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Conserved domains on  [gi|440213964|gb|AGB93139|]
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sickie, isoform G [Drosophila melanogaster]

Protein Classification

ATP-binding protein( domain architecture ID 10598562)

ATP-binding protein with an AAA (ATPases Associated with various cellular Activities) domain similar to Nostoc sp. Tn7 transposition protein TnsC

CATH:  3.40.50.300
Gene Ontology:  GO:0005524|GO:0016887
PubMed:  15037234|18208389|17897320|18466635|16072036|11916378|15037233
SCOP:  2000039

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
McrB super family cl34253
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ...
 1007-1236 2.81e-07

5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];


The actual alignment was detected with superfamily member COG1401:

Pssm-ID: 441011 [Multi-domain]  Cd Length: 477  Bit Score: 54.78  E-value: 2.81e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964 1007 PRSIVHRYISLLTEHRRLILCGPSGTGKSYLARRLAEFLvarSARGNPSEAIATFNVDHKSSKDLRQYL----------- 1075
Cdd:COG1401   207 FEETLEAFLAALKTKKNVILAGPPGTGKTYLARRLAEAL---GGEDNGRIEFVQFHPSWSYEDFLLGYRpsldegkyept 283

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964 1076 -GHIAEQAAIANGVSELPSVIILD--NLHHAS-ALGDVFScLLSAG----------PANKLPC---------IIGTMsqa 1132
Cdd:COG1401   284 pGIFLRFCLKAEKNPDKPYVLIIDeiNRANVEkYFGELLS-LLESDkrgeelsielPYSGEGEefsippnlyIIGTM--- 359

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964 1133 tcNT--TNLqlhhnfrwvltanhmepvkGFLGRFLRRRlFQLEL----QTQHPQPELAAVLawlpsvwQHINRFLEvhsS 1206
Cdd:COG1401   360 --NTddRSL-------------------ALSDKALRRR-FTFEFldpdLDKLSNEEVVDLL-------EELNEILE---K 407

                         250       260       270
                  ....*....|....*....|....*....|
gi 440213964 1207 SDVTIGPRLFLACPMDLKDSQVWFTDIWNY 1236
Cdd:COG1401   408 RDFQIGHRALLLLDGLLSGDLDLLLLLLLL 437
 
Name Accession Description Interval E-value
McrB COG1401
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ...
 1007-1236 2.81e-07

5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];


Pssm-ID: 441011 [Multi-domain]  Cd Length: 477  Bit Score: 54.78  E-value: 2.81e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964 1007 PRSIVHRYISLLTEHRRLILCGPSGTGKSYLARRLAEFLvarSARGNPSEAIATFNVDHKSSKDLRQYL----------- 1075
Cdd:COG1401   207 FEETLEAFLAALKTKKNVILAGPPGTGKTYLARRLAEAL---GGEDNGRIEFVQFHPSWSYEDFLLGYRpsldegkyept 283

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964 1076 -GHIAEQAAIANGVSELPSVIILD--NLHHAS-ALGDVFScLLSAG----------PANKLPC---------IIGTMsqa 1132
Cdd:COG1401   284 pGIFLRFCLKAEKNPDKPYVLIIDeiNRANVEkYFGELLS-LLESDkrgeelsielPYSGEGEefsippnlyIIGTM--- 359

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964 1133 tcNT--TNLqlhhnfrwvltanhmepvkGFLGRFLRRRlFQLEL----QTQHPQPELAAVLawlpsvwQHINRFLEvhsS 1206
Cdd:COG1401   360 --NTddRSL-------------------ALSDKALRRR-FTFEFldpdLDKLSNEEVVDLL-------EELNEILE---K 407

                         250       260       270
                  ....*....|....*....|....*....|
gi 440213964 1207 SDVTIGPRLFLACPMDLKDSQVWFTDIWNY 1236
Cdd:COG1401   408 RDFQIGHRALLLLDGLLSGDLDLLLLLLLL 437
AAA_22 pfam13401
AAA domain;
1024-1115 5.03e-07

AAA domain;


Pssm-ID: 379165 [Multi-domain]  Cd Length: 129  Bit Score: 50.03  E-value: 5.03e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964  1024 LILCGPSGTGKSYLARRLAEFLVARSAR---------GNPSE---AIAT-FNVDHKSSKDLRQYLGHIAEQAAIANgvse 1090
Cdd:pfam13401    8 LVLTGESGTGKTTLLRRLLEQLPEVRDSvvfvdlpsgTSPKDllrALLRaLGLPLSGRLSKEELLAALQQLLLALA---- 83

                           90       100       110
                   ....*....|....*....|....*....|...
gi 440213964  1091 LPSVIILDNLHHASA--------LGDVFSCLLS 1115
Cdd:pfam13401   84 VAVVLIIDEAQHLSLealeelrdLLNLSSKLLQ 116
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 1021-1170 8.04e-07

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 50.06  E-value: 8.04e-07
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964   1021 HRRLILCGPSGTGKSYLARRLAEFLVARSAR-----GNPSEAIATFNVDHKSSKDLRQYLGHIAEQA-AIANGVSELPSV 1094
Cdd:smart00382    2 GEVILIVGPPGSGKTTLARALARELGPPGGGviyidGEDILEEVLDQLLLIIVGGKKASGSGELRLRlALALARKLKPDV 81

                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 440213964   1095 IILDNLHhaSALGDVFSCLLSAGPANKLpciigtmsqatcnTTNLQLHHNFRWVLTANH-MEPVKGFLGRFLRRRLF 1170
Cdd:smart00382   82 LILDEIT--SLLDAEQEALLLLLEELRL-------------LLLLKSEKNLTVILTTNDeKDLGPALLRRRFDRRIV 143
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 1024-1105 5.07e-06

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 47.91  E-value: 5.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964 1024 LILCGPSGTGKSYLARRLAEFLVARSARgnpseaIATFNV-DHKSSKDLRQYLGHIAEQAAIANGVSELPSVIILDNLHH 1102
Cdd:cd00009    22 LLLYGPPGTGKTTLARAIANELFRPGAP------FLYLNAsDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDS 95


                  ...
gi 440213964 1103 ASA 1105
Cdd:cd00009    96 LSR 98
PRK11331 PRK11331
5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
 1003-1050 2.08e-03

5-methylcytosine-specific restriction enzyme subunit McrB; Provisional


Pssm-ID: 183088 [Multi-domain]  Cd Length: 459  Bit Score: 42.38  E-value: 2.08e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 440213964 1003 DSLIPRSIVHRYISLLTEHRRLILCGPSGTGKSYLARRLAEFLVARSA 1050
Cdd:PRK11331  176 DLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKA 223
 
Name Accession Description Interval E-value
McrB COG1401
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ...
 1007-1236 2.81e-07

5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];


Pssm-ID: 441011 [Multi-domain]  Cd Length: 477  Bit Score: 54.78  E-value: 2.81e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964 1007 PRSIVHRYISLLTEHRRLILCGPSGTGKSYLARRLAEFLvarSARGNPSEAIATFNVDHKSSKDLRQYL----------- 1075
Cdd:COG1401   207 FEETLEAFLAALKTKKNVILAGPPGTGKTYLARRLAEAL---GGEDNGRIEFVQFHPSWSYEDFLLGYRpsldegkyept 283

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964 1076 -GHIAEQAAIANGVSELPSVIILD--NLHHAS-ALGDVFScLLSAG----------PANKLPC---------IIGTMsqa 1132
Cdd:COG1401   284 pGIFLRFCLKAEKNPDKPYVLIIDeiNRANVEkYFGELLS-LLESDkrgeelsielPYSGEGEefsippnlyIIGTM--- 359

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964 1133 tcNT--TNLqlhhnfrwvltanhmepvkGFLGRFLRRRlFQLEL----QTQHPQPELAAVLawlpsvwQHINRFLEvhsS 1206
Cdd:COG1401   360 --NTddRSL-------------------ALSDKALRRR-FTFEFldpdLDKLSNEEVVDLL-------EELNEILE---K 407

                         250       260       270
                  ....*....|....*....|....*....|
gi 440213964 1207 SDVTIGPRLFLACPMDLKDSQVWFTDIWNY 1236
Cdd:COG1401   408 RDFQIGHRALLLLDGLLSGDLDLLLLLLLL 437
AAA_22 pfam13401
AAA domain;
1024-1115 5.03e-07

AAA domain;


Pssm-ID: 379165 [Multi-domain]  Cd Length: 129  Bit Score: 50.03  E-value: 5.03e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964  1024 LILCGPSGTGKSYLARRLAEFLVARSAR---------GNPSE---AIAT-FNVDHKSSKDLRQYLGHIAEQAAIANgvse 1090
Cdd:pfam13401    8 LVLTGESGTGKTTLLRRLLEQLPEVRDSvvfvdlpsgTSPKDllrALLRaLGLPLSGRLSKEELLAALQQLLLALA---- 83

                           90       100       110
                   ....*....|....*....|....*....|...
gi 440213964  1091 LPSVIILDNLHHASA--------LGDVFSCLLS 1115
Cdd:pfam13401   84 VAVVLIIDEAQHLSLealeelrdLLNLSSKLLQ 116
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 1021-1170 8.04e-07

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 50.06  E-value: 8.04e-07
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964   1021 HRRLILCGPSGTGKSYLARRLAEFLVARSAR-----GNPSEAIATFNVDHKSSKDLRQYLGHIAEQA-AIANGVSELPSV 1094
Cdd:smart00382    2 GEVILIVGPPGSGKTTLARALARELGPPGGGviyidGEDILEEVLDQLLLIIVGGKKASGSGELRLRlALALARKLKPDV 81

                            90       100       110       120       130       140       150
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 440213964   1095 IILDNLHhaSALGDVFSCLLSAGPANKLpciigtmsqatcnTTNLQLHHNFRWVLTANH-MEPVKGFLGRFLRRRLF 1170
Cdd:smart00382   82 LILDEIT--SLLDAEQEALLLLLEELRL-------------LLLLKSEKNLTVILTTNDeKDLGPALLRRRFDRRIV 143
AAA pfam00004
ATPase family associated with various cellular activities (AAA); AAA family proteins often ...
 1024-1172 2.72e-06

ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.


Pssm-ID: 459627 [Multi-domain]  Cd Length: 130  Bit Score: 47.97  E-value: 2.72e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964  1024 LILCGPSGTGKSYLARRLAEFLVARSARGNPSEAIATFNVDhkSSKDLRQYLGHIAEQAaiangvselPSVIILDNLHHA 1103
Cdd:pfam00004    1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGE--SEKRLRELFEAAKKLA---------PCVIFIDEIDAL 69

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964  1104 SALGDVFSCLLSAGPANKLpciIGTMSQATCNTtnlqlhHNFRWVLTANHMEPV-KGFLGRFLRRRLFQL 1172
Cdd:pfam00004   70 AGSRGSGGDSESRRVVNQL---LTELDGFTSSN------SKVIVIAATNRPDKLdPALLGRFDRIIEFPL 130
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
 1024-1105 5.07e-06

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 47.91  E-value: 5.07e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964 1024 LILCGPSGTGKSYLARRLAEFLVARSARgnpseaIATFNV-DHKSSKDLRQYLGHIAEQAAIANGVSELPSVIILDNLHH 1102
Cdd:cd00009    22 LLLYGPPGTGKTTLARAIANELFRPGAP------FLYLNAsDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDS 95


                  ...
gi 440213964 1103 ASA 1105
Cdd:cd00009    96 LSR 98
RecA-like_protease cd19481
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ...
 1008-1047 6.60e-04

proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.


Pssm-ID: 410889 [Multi-domain]  Cd Length: 158  Bit Score: 41.88  E-value: 6.60e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 440213964 1008 RSIVHRYISLLteHRRLILCGPSGTGKSYLARRLAEFLVA 1047
Cdd:cd19481    15 GSRLRRYGLGL--PKGILLYGPPGTGKTLLAKALAGELGL 52
COG0645 COG0645
Predicted kinase, contains AAA domain [General function prediction only];
1024-1045 7.98e-04

Predicted kinase, contains AAA domain [General function prediction only];


Pssm-ID: 440410 [Multi-domain]  Cd Length: 164  Bit Score: 41.44  E-value: 7.98e-04
                          10        20
                  ....*....|....*....|..
gi 440213964 1024 LILCGPSGTGKSYLARRLAEFL 1045
Cdd:COG0645     2 ILVCGLPGSGKSTLARALAERL 23
PRK11331 PRK11331
5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
 1003-1050 2.08e-03

5-methylcytosine-specific restriction enzyme subunit McrB; Provisional


Pssm-ID: 183088 [Multi-domain]  Cd Length: 459  Bit Score: 42.38  E-value: 2.08e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 440213964 1003 DSLIPRSIVHRYISLLTEHRRLILCGPSGTGKSYLARRLAEFLVARSA 1050
Cdd:PRK11331  176 DLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKA 223
COG1223 COG1223
Predicted ATPase, AAA+ superfamily [General function prediction only];
1012-1107 2.35e-03

Predicted ATPase, AAA+ superfamily [General function prediction only];


Pssm-ID: 440836 [Multi-domain]  Cd Length: 246  Bit Score: 41.41  E-value: 2.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964 1012 HRYISLLTEH-----RRLILCGPSGTGKSYLARRLAE-----FLVARsargnPSEAIatfnvdhkSSkdlrqYLGHIAEQ 1081
Cdd:COG1223    21 LRRRENLRKFglwppRKILFYGPPGTGKTMLAEALAGelklpLLTVR-----LDSLI--------GS-----YLGETARN 82

                          90       100
                  ....*....|....*....|....*..
gi 440213964 1082 -AAIANGVSELPSVIILDNLHhasALG 1107
Cdd:COG1223    83 lRKLFDFARRAPCVIFFDEFD---AIA 106
AAA_33 pfam13671
AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the ...
 1024-1099 2.37e-03

AAA domain; This family of domains contain only a P-loop motif, that is characteriztic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.


Pssm-ID: 463952 [Multi-domain]  Cd Length: 143  Bit Score: 39.99  E-value: 2.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964  1024 LILCGPSGTGKSYLARRLAEFL---------VARSARGNPSEAIATFNvdhKSSKDLRQYLGHIAEQAAiANGVSelpsv 1094
Cdd:pfam13671    2 ILLVGLPGSGKSTLARRLLEELgavrlssddERKRLFGEGRPSISYYT---DATDRTYERLHELARIAL-RAGRP----- 72


                   ....*
gi 440213964  1095 IILDN 1099
Cdd:pfam13671   73 VILDA 77
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
 1025-1045 2.65e-03

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 42.38  E-value: 2.65e-03
                          10        20
                  ....*....|....*....|.
gi 440213964 1025 ILCGPSGTGKSYLARRLAEFL 1045
Cdd:COG0542   583 LFLGPTGVGKTELAKALAEFL 603
AAA_5 pfam07728
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ...
 1024-1049 3.47e-03

AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.


Pssm-ID: 400191 [Multi-domain]  Cd Length: 135  Bit Score: 39.20  E-value: 3.47e-03
                           10        20
                   ....*....|....*....|....*.
gi 440213964  1024 LILCGPSGTGKSYLARRLAEFLVARS 1049
Cdd:pfam07728    2 VLLVGPPGTGKTELAERLAAALSNRP 27
ABC_ATPase cd00267
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ...
 1022-1098 3.91e-03

ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213179 [Multi-domain]  Cd Length: 157  Bit Score: 39.54  E-value: 3.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 440213964 1022 RRLILCGPSGTGKSYLARRLAEFLvarsargNPSEAIATFNVDHKSSKDLRQYLGHIA--------EQ--AAIANGVSEL 1091
Cdd:cd00267    26 EIVALVGPNGSGKSTLLRAIAGLL-------KPTSGEILIDGKDIAKLPLEELRRRIGyvpqlsggQRqrVALARALLLN 98


                  ....*..
gi 440213964 1092 PSVIILD 1098
Cdd:cd00267    99 PDLLLLD 105
SpoVK COG0464
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ...
 1018-1043 4.69e-03

AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];


Pssm-ID: 440232 [Multi-domain]  Cd Length: 397  Bit Score: 41.05  E-value: 4.69e-03
                          10        20
                  ....*....|....*....|....*.
gi 440213964 1018 LTEHRRLILCGPSGTGKSYLARRLAE 1043
Cdd:COG0464   188 LPPPRGLLLYGPPGTGKTLLARALAG 213
DnaC COG1484
DNA replication protein DnaC [Replication, recombination and repair];
1001-1038 8.07e-03

DNA replication protein DnaC [Replication, recombination and repair];


Pssm-ID: 441093 [Multi-domain]  Cd Length: 242  Bit Score: 39.76  E-value: 8.07e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 440213964 1001 AFDSLIPRSIVHRYISL--LTEHRRLILCGPSGTGKSYLA 1038
Cdd:COG1484    77 DAQPGLDRRQILELATLdfIERGENLILLGPPGTGKTHLA 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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