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Conserved domains on  [gi|523430829|gb|AGQ42765|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Epigonichthys cultellus]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009628)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-164 1.07e-28

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214461  Cd Length: 168  Bit Score: 103.92  E-value: 1.07e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523430829   1 MLQMFLIFCILLTSVMIIRSTTPYFGALATAGMALTSALLLLECGKTFPAMILMLIYLGGMLVVFIYSTAYSADLMPLPI 80
Cdd:MTH00214   3 YFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPESW 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523430829  81 ---NMTTAIMTATLGTAVITSLSPNMVeylcENKPWESYNSNNNY---MIFDLYERGWGTFVIATMILTVLLFAILEIVS 154
Cdd:MTH00214  83 ggwSVLLFFLFYLLGLGFVGFYFYGGW----EMLSWMGVDEANNLdlsGVSDLYSRGFFLLLLGGVVLFLVLFVVLELVR 158

                        170
                 ....*....|
gi 523430829 155 QRQSTMKWYV 164
Cdd:MTH00214 159 GLSRGALRVV 168
 
Name Accession Description Interval E-value
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-164 1.07e-28

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 103.92  E-value: 1.07e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523430829   1 MLQMFLIFCILLTSVMIIRSTTPYFGALATAGMALTSALLLLECGKTFPAMILMLIYLGGMLVVFIYSTAYSADLMPLPI 80
Cdd:MTH00214   3 YFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPESW 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523430829  81 ---NMTTAIMTATLGTAVITSLSPNMVeylcENKPWESYNSNNNY---MIFDLYERGWGTFVIATMILTVLLFAILEIVS 154
Cdd:MTH00214  83 ggwSVLLFFLFYLLGLGFVGFYFYGGW----EMLSWMGVDEANNLdlsGVSDLYSRGFFLLLLGGVVLFLVLFVVLELVR 158

                        170
                 ....*....|
gi 523430829 155 QRQSTMKWYV 164
Cdd:MTH00214 159 GLSRGALRVV 168
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
15-152 1.83e-06

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 45.19  E-value: 1.83e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523430829   15 VMIIRSTTPYFGALATAGMALTSALLLLECGKTFPAMILMLIYLGGMLVVFIYSTAYSADLMPLPINMTTAIMTATLGTA 94
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 523430829   95 VITSLSPNMVEYLCENKPWESYNSNNNYMI---FDLYERGWGTFVIATMILTVLLFAILEI 152
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEaigELLFTDYLLPFELASVLLLVALVGAIVL 141
 
Name Accession Description Interval E-value
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-164 1.07e-28

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 103.92  E-value: 1.07e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523430829   1 MLQMFLIFCILLTSVMIIRSTTPYFGALATAGMALTSALLLLECGKTFPAMILMLIYLGGMLVVFIYSTAYSADLMPLPI 80
Cdd:MTH00214   3 YFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPESW 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523430829  81 ---NMTTAIMTATLGTAVITSLSPNMVeylcENKPWESYNSNNNY---MIFDLYERGWGTFVIATMILTVLLFAILEIVS 154
Cdd:MTH00214  83 ggwSVLLFFLFYLLGLGFVGFYFYGGW----EMLSWMGVDEANNLdlsGVSDLYSRGFFLLLLGGVVLFLVLFVVLELVR 158

                        170
                 ....*....|
gi 523430829 155 QRQSTMKWYV 164
Cdd:MTH00214 159 GLSRGALRVV 168
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 1-152 2.03e-16

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 71.86  E-value: 2.03e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523430829   1 MLQMFLIFCILLTSVMIIRSTTPYFGALATAGMALTSALLLLECGKTFPAMILMLIYLGGMLVVFIYSTAYSADLMPLPI 80
Cdd:MTH00045   1 MVFYLFLILMLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPSVS 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 523430829  81 NMTTAIMTATLGTAVITSLSPNMVEylCENKPWESYNSNNNYMIFDLYERGWGTFVIATMILTVLLFAILEI 152
Cdd:MTH00045  81 NLGEVLVLSLLLSLWVFISFDNFLE--LSNNNWSLVSLSDLVGSSELYNSGGLYLLLGGFILLVALVVALVI 150
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 4-77 3.43e-15

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 69.01  E-value: 3.43e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 523430829   4 MFLIFCILLTSVMIIRST-TPYFGALATAGMALTSALLLLECGKTFPAMILMLIYLGGMLVVFIYSTAYSADLMP 77
Cdd:MTH00115   5 VFLLGVCFVLGVVGVASNpSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYP 79
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 4-77 6.17e-13

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 62.85  E-value: 6.17e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 523430829   4 MFLIFCILLTSVMIIRSTTPYFGALATAGMALTSALLLLECGKTFPAMILMLIYLGGMLVVFIYSTAYSADLMP 77
Cdd:MTH00138   6 SLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYP 79
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 2-77 8.47e-10

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 54.47  E-value: 8.47e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 523430829   2 LQMFLIFCILLTSVMIIRSTTPYFGALATAGMALTSALLLLECGKTFPAMILMLIYLGGMLVVFIYSTAYSADLMP 77
Cdd:MTH00065   4 LGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYP 79
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
15-152 1.83e-06

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 45.19  E-value: 1.83e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 523430829   15 VMIIRSTTPYFGALATAGMALTSALLLLECGKTFPAMILMLIYLGGMLVVFIYSTAYSADLMPLPINMTTAIMTATLGTA 94
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 523430829   95 VITSLSPNMVEYLCENKPWESYNSNNNYMI---FDLYERGWGTFVIATMILTVLLFAILEI 152
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEaigELLFTDYLLPFELASVLLLVALVGAIVL 141
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 42-77 6.23e-04

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 38.24  E-value: 6.23e-04
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 523430829  42 LECGKTFPAMILMLIYLGGMLVVFIYSTAYSADLMP 77
Cdd:MTH00109  45 LSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYP 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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