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Conserved domains on  [gi|386922303|gb|AFJ45257|]
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putative lipoprotein [Shimwellia blattae DSM 4481 = NBRC 105725]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YsaB super family cl16519
YsaB-like lipoprotein; This family of proteins is functionally uncharacterized. These proteins ...
 29-103 1.59e-38

YsaB-like lipoprotein; This family of proteins is functionally uncharacterized. These proteins are related to E.coli YsaB. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. These proteins are lipoproteins.


The actual alignment was detected with superfamily member pfam13983:

Pssm-ID: 404804  Cd Length: 75  Bit Score: 123.54  E-value: 1.59e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 386922303   29 QYAQRAHTAPVRQFDMEQSCRDAAAMRYNTRAQQLTISQLERFQGSYEVSGTTRREEHFTCSFDDAGQFLHLSMR 103
Cdd:pfam13983   1 QKAQRAHTAPVRQLDMEQLCKDQAAMRYNTRTQQLDVSQFEQFQGSYEVSGTTRREEHFTCSFDDAGQFLHLSMR 75
 
Name Accession Description Interval E-value
YsaB pfam13983
YsaB-like lipoprotein; This family of proteins is functionally uncharacterized. These proteins ...
 29-103 1.59e-38

YsaB-like lipoprotein; This family of proteins is functionally uncharacterized. These proteins are related to E.coli YsaB. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. These proteins are lipoproteins.


Pssm-ID: 404804  Cd Length: 75  Bit Score: 123.54  E-value: 1.59e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 386922303   29 QYAQRAHTAPVRQFDMEQSCRDAAAMRYNTRAQQLTISQLERFQGSYEVSGTTRREEHFTCSFDDAGQFLHLSMR 103
Cdd:pfam13983   1 QKAQRAHTAPVRQLDMEQLCKDQAAMRYNTRTQQLDVSQFEQFQGSYEVSGTTRREEHFTCSFDDAGQFLHLSMR 75
 
Name Accession Description Interval E-value
YsaB pfam13983
YsaB-like lipoprotein; This family of proteins is functionally uncharacterized. These proteins ...
 29-103 1.59e-38

YsaB-like lipoprotein; This family of proteins is functionally uncharacterized. These proteins are related to E.coli YsaB. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. These proteins are lipoproteins.


Pssm-ID: 404804  Cd Length: 75  Bit Score: 123.54  E-value: 1.59e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 386922303   29 QYAQRAHTAPVRQFDMEQSCRDAAAMRYNTRAQQLTISQLERFQGSYEVSGTTRREEHFTCSFDDAGQFLHLSMR 103
Cdd:pfam13983   1 QKAQRAHTAPVRQLDMEQLCKDQAAMRYNTRTQQLDVSQFEQFQGSYEVSGTTRREEHFTCSFDDAGQFLHLSMR 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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