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Conserved domains on  [gi|390427019|gb|AFL74084|]
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NifQ [Thiocystis violascens DSM 198]

Protein Classification

nitrogen fixation protein NifQ( domain architecture ID 10522533)

nitrogen fixation protein NifQ is required for the biosynthesis of iron-molybdenum cofactor (FeMo-co) of nitrogenase and may be involved in molybdenum processing

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
NifQ pfam04891
NifQ; NifQ is involved in early stages of the biosynthesis of the iron-molybdenum cofactor ...
31-191 1.23e-84

NifQ; NifQ is involved in early stages of the biosynthesis of the iron-molybdenum cofactor (FeMo-co), which is an integral part of the active site of dinitrogenase. The conserved C-terminal cysteine residues may be involved in metal binding.


:

Pssm-ID: 428177  Cd Length: 159  Bit Score: 246.74  E-value: 1.23e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390427019   31 AFASMIATRAAGGGALPVWLGLDLQAFRGLITYHFPGVSPDVLSATDGgiPLKAARQDEREELIDLMLTYRAHESPSEVW 110
Cdd:pfam04891   1 VLACILALALAEAGALPAALGLDAAALAALLARHFPGASAAVALSLAG--PLAPPRDDEEEDLRDLLLEHRSGDAAEERW 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390427019  111 MAQTVAAGCMAGDHLWHDLGLWNRGELTALMRRNFPLLAARNVKDMKWKRFLYKQLCETEGIHVCRAPSCEVCVDYHVCF 190
Cdd:pfam04891  79 LAAIVARRCMGPNHLWQDLGLRSRAELSALMRRHFPPLAARNTRDMKWKKFFYRQLCEREGIVLCRAPSCEECDDYAVCF 158

                  .
gi 390427019  191 G 191
Cdd:pfam04891 159 G 159
 
Name Accession Description Interval E-value
NifQ pfam04891
NifQ; NifQ is involved in early stages of the biosynthesis of the iron-molybdenum cofactor ...
31-191 1.23e-84

NifQ; NifQ is involved in early stages of the biosynthesis of the iron-molybdenum cofactor (FeMo-co), which is an integral part of the active site of dinitrogenase. The conserved C-terminal cysteine residues may be involved in metal binding.


Pssm-ID: 428177  Cd Length: 159  Bit Score: 246.74  E-value: 1.23e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390427019   31 AFASMIATRAAGGGALPVWLGLDLQAFRGLITYHFPGVSPDVLSATDGgiPLKAARQDEREELIDLMLTYRAHESPSEVW 110
Cdd:pfam04891   1 VLACILALALAEAGALPAALGLDAAALAALLARHFPGASAAVALSLAG--PLAPPRDDEEEDLRDLLLEHRSGDAAEERW 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390427019  111 MAQTVAAGCMAGDHLWHDLGLWNRGELTALMRRNFPLLAARNVKDMKWKRFLYKQLCETEGIHVCRAPSCEVCVDYHVCF 190
Cdd:pfam04891  79 LAAIVARRCMGPNHLWQDLGLRSRAELSALMRRHFPPLAARNTRDMKWKKFFYRQLCEREGIVLCRAPSCEECDDYAVCF 158

                  .
gi 390427019  191 G 191
Cdd:pfam04891 159 G 159
 
Name Accession Description Interval E-value
NifQ pfam04891
NifQ; NifQ is involved in early stages of the biosynthesis of the iron-molybdenum cofactor ...
31-191 1.23e-84

NifQ; NifQ is involved in early stages of the biosynthesis of the iron-molybdenum cofactor (FeMo-co), which is an integral part of the active site of dinitrogenase. The conserved C-terminal cysteine residues may be involved in metal binding.


Pssm-ID: 428177  Cd Length: 159  Bit Score: 246.74  E-value: 1.23e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390427019   31 AFASMIATRAAGGGALPVWLGLDLQAFRGLITYHFPGVSPDVLSATDGgiPLKAARQDEREELIDLMLTYRAHESPSEVW 110
Cdd:pfam04891   1 VLACILALALAEAGALPAALGLDAAALAALLARHFPGASAAVALSLAG--PLAPPRDDEEEDLRDLLLEHRSGDAAEERW 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 390427019  111 MAQTVAAGCMAGDHLWHDLGLWNRGELTALMRRNFPLLAARNVKDMKWKRFLYKQLCETEGIHVCRAPSCEVCVDYHVCF 190
Cdd:pfam04891  79 LAAIVARRCMGPNHLWQDLGLRSRAELSALMRRHFPPLAARNTRDMKWKKFFYRQLCEREGIVLCRAPSCEECDDYAVCF 158

                  .
gi 390427019  191 G 191
Cdd:pfam04891 159 G 159
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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