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Conserved domains on  [gi|595638360|gb|AHM70617|]
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transposase [Staphylococcus aureus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
transpos_IS1182 super family cl41317
IS1182 family transposase; Members of this family are transposases of the IS1182 family. ...
 1-84 4.44e-28

IS1182 family transposase; Members of this family are transposases of the IS1182 family. About two-thirds of the members of this family have an extra domain between the middle and the C-terminal domain, about 50 amino acids in size and containing four invariant Cys residues.


The actual alignment was detected with superfamily member NF033551:

Pssm-ID: 468080 [Multi-domain]  Cd Length: 437  Bit Score: 104.33  E-value: 4.44e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595638360   1 MMLKIILYAYTQSVFSGRRIEKLLHDSIRMMWLAQ----DQTPSYKTINRFRVNPNTDALIESLFIQFHSQCLKQNLIDN 76
Cdd:NF033551  57 LMLKLLLYGYLEGIRSDRQLERELRENLAYRWLLGlgltDPVPDHSTLSRFRRRLKDTDLLERLFDQVVELAREAGLVGG 136


                 ....*...
gi 595638360  77 NSIFIDGT 84
Cdd:NF033551 137 KRVAIDGT 144
 
Name Accession Description Interval E-value
transpos_IS1182 NF033551
IS1182 family transposase; Members of this family are transposases of the IS1182 family. ...
 1-84 4.44e-28

IS1182 family transposase; Members of this family are transposases of the IS1182 family. About two-thirds of the members of this family have an extra domain between the middle and the C-terminal domain, about 50 amino acids in size and containing four invariant Cys residues.


Pssm-ID: 468080 [Multi-domain]  Cd Length: 437  Bit Score: 104.33  E-value: 4.44e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595638360   1 MMLKIILYAYTQSVFSGRRIEKLLHDSIRMMWLAQ----DQTPSYKTINRFRVNPNTDALIESLFIQFHSQCLKQNLIDN 76
Cdd:NF033551  57 LMLKLLLYGYLEGIRSDRQLERELRENLAYRWLLGlgltDPVPDHSTLSRFRRRLKDTDLLERLFDQVVELAREAGLVGG 136


                 ....*...
gi 595638360  77 NSIFIDGT 84
Cdd:NF033551 137 KRVAIDGT 144
COG3666 COG3666
Transposase, IS1182 family [Mobilome: prophages, transposons];
1-84 3.30e-26

Transposase, IS1182 family [Mobilome: prophages, transposons];


Pssm-ID: 442883 [Multi-domain]  Cd Length: 169  Bit Score: 94.19  E-value: 3.30e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595638360   1 MMLKIILYAYTQSVFSGRRIEKLLHDSIRMMWLAQ----DQTPSYKTINRFR-VNPNTDAlIESLFIQFHSQCLKQNLID 75
Cdd:COG3666   63 MLLKLLLYGYLEGIRSSRQLEEACRYNLAFRWLLGleldDPVPDHSTISRFRkRLLKSDV-LEKLFAQVVLQAREEGLIS 141


                 ....*....
gi 595638360  76 NNSIFIDGT 84
Cdd:COG3666  142 GEHVAIDGT 150
DUF772 pfam05598
Transposase domain (DUF772); This presumed domain is found at the N-terminus of many proteins ...
 1-48 4.56e-13

Transposase domain (DUF772); This presumed domain is found at the N-terminus of many proteins found in transposons.


Pssm-ID: 461687 [Multi-domain]  Cd Length: 71  Bit Score: 57.89  E-value: 4.56e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 595638360   1 MMLKIILYAYTQSVFSGRRIEKLLHDSIRMMWLA-----QDQTPSYKTINRFR 48
Cdd:pfam05598  9 MMLKALLLQYLYGLRSDRQLEEALRDNLSFRWFLgldldDDPVPDHSTLSRFR 61
 
Name Accession Description Interval E-value
transpos_IS1182 NF033551
IS1182 family transposase; Members of this family are transposases of the IS1182 family. ...
 1-84 4.44e-28

IS1182 family transposase; Members of this family are transposases of the IS1182 family. About two-thirds of the members of this family have an extra domain between the middle and the C-terminal domain, about 50 amino acids in size and containing four invariant Cys residues.


Pssm-ID: 468080 [Multi-domain]  Cd Length: 437  Bit Score: 104.33  E-value: 4.44e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595638360   1 MMLKIILYAYTQSVFSGRRIEKLLHDSIRMMWLAQ----DQTPSYKTINRFRVNPNTDALIESLFIQFHSQCLKQNLIDN 76
Cdd:NF033551  57 LMLKLLLYGYLEGIRSDRQLERELRENLAYRWLLGlgltDPVPDHSTLSRFRRRLKDTDLLERLFDQVVELAREAGLVGG 136


                 ....*...
gi 595638360  77 NSIFIDGT 84
Cdd:NF033551 137 KRVAIDGT 144
COG3666 COG3666
Transposase, IS1182 family [Mobilome: prophages, transposons];
1-84 3.30e-26

Transposase, IS1182 family [Mobilome: prophages, transposons];


Pssm-ID: 442883 [Multi-domain]  Cd Length: 169  Bit Score: 94.19  E-value: 3.30e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595638360   1 MMLKIILYAYTQSVFSGRRIEKLLHDSIRMMWLAQ----DQTPSYKTINRFR-VNPNTDAlIESLFIQFHSQCLKQNLID 75
Cdd:COG3666   63 MLLKLLLYGYLEGIRSSRQLEEACRYNLAFRWLLGleldDPVPDHSTISRFRkRLLKSDV-LEKLFAQVVLQAREEGLIS 141


                 ....*....
gi 595638360  76 NNSIFIDGT 84
Cdd:COG3666  142 GEHVAIDGT 150
DUF772 pfam05598
Transposase domain (DUF772); This presumed domain is found at the N-terminus of many proteins ...
 1-48 4.56e-13

Transposase domain (DUF772); This presumed domain is found at the N-terminus of many proteins found in transposons.


Pssm-ID: 461687 [Multi-domain]  Cd Length: 71  Bit Score: 57.89  E-value: 4.56e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 595638360   1 MMLKIILYAYTQSVFSGRRIEKLLHDSIRMMWLA-----QDQTPSYKTINRFR 48
Cdd:pfam05598  9 MMLKALLLQYLYGLRSDRQLEEALRDNLSFRWFLgldldDDPVPDHSTLSRFR 61
IS5 COG3039
Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons];
1-84 5.33e-03

Transposase and inactivated derivatives, IS5 family [Mobilome: prophages, transposons];


Pssm-ID: 442273 [Multi-domain]  Cd Length: 316  Bit Score: 33.69  E-value: 5.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595638360   1 MMLKIILyayTQSVF--SGRRIEKLLHDSIRMMWLA----QDQTPSYKTINRFRVNPNTDALIESLFIQFHSQCLKQNLI 74
Cdd:COG3039   59 RMLRILF---LQQWYnlSDPAMEDALYDRLSFRRFAgldlSDRVPDETTILRFRHLLEEHGLGEALFEEVNAQLSEKGLI 135

                         90
                 ....*....|
gi 595638360  75 DNNSIFIDGT 84
Cdd:COG3039  136 LRKGTIVDAT 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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