVSGVSLDEEMTNMIKFQHAYNAAARMITAIDEML 495
|
|
| flgK_ends |
TIGR02492 |
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of ... |
3-80 |
2.31e-03 |
|
flagellar hook-associated protein FlgK; The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274162 [Multi-domain] Cd Length: 323 Bit Score: 38.87 E-value: 2.31e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 908255196 3 SALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFadlfyqnqrTPGAPLDQNnttpsGIQFGSGVQIVGTQKQ 80
Cdd:TIGR02492 1 SLLNIAKSGLSASQIALSVTSNNIANANTPGYSRQRAVL---------TAVPAGGQG-----GKQIGTGVKVTSIRRI 64
|
|
| flgC |
PRK12632 |
flagellar basal body rod protein FlgC; Provisional |
215-253 |
2.42e-03 |
|
flagellar basal body rod protein FlgC; Provisional
Pssm-ID: 183637 [Multi-domain] Cd Length: 130 Bit Score: 37.09 E-value: 2.42e-03
10 20 30
....*....|....*....|....*....|....*....
gi 908255196 215 EQGALEGSNVQVVEEMVDMITVQRAYEMNAKMVSAADDM 253
Cdd:PRK12632 82 ETGYYDGSNVDLVVEIADAREAQRSYEANLRMFDQARQM 120
|
|
| flgK |
PRK06945 |
flagellar hook-associated protein FlgK; Validated |
1-81 |
4.87e-03 |
|
flagellar hook-associated protein FlgK; Validated
Pssm-ID: 235895 [Multi-domain] Cd Length: 651 Bit Score: 38.07 E-value: 4.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 908255196 1 MNSALWVSKTGLAAQDAKMGAISNNLANVNTDGFKRDRVVFADLFYQNqrtpgapldqnntTPSGIqFGSGVQIVGTQKQ 80
Cdd:PRK06945 1 SSSLLNIGLSGLNAAQWGLTTTGHNISNAATPGYSRQRVVQAEAGGQY-------------TGSGY-LGQGVNVVTVKRQ 66
|
.
gi 908255196 81 F 81
Cdd:PRK06945 67 Y 67
|
|
| |
