|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
679-1348 |
2.40e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.19 E-value: 2.40e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 679 DDKIRLLEEQLQH--EISNKMEEFKILNDQNKALKLEVQ--KLQTLVSE-QPNKDVVEQMEKCIQEKDEKLKTVEELLET 753
Cdd:TIGR02168 192 EDILNELERQLKSleRQAEKAERYKELKAELRELELALLvlRLEELREElEELQEELKEAEEELEELTAELQELEEKLEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 754 GLIQVATKEEELNAIRTENSSLTKEVQDLKA-KQNDQVSFASLVEELKkvihEKDGKIKSVEELLEAELLKVANKEKTVQ 832
Cdd:TIGR02168 272 LRLEVSELEEEIEELQKELYALANEISRLEQqKQILRERLANLERQLE----ELEAQLEELESKLDELAEELAELEEKLE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 833 DLKQEIKALKEEIGNVQLEKAQQLS----ITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESL- 907
Cdd:TIGR02168 348 ELKEELESLEAELEELEAELEELESrleeLEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELl 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 908 --------KAHVQEVAQHNLKEVSSASQFEELEIVLKEKENELKRVEAMLKERESDL---SSKTKLLQDVQDENKLFKSQ 976
Cdd:TIGR02168 428 kkleeaelKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELaqlQARLDSLERLQENLEGFSEG 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 977 IEQLKQQNYQQASSFPPHEELLKVISEREKEISG---------LWNELDSLKDAVEHQRKKNN-----------DLREKN 1036
Cdd:TIGR02168 508 VKALLKNQSGLSGILGVLSELISVDEGYEAAIEAalggrlqavVVENLNAAKKAIAFLKQNELgrvtflpldsiKGTEIQ 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1037 WEAMEALASTEKMLQ--DKVNKTSKERQ-------QQVEAVE--LEAKEVLKKLFPKVSVPSnlsysewLHGFEKKAKEC 1105
Cdd:TIGR02168 588 GNDREILKNIEGFLGvaKDLVKFDPKLRkalsyllGGVLVVDdlDNALELAKKLRPGYRIVT-------LDGDLVRPGGV 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1106 MAGTSGSEEVKVLEHK--LKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFT 1183
Cdd:TIGR02168 661 ITGGSAKTNSSILERRreIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1184 SSEQELERLRRENKDIENLRREREHLEMELEKAEmerstyvTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLN 1263
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAE-------EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1264 ETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDITVIENSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVN 1343
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
....*
gi 384946988 1344 QQLTK 1348
Cdd:TIGR02168 894 SELEE 898
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
468-1270 |
2.52e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.64 E-value: 2.52e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 468 KLQQEEVQKK--NAEQAVTQLKVQLQEAERRW-------EEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTD 538
Cdd:TIGR02168 171 KERRKETERKleRTRENLDRLEDILNELERQLkslerqaEKAERYKELKAELRELELALLVLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 539 tLVSKQQLEQRLMQLMESEQKRVNKE-ESLQMQVQDILEQNEALKAQIQQFHSQIAAQtsaSVLAEELHKVIAEKDKQIK 617
Cdd:TIGR02168 251 -AEEELEELTAELQELEEKLEELRLEvSELEEEIEELQKELYALANEISRLEQQKQIL---RERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 618 QTEDSLANERDHLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISNKM 697
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 698 EEFKILNDQNKALKLEVQKLQTLVSEQPNKDV---VEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSS 774
Cdd:TIGR02168 407 ARLERLEDRRERLQQEIEELLKKLEEAELKELqaeLEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 775 LTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKE------------KTVQDLKQEIKALK 842
Cdd:TIGR02168 487 LQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEaalggrlqavvvENLNAAKKAIAFLK 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 843 E-EIGNVQLEKAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWL------QDLQEENESLKAHVQEVA 915
Cdd:TIGR02168 567 QnELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvDDLDNALELAKKLRPGYR 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 916 QHNL------KEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQAS 989
Cdd:TIGR02168 647 IVTLdgdlvrPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 990 SFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKVNKTSKERQQ---QVE 1066
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAlreALD 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1067 AVELEAKEVLKKLFPKVSVPSNLSysewlhgFEKKAKECMAGTSgSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAEt 1146
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLE-------RRIAATERRLEDL-EEQIEELSEDIESLAAEIEELEELIEELESELEA- 877
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1147 egiLQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIEN------------LRREREHLEMELE 1214
Cdd:TIGR02168 878 ---LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELrleglevridnlQERLSEEYSLTLE 954
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 384946988 1215 KAEMERSTYVTEVRELKDLLTELQKKLD-------DSYSEAVRQNEELNLLKAQ---LNETLTKLR 1270
Cdd:TIGR02168 955 EAEALENKIEDDEEEARRRLKRLENKIKelgpvnlAAIEEYEELKERYDFLTAQkedLTEAKETLE 1020
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
453-1297 |
7.10e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 7.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 453 QDYARLVNELTEKTGKLQQEEVQKKNAEQAvtQLKVQLQEAERRWEEVQSYIRKRTAEHEaaqqDLQSKFVAKENEVQSL 532
Cdd:TIGR02168 213 ERYKELKAELRELELALLVLRLEELREELE--ELQEELKEAEEELEELTAELQELEEKLE----ELRLEVSELEEEIEEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 533 HSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIaaqtsasvlaEELHKVIAEK 612
Cdd:TIGR02168 287 QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL----------EELKEELESL 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 613 DKQIKQTEDSLANERDHLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQsvyvkddkiRLLEEQLQHE 692
Cdd:TIGR02168 357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE---------RLQQEIEELL 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 693 ISNKMEEFKILNDQNKALKLEVQKLQTlvseqpNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTEN 772
Cdd:TIGR02168 428 KKLEEAELKELQAELEELEEELEELQE------ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 773 SSLTKEVQDLKAKQNDQVSFASLVEELKKViHEKDGKIKSVEELLEAELLKVANKEktvqDLKQEIKALKE-EIGNVQLE 851
Cdd:TIGR02168 502 EGFSEGVKALLKNQSGLSGILGVLSELISV-DEGYEAAIEAALGGRLQAVVVENLN----AAKKAIAFLKQnELGRVTFL 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 852 KAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWL------QDLQEENESLKAHVQEVAQHNL------ 919
Cdd:TIGR02168 577 PLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvDDLDNALELAKKLRPGYRIVTLdgdlvr 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 920 KEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLK 999
Cdd:TIGR02168 657 PGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1000 VISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKVNKTSKERQQQVEAVELEAKEVlkkl 1079
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL---- 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1080 fpkvsvpsnlsysewlhgfekkakecmagtsgsEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQ 1159
Cdd:TIGR02168 813 ---------------------------------TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA 859
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1160 EENKWKVKVDESHKTIKQMQSSFTSSEQELERLRrenKDIENLRREREHLEmelekaemerstyvTEVRELKDLLTELQK 1239
Cdd:TIGR02168 860 EIEELEELIEELESELEALLNERASLEEALALLR---SELEELSEELRELE--------------SKRSELRRELEELRE 922
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 384946988 1240 KLDDSyseavrqNEELNLLKAQLNETLTKLRTEQN--------ERQKVAGDLHKAQQSLELIQSKI 1297
Cdd:TIGR02168 923 KLAQL-------ELRLEGLEVRIDNLQERLSEEYSltleeaeaLENKIEDDEEEARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
446-1081 |
3.79e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.59 E-value: 3.79e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 446 AELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 525
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 526 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEEL 605
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 606 HKVIAEKDKQIKQTEDSLANERDHLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLL 685
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 686 EEQLQHEISNKMEEFKILNDQNKALKLEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEkLKTVEELLETgLIQVATKEEEL 765
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV-LIGVEAAYEA-ALEAALAAALQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 766 NAIRTENSSLTKEVQDLKAKQNDQVSFASLVEelkkvihEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEI 845
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDK-------IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 846 GNVQLEKAQQLSITSQVQELQNLLKGKEEQmntMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKEVSSA 925
Cdd:COG1196 623 LGRTLVAARLEAALRRAVTLAGRLREVTLE---GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 926 SQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKlfksqiEQLKQQNYQQASSFPPHEELLKVISERE 1005
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEE------ELLEEEALEELPEPPDLEELERELERLE 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1006 KEISGLWN-------ELDSLKDAVEHQRKKNNDLReknweamEALASTEKMLqDKVNKTSKER-QQQVEAVELEAKEVLK 1077
Cdd:COG1196 774 REIEALGPvnllaieEYEELEERYDFLSEQREDLE-------EARETLEEAI-EEIDRETRERfLETFDAVNENFQELFP 845
|
....
gi 384946988 1078 KLFP 1081
Cdd:COG1196 846 RLFG 849
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
458-1199 |
6.05e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.94 E-value: 6.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 458 LVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQ---QDLQSKFVAKENEVQSLHS 534
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 535 KLTDtlvSKQQLEQRLMQLMESEQKRVNKEESLQM---QVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAE 611
Cdd:TIGR02168 310 RLAN---LERQLEELEAQLEELESKLDELAEELAEleeKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 612 KDKQIKQTEDSLANErdhLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAH-----ELEKMQQSVYVKDDKIRLLE 686
Cdd:TIGR02168 387 KVAQLELQIASLNNE---IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELqaeleELEEELEELQEELERLEEAL 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 687 EQLQHEISNKMEEFKILNDQNKALKLEVQKLQTLVS--EQPNKDVVEQMEKCIQEKDE-----KLKTVEELLETGLiqVA 759
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQARLDSLERLQEnlEGFSEGVKALLKNQSGLSGIlgvlsELISVDEGYEAAI--EA 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 760 TKEEELNAIRTENSSLTKE-VQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKT-------- 830
Cdd:TIGR02168 542 ALGGRLQAVVVENLNAAKKaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyl 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 831 ------VQDLKQEIKALKE--------------------------EIGNVQLEKAQQLS-ITSQVQELQNLLKGKEEQMN 877
Cdd:TIGR02168 622 lggvlvVDDLDNALELAKKlrpgyrivtldgdlvrpggvitggsaKTNSSILERRREIEeLEEKIEELEEKIAELEKALA 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 878 TMKAVLEEKEKDLANTGKWLQDLQ----EENESLKAHVQEVAQHNLKEVSSASQFEELEIVLKEKENELKRVEAMLKERE 953
Cdd:TIGR02168 702 ELRKELEELEEELEQLRKELEELSrqisALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 954 SDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLR 1033
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1034 EKNWEAMEAlastekmLQDKVNKTSKERQQQVEAVElEAKEVLKKLfpkvsvpsnlsysewlhgfekkakecmagtsgSE 1113
Cdd:TIGR02168 862 EELEELIEE-------LESELEALLNERASLEEALA-LLRSELEEL--------------------------------SE 901
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1114 EVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQrsvEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLR 1193
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ---ERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
....*.
gi 384946988 1194 RENKDI 1199
Cdd:TIGR02168 979 NKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
398-951 |
6.47e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 6.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 398 YQETQQMQMKFQQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDYARLVNELTEKTGKLQQEEVQKK 477
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELE-LELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 478 NAEQAvtqlKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESE 557
Cdd:COG1196 313 ELEER----LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 558 QKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQIKQTEDSLANERDHLTSKEEEL 637
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 638 KDIQNmnfLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQheISNKMEEFKILNDQNKALKLEVQKL 717
Cdd:COG1196 469 LEEAA---LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG--LRGLAGAVAVLIGVEAAYEAALEAA 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 718 QTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVE 797
Cdd:COG1196 544 LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLL 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 798 ELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSITSQVQELQNLLKGKEEQMN 877
Cdd:COG1196 624 GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 384946988 878 TMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKEVSSASQFEELEI-VLKEKENELKRVEAMLKE 951
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPpDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
309-1083 |
1.08e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.17 E-value: 1.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 309 KEKSGVIQDALKKSSKGELTTLVHQLQEKDKLLAAVKEDAAATKDRCKQLTQEMMSEKER---SNVVIARMKDRIGTLEK 385
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEleeLEAELEELESRLEELEE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 386 EHNVFQNKIHVSYQETQQMQMKFQqvreQMEAEIAHLKQENGILRdavSNTTNQLESKQSAELNKLRQDYARLVNELTEK 465
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIE----RLEARLERLEDRRERLQ---QEIEELLKKLEEAELKELQAELEELEEELEEL 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 466 TGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSyirkRTAEHEAAQQDLQSKFVAKENEVQSLhSKLTDTLvskqq 545
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQA----RLDSLERLQENLEGFSEGVKALLKNQ-SGLSGIL----- 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 546 leQRLMQLMESEQK-RVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSA-SVLAEELHKVIAEKDKQIKQTEDSL 623
Cdd:TIGR02168 523 --GVLSELISVDEGyEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTfLPLDSIKGTEIQGNDREILKNIEGF 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 624 ANERDHLTSKEEELKDiqNMNFLL-----------KAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHE 692
Cdd:TIGR02168 601 LGVAKDLVKFDPKLRK--ALSYLLggvlvvddldnALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRRE 678
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 693 ISNKMEEFKILNDQNKALKLEVQKLQTLVSEQpnKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTEN 772
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEEL--EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 773 SSLTKEVQDLKAKqndqvsfaslVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEK 852
Cdd:TIGR02168 757 TELEAEIEELEER----------LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 853 AQQL----SITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLAntgkwlqdlqEENESLKAHVQEVAQHNLKEVSSASQF 928
Cdd:TIGR02168 827 ESLErriaATERRLEDLEEQIEELSEDIESLAAEIEELEELIE----------ELESELEALLNERASLEEALALLRSEL 896
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 929 EELEIVLKEKENELKRVEAMLKEResdlssKTKLLQDVQDENKLfKSQIEQLKQQNYQQASSfpPHEELLKVISEREKEI 1008
Cdd:TIGR02168 897 EELSEELRELESKRSELRRELEEL------REKLAQLELRLEGL-EVRIDNLQERLSEEYSL--TLEEAEALENKIEDDE 967
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1009 SGLWNELDSLKdavehqrKKNNDLREKNWEAMEALASTEKMLQ------DKVNKTSKERQQQVEAVELEAKEVLKKLFPK 1082
Cdd:TIGR02168 968 EEARRRLKRLE-------NKIKELGPVNLAAIEEYEELKERYDfltaqkEDLTEAKETLEEAIEEIDREARERFKDTFDQ 1040
|
.
gi 384946988 1083 V 1083
Cdd:TIGR02168 1041 V 1041
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
29-160 |
6.80e-12 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 64.37 E-value: 6.80e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 29 MKETLYDEVLAKQKREQKLIPTKTDKKKAEKKKNKKK------EIQNGNLHESD----SESVPRDFKLSDALAVEDdqVV 98
Cdd:pfam05104 1 MKETSYEEALAKQRRELKKTPTEKEKKKKEKKKEKKKkskkkeEKPNGKLPESEqadeSEEEPREFKTPDEAPSAA--LE 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 384946988 99 PVPLNVVETSSSVRERKKKEKKQKPVLEEQVIKESDASKIPGKKVEPVPVTKQPTPPSEAAA 160
Cdd:pfam05104 79 PEPVPTPVPAPVEPEPAPPSESPAPSPKEKKKKEKKSAKVEPAETPEAVQPKPALEKEEPPA 140
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
442-907 |
4.70e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 67.35 E-value: 4.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 442 SKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRKRTaEHEAAQQDLQSK 521
Cdd:TIGR04523 148 KKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNK-SLESQISELKKQ 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 522 FVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAA--QTSAS 599
Cdd:TIGR04523 227 NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDlnNQKEQ 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 600 VLAEELHKVIAEKDKQIKQTEDSLANE-------RDHLTSKEEELKDIQNMNFLLKAE-------VQKLQALANEQAAAA 665
Cdd:TIGR04523 307 DWNKELKSELKNQEKKLEEIQNQISQNnkiisqlNEQISQLKKELTNSESENSEKQREleekqneIEKLKKENQSYKQEI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 666 HELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKLEVQKLQTLVSEQPNKDVV------------EQM 733
Cdd:TIGR04523 387 KNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVkeliiknldntrESL 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 734 EKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNdqvSFASLVEELKKVIHEKDGKIKSV 813
Cdd:TIGR04523 467 ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKIS---SLKEKIEKLESEKKEKESKISDL 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 814 EE--LLEAELLKVANKEKTVQDLKQEIKALKEEignvqlekaqQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLA 891
Cdd:TIGR04523 544 EDelNKDDFELKKENLEKEIDEKNKEIEELKQT----------QKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKIS 613
|
490
....*....|....*.
gi 384946988 892 NTGKWLQDLQEENESL 907
Cdd:TIGR04523 614 SLEKELEKAKKENEKL 629
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
452-1077 |
4.05e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.78 E-value: 4.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 452 RQDYARLVNELTEKTGKLQQEEVQKknAEQAVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQS 531
Cdd:PTZ00121 1165 KAEEARKAEDAKKAEAARKAEEVRK--AEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEA 1242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 532 LHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESlqMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEElhkviAE 611
Cdd:PTZ00121 1243 KKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA--RKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE-----AK 1315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 612 KDKQIKQTEDSLANERDHLTSKEEELKDIQNMNfLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQH 691
Cdd:PTZ00121 1316 KADEAKKKAEEAKKKADAAKKKAEEAKKAAEAA-KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 692 EISNKMEEFKILNDQNKALKLEVQKLQTLVSEQPNKDVVEQMEKCIQEK---DEKLKTVEElletgliqvATKEEELNAI 768
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAkkaDEAKKKAEE---------AKKAEEAKKK 1465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 769 RTEnsslTKEVQDLKAKQNDqvsfASLVEELKKVIHEkdGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEignv 848
Cdd:PTZ00121 1466 AEE----AKKADEAKKKAEE----AKKADEAKKKAEE--AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE---- 1531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 849 QLEKAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKE----VSS 924
Cdd:PTZ00121 1532 EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEkkmkAEE 1611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 925 ASQFEELEIVLKE--KENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVIS 1002
Cdd:PTZ00121 1612 AKKAEEAKIKAEElkKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAA 1691
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 384946988 1003 EREKEISGLWNELDSLKDAVEHQRKKNNDLR---EKNWEAMEALASTEKMLQDKVNKTSKERQQQVEAVELEAKEVLK 1077
Cdd:PTZ00121 1692 EALKKEAEEAKKAEELKKKEAEEKKKAEELKkaeEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKK 1769
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
309-1084 |
2.02e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 2.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 309 KEKSGVIQDALKKSSKGELTTLVHQLQEKDKLLAAVKEDAAATKDRCKQLT---QEMMSEKERSNVVIARMKDRIGTL-E 384
Cdd:TIGR02169 207 REKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTeeiSELEKRLEEIEQLLEELNKKIKDLgE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 385 KEHNVFQNKI---HVSYQETQQMQMKFQQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDYARLVNE 461
Cdd:TIGR02169 287 EEQLRVKEKIgelEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER-KRRDKLTEEYAELKEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 462 LTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRK---RTAEHEAAQQDLQSKFVAKENEVQSLHSKLTD 538
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRlqeELQRLSEELADLNAAIAGIEAKINELEEEKED 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 539 TLVSKQQLEQRLMQL---MESEQKRVNKEESLQMQVQDILEQNE----ALKAQIQQFHSQIAAQTSASVLAEE----LHK 607
Cdd:TIGR02169 446 KALEIKKQEWKLEQLaadLSKYEQELYDLKEEYDRVEKELSKLQrelaEAEAQARASEERVRGGRAVEEVLKAsiqgVHG 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 608 VIAE----KDKQIKQTEDSLANERDHLTSKEEE--------LKD--IQNMNFLLKAEVQKLQAlaneqaaaahELEKMQQ 673
Cdd:TIGR02169 526 TVAQlgsvGERYATAIEVAAGNRLNNVVVEDDAvakeaielLKRrkAGRATFLPLNKMRDERR----------DLSILSE 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 674 SVYVkDDKIRLLEEQLQHE-----------ISNKMEEFKILNDQNKALKLEVQKLQT-------LVSEQPNKDVVEQMEK 735
Cdd:TIGR02169 596 DGVI-GFAVDLVEFDPKYEpafkyvfgdtlVVEDIEAARRLMGKYRMVTLEGELFEKsgamtggSRAPRGGILFSRSEPA 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 736 CIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQN----DQVSFASLVEELKKVIHEKDGKIK 811
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEqleqEEEKLKERLEELEEDLSSLEQEIE 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 812 SVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKaqqlsITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLA 891
Cdd:TIGR02169 755 NVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPE-----IQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 892 NTGKWLQDLQEENESLKAHVQEVAQhnlKEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENK 971
Cdd:TIGR02169 830 YLEKEIQELQEQRIDLKEQIKSIEK---EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 972 LFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLR---EKNWEAMEALASTEK 1048
Cdd:TIGR02169 907 ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRalePVNMLAIQEYEEVLK 986
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 384946988 1049 M---LQDKVNKTSKER---QQQVEAVELEAKEVLKKLFPKVS 1084
Cdd:TIGR02169 987 RldeLKEKRAKLEEERkaiLERIEEYEKKKREVFMEAFEAIN 1028
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
741-1294 |
3.09e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 61.62 E-value: 3.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 741 DEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLkakqndqvsfaslvEELKKVIHEKDGKIKSVEELLEAE 820
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL--------------EELKEEIEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 821 LLKVANKEKTVQDLKQEIKALKEEIGNVqlekaqqlsitsqvqelqNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDL 900
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEELEEKVKEL------------------KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 901 QEENESLKAHVQEVAqhnlkevSSASQFEELEIVLKEKENELKRVEAMLKERESdlsSKTKLLQDVQDENKLFKSQIEQL 980
Cdd:PRK03918 320 EEEINGIEERIKELE-------EKEERLEELKKKLKELEKRLEELEERHELYEE---AKAKKEELERLKKRLTGLTPEKL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 981 KQQnYQQASSfpPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDL----REKNWEAMEALASTEKMLQDKVNK 1056
Cdd:PRK03918 390 EKE-LEELEK--AKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgRELTEEHRKELLEEYTAELKRIEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1057 TSKERQQQVEAVELEAKEVLKKLFPKVSVPSNLSYSEWLHGFEKKAKECMAG--TSGSEEVKVLEHKLKEADEMHTLLQL 1134
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEelEKKAEEYEKLKEKLIKLKGEIKSLKK 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1135 ECEK---YKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIENLRREREHLEM 1211
Cdd:PRK03918 547 ELEKleeLKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEE 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1212 ELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVR---------------QNEELNLLKAQLNETLTKLRTEQNER 1276
Cdd:PRK03918 627 ELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELReeylelsrelaglraELEELEKRREEIKKTLEKLKEELEER 706
|
570
....*....|....*...
gi 384946988 1277 QKVAGDLHKAQQSLELIQ 1294
Cdd:PRK03918 707 EKAKKELEKLEKALERVE 724
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
534-1075 |
8.42e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.08 E-value: 8.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 534 SKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKD 613
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 614 KQIKQTEDSLANERDHLTSKEEELKDIQNMNFLLKaEVQKLQALANEQAAAAHELEKMQQSVyvkDDKIRLLEEQLQhEI 693
Cdd:PRK03918 259 EKIRELEERIEELKKEIEELEEKVKELKELKEKAE-EYIKLSEFYEEYLDELREIEKRLSRL---EEEINGIEERIK-EL 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 694 SNKMEEFKILNDQNKALKLEVQKLQTLVSE-QPNKDVVEQMEKCIQE-KDEKLKTVEELLETGLIQVATKEEELNAIRTE 771
Cdd:PRK03918 334 EEKEERLEELKKKLKELEKRLEELEERHELyEEAKAKKEELERLKKRlTGLTPEKLEKELEELEKAKEEIEEEISKITAR 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 772 NSSLTKEVQDLK--------AKQNDQVSFASLVEELKKVIHEK--------------DGKIKSVEELLEAELLKVANKEK 829
Cdd:PRK03918 414 IGELKKEIKELKkaieelkkAKGKCPVCGRELTEEHRKELLEEytaelkriekelkeIEEKERKLRKELRELEKVLKKES 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 830 TVQDLKQ---EIKALKEEIGNVQLEKAQQLS-ITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENE 905
Cdd:PRK03918 494 ELIKLKElaeQLKELEEKLKKYNLEELEKKAeEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELA 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 906 SLKAHVQEVAQHNLKEVSsaSQFEELE------IVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQ 979
Cdd:PRK03918 574 ELLKELEELGFESVEELE--ERLKELEpfyneyLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 980 LKQQNYQQAssfppHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLR---EKNWEAMEALASTEKMLQDKVNK 1056
Cdd:PRK03918 652 LEKKYSEEE-----YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKeelEEREKAKKELEKLEKALERVEEL 726
|
570
....*....|....*....
gi 384946988 1057 TSKERQQQVEAVELEAKEV 1075
Cdd:PRK03918 727 REKVKKYKALLKERALSKV 745
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
667-1022 |
1.04e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.08 E-value: 1.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 667 ELEKMQQSVYVKDDKIRLLEEQLQ--HEISNKMEEFKILNDqnkalKLEVQKLQTLVSEqpnkdvVEQMEKCIQEKDEKL 744
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLErlRREREKAERYQALLK-----EKREYEGYELLKE------KEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 745 KTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKakQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKV 824
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLG--EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 825 ANKEKTVQDLKQEIKALKEEIGNVQLEKAQqlsitsqvqeLQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEEN 904
Cdd:TIGR02169 325 AKLEAEIDKLLAEIEELEREIEEERKRRDK----------LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 905 ESLKahvQEVAQHNLKEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQN 984
Cdd:TIGR02169 395 EKLK---REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
330 340 350
....*....|....*....|....*....|....*...
gi 384946988 985 YQQASSFpphEELLKVISEREKEISGLWNELDSLKDAV 1022
Cdd:TIGR02169 472 YDLKEEY---DRVEKELSKLQRELAEAEAQARASEERV 506
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1114-1351 |
1.31e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 1.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1114 EVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLR 1193
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1194 RENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELN----LLKAQLNETLTKL 1269
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAeaeeELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1270 RTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDITVIENSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKE 1349
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
..
gi 384946988 1350 KE 1351
Cdd:COG1196 473 AL 474
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
628-1238 |
1.52e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.31 E-value: 1.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 628 DHLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILND-Q 706
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEElK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 707 NKALKLEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETgLIQVATKEEELNAIRTENSSLTKEVQDLKAKQ 786
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE-LKELKEKAEEYIKLSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 787 NDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQdLKQEIKALKEEIGNVQLEKAQqLSITSQVQELQ 866
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEELERLKKRLTG-LTPEKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 867 NLLKGKEEQMNTMKAVLEEKeKDLANTGKWLQDLQEENESLKA------------HVQEVAQHNLKEVSS-ASQFEELEI 933
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARI-GELKKEIKELKKAIEELKKAKGkcpvcgrelteeHRKELLEEYTAELKRiEKELKEIEE 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 934 VLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQqassfppHEELLKVISEREKEISGLWN 1013
Cdd:PRK03918 474 KERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEE-------YEKLKEKLIKLKGEIKSLKK 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1014 ELdslkdavehqrKKNNDLREKNWEAMEALASTEKMLQDKVNKTSKERQQQVEAVELEAKEvLKKLfpkvsvpsnlsYSE 1093
Cdd:PRK03918 547 EL-----------EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKE-LEPF-----------YNE 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1094 WLhgfekkakecmagtsgseEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWkvkvdeSHK 1173
Cdd:PRK03918 604 YL------------------ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY------SEE 659
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 384946988 1174 TIKQMQSSFTSSEQELERLRRENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQ 1238
Cdd:PRK03918 660 EYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVE 724
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
416-981 |
2.86e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.54 E-value: 2.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 416 EAEIAHLKQENGILRDAVSNTTNQLESKQ---SAELNKLRqdyaRLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQE 492
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELpelREELEKLE----KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 493 AERRWEEVqsyiRKRTAEHEAAQQDLQS-KFVAKE-NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQ 570
Cdd:PRK03918 264 LEERIEEL----KKEIEELEEKVKELKElKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 571 VQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAE-KDKQIKQTEDSLANERDHLTSKEEELKDIqnmnfllKA 649
Cdd:PRK03918 340 LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRlTGLTPEKLEKELEELEKAKEEIEEEISKI-------TA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 650 EVQKLQALANEQAAAAHELEKMQQSVYV------KDDKIRLLEEQLQhEISNKMEEFKILNDQNKALKLEVQKLQTLVSE 723
Cdd:PRK03918 413 RIGELKKEIKELKKAIEELKKAKGKCPVcgreltEEHRKELLEEYTA-ELKRIEKELKEIEEKERKLRKELRELEKVLKK 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 724 QPNKDVVEQMEKCIQEKDEKLKTVE-ELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAkqndqvsFASLVEELKKV 802
Cdd:PRK03918 492 ESELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE-------LKKKLAELEKK 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 803 IHEKDGKIKSVEELLEAELLKvankekTVQDLKQEIKALkEEIGNVQLEkaqQLSITSQVQELQNLLKGKEEQmntmkav 882
Cdd:PRK03918 565 LDELEEELAELLKELEELGFE------SVEELEERLKEL-EPFYNEYLE---LKDAEKELEREEKELKKLEEE------- 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 883 LEEKEKDLANTGKWLQDLQEENESLKAHVQEvaqhnlkevssaSQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKL 962
Cdd:PRK03918 628 LDKAFEELAETEKRLEELRKELEELEKKYSE------------EEYEELREEYLELSRELAGLRAELEELEKRREEIKKT 695
|
570
....*....|....*....
gi 384946988 963 LQDVQDENKLFKSQIEQLK 981
Cdd:PRK03918 696 LEKLKEELEEREKAKKELE 714
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
678-1329 |
3.38e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 3.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 678 KDDKIRLLEEQLQHEISNKMEEFKILNDQNKALklEVQKlqtlvSEQPNKDVVEQmekciqEKDEKLKTVEELLETGLIQ 757
Cdd:PTZ00121 1195 KAEDARKAEAARKAEEERKAEEARKAEDAKKAE--AVKK-----AEEAKKDAEEA------KKAEEERNNEEIRKFEEAR 1261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 758 VATKEEELNAIRTENSSLTKEVQdlKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQE 837
Cdd:PTZ00121 1262 MAHFARRQAAIKAEEARKADELK--KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAE 1339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 838 IKALKEEIGNVQLEKAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLAntgkwlQDLQEENESLKAHVQEVAqh 917
Cdd:PTZ00121 1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA------DEAKKKAEEDKKKADELK-- 1411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 918 nlKEVSSASQFEELeivlKEKENELKRVEAMLKERESdlSSKTKLLQDVQDENKlfKSQIEQLKQQNYQQASSFPPHEEL 997
Cdd:PTZ00121 1412 --KAAAAKKKADEA----KKKAEEKKKADEAKKKAEE--AKKADEAKKKAEEAK--KAEEAKKKAEEAKKADEAKKKAEE 1481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 998 LKVISEREKEISGLWNELDSLKDAVEhQRKKNNDLR--EKNWEAMEALASTEKMLQDKVNKTSKERQqqveAVELEAKEV 1075
Cdd:PTZ00121 1482 AKKADEAKKKAEEAKKKADEAKKAAE-AKKKADEAKkaEEAKKADEAKKAEEAKKADEAKKAEEKKK----ADELKKAEE 1556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1076 LKKLFPKVSVPSNLSYSEWLHGFEKKAKEcmagTSGSEEVKVLE-HKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQ 1154
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEE----AKKAEEARIEEvMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEK 1632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1155 RSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIENLRREREHlEMELEKAEMERSTYVTEVRELKDLL 1234
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED-EKKAAEALKKEAEEAKKAEELKKKE 1711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1235 TELQKKlddsySEAVRQNEELNLLKAQL--------NETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDITV 1306
Cdd:PTZ00121 1712 AEEKKK-----AEELKKAEEENKIKAEEakkeaeedKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELD 1786
|
650 660
....*....|....*....|...
gi 384946988 1307 IENSDVSPETESSEKETMSVSLN 1329
Cdd:PTZ00121 1787 EEDEKRRMEVDKKIKDIFDNFAN 1809
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
826-1322 |
3.72e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.15 E-value: 3.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 826 NKEKTVQDLKQEIKALKEEIGnvqlekaqqlSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENE 905
Cdd:PRK03918 162 NAYKNLGEVIKEIKRRIERLE----------KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 906 SLKAHVQEVAQHNLKEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKL--FKSQIEQLKQQ 983
Cdd:PRK03918 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLseFYEEYLDELRE 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 984 NYQQASSFpphEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNW---EAMEALASTEKMLQDKVNKTSKE 1060
Cdd:PRK03918 312 IEKRLSRL---EEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHElyeEAKAKKEELERLKKRLTGLTPEK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1061 RQQQVEAVELEAKEVLKKLFPKVSVPSNLSYSEwlhGFEKKAKECMAGTSG---------------------SEEVKVLE 1119
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEI---KELKKAIEELKKAKGkcpvcgrelteehrkelleeyTAELKRIE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1120 HKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQ-----RSVEQEENKWKV-KVDESHKTIKQMQSSFTSSEQELERLR 1193
Cdd:PRK03918 466 KELKEIEEKERKLRKELRELEKVLKKESELIKLKElaeqlKELEEKLKKYNLeELEKKAEEYEKLKEKLIKLKGEIKSLK 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1194 RENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTEQ 1273
Cdd:PRK03918 546 KELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLE 625
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 384946988 1274 NERQKVAGDLHKAQQSLELIQSKIVKAAGDITVIENSDVSPETESSEKE 1322
Cdd:PRK03918 626 EELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRE 674
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
376-983 |
4.47e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.82 E-value: 4.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 376 MKDRIGTLEKEHnvfQNKIHVSYQetqQMQMKFQQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKlRQDY 455
Cdd:pfam15921 243 VEDQLEALKSES---QNKIELLLQ---QHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQ-NSMY 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 456 ARLVNELtektgklqqeevqkknaEQAVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSK 535
Cdd:pfam15921 316 MRQLSDL-----------------ESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQ 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 536 LTDTLVSKQQLEQRLMQLMESEQKRVNKE--------------ESLQMQVQDILEQNEALKAQIQ-QFHSQIAAQTSASV 600
Cdd:pfam15921 379 LQKLLADLHKREKELSLEKEQNKRLWDRDtgnsitidhlrrelDDRNMEVQRLEALLKAMKSECQgQMERQMAAIQGKNE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 601 LAEELHKVIAekdkQIKQTEDSLANERDHLTSKEEELKDIQNMNFLLKAEvqkLQALANEQAAAAHELEKMQQSVYVKdd 680
Cdd:pfam15921 459 SLEKVSSLTA----QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTAS---LQEKERAIEATNAEITKLRSRVDLK-- 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 681 kirllEEQLQHeISNKMEEFKILNDQNKALKLEvqklqtlvseqpnkdvveqmekcIQEKDEKLKTVEELLETGLIQVAT 760
Cdd:pfam15921 530 -----LQELQH-LKNEGDHLRNVQTECEALKLQ-----------------------MAEKDKVIEILRQQIENMTQLVGQ 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 761 KEEELNAIRTENSSLTKEVQDLKAKQNDqvsFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKA 840
Cdd:pfam15921 581 HGRTAGAMQVEKAQLEKEINDRRLELQE---FKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQ 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 841 LKEEIGNVQLEKAqqlSITSQVQELQNLLKGKEEQM----NTMKAVLEEKEKDLANTGKWLQDLqeenESLKAHVQEVAQ 916
Cdd:pfam15921 658 LLNEVKTSRNELN---SLSEDYEVLKRNFRNKSEEMetttNKLKMQLKSAQSELEQTRNTLKSM----EGSDGHAMKVAM 730
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 384946988 917 HNLKEVSSA-SQFEELEI---VLKEKENELKRVEAMLKERESDLSSKtklLQDVQDENKLFKSQIEQLKQQ 983
Cdd:pfam15921 731 GMQKQITAKrGQIDALQSkiqFLEEAMTNANKEKHFLKEEKNKLSQE---LSTVATEKNKMAGELEVLRSQ 798
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
326-584 |
8.52e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 8.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 326 ELTTLVHQLQEKDKLLAAVKEDAAATKDRCKQLTQEMMSEKERsnvvIARMKDRIGTLEKEHNVFQNKIHVSYQETQQMQ 405
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER----RRELEERLEELEEELAELEEELEELEEELEELE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 406 MKFQQVREQMEAEIAHLKQENGILRDAVsnttnQLESKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQ 485
Cdd:COG1196 344 EELEEAEEELEEAEAELAEAEEALLEAE-----AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 486 LKVQLQEAERRWEEVqsyiRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEE 565
Cdd:COG1196 419 LEEELEELEEALAEL----EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
250
....*....|....*....
gi 384946988 566 SLQMQVQDILEQNEALKAQ 584
Cdd:COG1196 495 LLLEAEADYEGFLEGVKAA 513
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
396-1063 |
1.26e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 56.59 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 396 VSYQETQQMQMKFQQVREQMEAEIAHLKQENGILRdAVSNTTNQLESKQSaELNKLRQDYARLVNELteKTGKLQQEEVQ 475
Cdd:TIGR00606 207 MELKYLKQYKEKACEIRDQITSKEAQLESSREIVK-SYENELDPLKNRLK-EIEHNLSKIMKLDNEI--KALKSRKKQME 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 476 KKNAEQAVTQLKVqLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLME 555
Cdd:TIGR00606 283 KDNSELELKMEKV-FQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 556 SEQKRVNKEESLQMQVQ-DILEQNEALKAQIQQFHSQIAAQTS-----ASVLAEELHKVIAEKDKQIKQTED-------S 622
Cdd:TIGR00606 362 HIRARDSLIQSLATRLElDGFERGPFSERQIKNFHTLVIERQEdeaktAAQLCADLQSKERLKQEQADEIRDekkglgrT 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 623 LANERDHLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQS----------VYVKDDKIRLLE------ 686
Cdd:TIGR00606 442 IELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNsltetlkkevKSLQNEKADLDRklrkld 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 687 ---EQLQHEISNKMEEFKILNDQNKA----LKLEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVA 759
Cdd:TIGR00606 522 qemEQLNHHTTTRTQMEMLTKDKMDKdeqiRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELA 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 760 TKEEELNAIRTENSSLTKEVQDLKAK-------QNDQVSFASLVEELKK------------------------------- 801
Cdd:TIGR00606 602 SLEQNKNHINNELESKEEQLSSYEDKlfdvcgsQDEESDLERLKEEIEKsskqramlagatavysqfitqltdenqsccp 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 802 --------------VIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLE----KAQQLSITSQVQ 863
Cdd:TIGR00606 682 vcqrvfqteaelqeFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEipelRNKLQKVNRDIQ 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 864 ELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQhnLKEVSSASQFEELEIVLKEKENELK 943
Cdd:TIGR00606 762 RLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAK--LQGSDLDRTVQQVNQEKQEKQHELD 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 944 RVEAMLKEREsdlssktKLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVE 1023
Cdd:TIGR00606 840 TVVSKIELNR-------KLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDS 912
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 384946988 1024 HQRKKNNDLREKNWEAMEALASTEKMLQDKVNKTSKERQQ 1063
Cdd:TIGR00606 913 PLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKN 952
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
448-1332 |
3.61e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.12 E-value: 3.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 448 LNKLRQDYARLVNELTEKTGKLQQ-EEVQKKNAEQAVTQLKVQLQEAERRwEEVQSYIRKRTAEheaAQQDLQSKFVAKE 526
Cdd:pfam15921 76 IERVLEEYSHQVKDLQRRLNESNElHEKQKFYLRQSVIDLQTKLQEMQME-RDAMADIRRRESQ---SQEDLRNQLQNTV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 527 NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEqkrvnkeESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASvLAEELH 606
Cdd:pfam15921 152 HELEAAKCLKEDMLEDSNTQIEQLRKMMLSH-------EGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRS-LGSAIS 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 607 KVIAEKDKQIKQTEDSLANERDHLTSKEEELKDiqNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLE 686
Cdd:pfam15921 224 KILRELDTEISYLKGRIFPVEDQLEALKSESQN--KIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQL 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 687 EQLQHEISNkmeefkilndQNKALKLEVQKLQTLVSEQPNkdvveqmekciqEKDEKLKTVEELLETGLIQVATKEEELN 766
Cdd:pfam15921 302 EIIQEQARN----------QNSMYMRQLSDLESTVSQLRS------------ELREAKRMYEDKIEELEKQLVLANSELT 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 767 AIRTENSSLTKEVQDLkakqNDQVsfaslvEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEig 846
Cdd:pfam15921 360 EARTERDQFSQESGNL----DDQL------QKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNME-- 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 847 nvqlekaqqlsitsqVQELQNLLKGKEE----QMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKEV 922
Cdd:pfam15921 428 ---------------VQRLEALLKAMKSecqgQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLE 492
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 923 SSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQASSfpphEELLKVIS 1002
Cdd:pfam15921 493 SSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEK----DKVIEILR 568
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1003 EREKEISGLWNELDSLKDAVEHQRKK-NNDLREKNWEAMEAlasteKMLQDKVNKTSKERQQQVEAVELEAKEVLkklfp 1081
Cdd:pfam15921 569 QQIENMTQLVGQHGRTAGAMQVEKAQlEKEINDRRLELQEF-----KILKDKKDAKIRELEARVSDLELEKVKLV----- 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1082 kvsvpsnlsysewlhgfekkakecmagTSGSEEVKVLEHKLKEADEMHTLLQlecekyksvlaETEGILQKLQRSVEQEE 1161
Cdd:pfam15921 639 ---------------------------NAGSERLRAVKDIKQERDQLLNEVK-----------TSRNELNSLSEDYEVLK 680
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1162 NKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIENLRREREHLEMELEKAemerstyVTEVRELKDLLTELQKKL 1241
Cdd:pfam15921 681 RNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQ-------ITAKRGQIDALQSKIQFL 753
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1242 DDSYSEAvrqNEELNLLKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKI--VKAAGDITVIENSDVSPETESS 1319
Cdd:pfam15921 754 EEAMTNA---NKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVanMEVALDKASLQFAECQDIIQRQ 830
|
890
....*....|...
gi 384946988 1320 EKETMSVSLNQTV 1332
Cdd:pfam15921 831 EQESVRLKLQHTL 843
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
463-1276 |
3.80e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 3.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 463 TEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEvqsyIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLtdtlvs 542
Cdd:TIGR02169 205 REREKAERYQALLKEKREYEGYELLKEKEALERQKEA----IERQLASLEEELEKLTEEISELEKRLEEIEQLL------ 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 543 kQQLEQRLMQLMESEQKRVNKE-ESLQMQVQDILEQNEALKAQIQQfhsqiaaqtsasvLAEELHKVIAEKDKQIKQTED 621
Cdd:TIGR02169 275 -EELNKKIKDLGEEEQLRVKEKiGELEAEIASLERSIAEKERELED-------------AEERLAKLEAEIDKLLAEIEE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 622 SlanerdhltskEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFK 701
Cdd:TIGR02169 341 L-----------EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 702 ILNDQNKALKLEV----QKLQTLVSEQPN-KDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLT 776
Cdd:TIGR02169 410 RLQEELQRLSEELadlnAAIAGIEAKINElEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 777 KEVQDLKAK----QNDQVSFASLVEELKKVIhekDGKIKSVEELLEAELLKVANKE------------KTVQDLKQEIKA 840
Cdd:TIGR02169 490 RELAEAEAQarasEERVRGGRAVEEVLKASI---QGVHGTVAQLGSVGERYATAIEvaagnrlnnvvvEDDAVAKEAIEL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 841 LKEEignvQLEKAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKW-LQD--LQEENESLKAHVQEVAQH 917
Cdd:TIGR02169 567 LKRR----KAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYvFGDtlVVEDIEAARRLMGKYRMV 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 918 NL--------------------KEVSSASQFEELEIV---LKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFK 974
Cdd:TIGR02169 643 TLegelfeksgamtggsraprgGILFSRSEPAELQRLrerLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 975 SQIEQLKQQnyqqassfppHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKV 1054
Cdd:TIGR02169 723 KEIEQLEQE----------EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1055 NKTSKERQQQVEAVELEAKEVLKklfpkvSVPSNLSYSEWLHGFEKKAKEcmagtsgSEEVKVLEHKLKEADEMHT--LL 1132
Cdd:TIGR02169 793 IPEIQAELSKLEEEVSRIEARLR------EIEQKLNRLTLEKEYLEKEIQ-------ELQEQRIDLKEQIKSIEKEieNL 859
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1133 QLECEKYKSVLAETEGILQKLqrsvEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIENLRREREHLEME 1212
Cdd:TIGR02169 860 NGKKEELEEELEELEAALRDL----ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 384946988 1213 LEKAEMERSTYVTEVRELKDLLTELQKKLddsysEAVRQNEELNLL--------KAQLNETLTKLRTEQNER 1276
Cdd:TIGR02169 936 IEDPKGEDEEIPEEELSLEDVQAELQRVE-----EEIRALEPVNMLaiqeyeevLKRLDELKEKRAKLEEER 1002
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
603-1300 |
2.42e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 2.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 603 EELHKVIAEKDKQIkqteDSLANERDHLTSKEEELKDIQNMNF-LLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDK 681
Cdd:TIGR02169 187 ERLDLIIDEKRQQL----ERLRREREKAERYQALLKEKREYEGyELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 682 IRLLEEQLQHEIS------NKMEEFKILNDQNKALKLEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGL 755
Cdd:TIGR02169 263 LEKRLEEIEQLLEelnkkiKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 756 IQVATKEEELNAIRTENSSLTKEVQDLKAK-QNDQVSFASLVEELKKVIHEKDG---KIKSVEELLEAELLKVANKEKTV 831
Cdd:TIGR02169 343 REIEEERKRRDKLTEEYAELKEELEDLRAElEEVDKEFAETRDELKDYREKLEKlkrEINELKRELDRLQEELQRLSEEL 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 832 QDLKQEIKALKEEIGNVQLEKaqqlsitsqvQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHV 911
Cdd:TIGR02169 423 ADLNAAIAGIEAKINELEEEK----------EDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 912 QEVAQHNLKEVSSASQFEELEIVLKEKEN-------ELKRV-EAMLKERESDLSSKTKLLqdVQDENKLFKSQIEQLKQQ 983
Cdd:TIGR02169 493 AEAEAQARASEERVRGGRAVEEVLKASIQgvhgtvaQLGSVgERYATAIEVAAGNRLNNV--VVEDDAVAKEAIELLKRR 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 984 NYQQASSFPpheeLLKV-ISEREKEISGLWNELDSLKDAVEHQRKKNN-------------------------------- 1030
Cdd:TIGR02169 571 KAGRATFLP----LNKMrDERRDLSILSEDGVIGFAVDLVEFDPKYEPafkyvfgdtlvvedieaarrlmgkyrmvtleg 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1031 DLREKNwEAMEALASTEKMLQdKVNKTSKERQQQVEAVELEAKEVLKKLFPKVSVPSNL--SYSEWLHGFEKKAKECMA- 1107
Cdd:TIGR02169 647 ELFEKS-GAMTGGSRAPRGGI-LFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRldELSQELSDASRKIGEIEKe 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1108 GTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKW-KVKVDESHKTIKQMQSSFTSSE 1186
Cdd:TIGR02169 725 IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALnDLEARLSHSRIPEIQAELSKLE 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1187 QELERLRRENKDIEnlrREREHLEMELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETL 1266
Cdd:TIGR02169 805 EEVSRIEARLREIE---QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE 881
|
730 740 750
....*....|....*....|....*....|....
gi 384946988 1267 TKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKA 1300
Cdd:TIGR02169 882 SRLGDLKKERDELEAQLRELERKIEELEAQIEKK 915
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
832-1300 |
5.31e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 5.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 832 QDLKQEIKALKEEIGNVQLEKAQQ--LSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDL--------ANTGKWLQDLQ 901
Cdd:COG4913 265 AAARERLAELEYLRAALRLWFAQRrlELLEAELEELRAELARLEAELERLEARLDALREELdeleaqirGNGGDRLEQLE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 902 EENESLKAHVQEVAQhNLKEVssASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKlfkSQIEQLK 981
Cdd:COG4913 345 REIERLERELEERER-RRARL--EALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAE---AALRDLR 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 982 QQnyqqassfppHEELLKVISEREKEISGLWNELDSLKDAVEHQ-RKKNNDLR-----------EKNWE-AMEALAST-- 1046
Cdd:COG4913 419 RE----------LRELEAEIASLERRKSNIPARLLALRDALAEAlGLDEAELPfvgelievrpeEERWRgAIERVLGGfa 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1047 ---------EKMLQDKVNKTSKERQQQVEAVELEAKEVLKKLFPKVSVPSNLS-----YSEWLHGF-------------- 1098
Cdd:COG4913 489 ltllvppehYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDfkphpFRAWLEAElgrrfdyvcvdspe 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1099 ----EKKA--KECMAGTSGSEEVK----------VL----EHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRsvE 1158
Cdd:COG4913 569 elrrHPRAitRAGQVKGNGTRHEKddrrrirsryVLgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQE--R 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1159 QEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQ 1238
Cdd:COG4913 647 REALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAE 726
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 384946988 1239 KKLDDSYSEAVRQNEELNL-LKAQLNETLTKLRTEQNERQKVA---GDLHKAQQSLELIQSKIVKA 1300
Cdd:COG4913 727 EELDELQDRLEAAEDLARLeLRALLEERFAAALGDAVERELREnleERIDALRARLNRAEEELERA 792
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
349-781 |
7.14e-06 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 50.82 E-value: 7.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 349 AATKDRCKQLTQEMmsEKERSNVVIARmKDRIGTLEKEHNVFQNKihvsyQETQQMQMKFQQVREQMEAEIAHLKQENGI 428
Cdd:PRK10929 19 AATAPDEKQITQEL--EQAKAAKTPAQ-AEIVEALQSALNWLEER-----KGSLERAKQYQQVIDNFPKLSAELRQQLNN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 429 LRDAVSNttnqLESKQSAelNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRKRT 508
Cdd:PRK10929 91 ERDEPRS----VPPNMST--DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 509 AEHEAAQqdlQSKFVAKENEVQSLHSKLtdtlvskQQLEqrLMQLMESeqkrvNKEESLQMQVQDILEQNEALKAQIQQF 588
Cdd:PRK10929 165 TPNTPLA---QAQLTALQAESAALKALV-------DELE--LAQLSAN-----NRQELARLRSELAKKRSQQLDAYLQAL 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 589 HSQIAAQ---------TSASVLAE---ELHKVIAEKDKQIKQTEDSL---ANERDHLTSKE-----EELKDIQNMNFL-- 646
Cdd:PRK10929 228 RNQLNSQrqreaeralESTELLAEqsgDLPKSIVAQFKINRELSQALnqqAQRMDLIASQQrqaasQTLQVRQALNTLre 307
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 647 --------------LKAEVQKLQalaneqaaaahELEKMQQsvyVKDDKIRLLEEQLQHEisnkmeefKILNDQNKALKL 712
Cdd:PRK10929 308 qsqwlgvsnalgeaLRAQVARLP-----------EMPKPQQ---LDTEMAQLRVQRLRYE--------DLLNKQPQLRQI 365
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 384946988 713 EVQKLQTLVSEQpnkdvveqmeKCIQekDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLT---KEVQD 781
Cdd:PRK10929 366 RQADGQPLTAEQ----------NRIL--DAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEdalKEVNE 425
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
296-588 |
8.38e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.61 E-value: 8.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 296 FSEDEALCVVDLLKEKSGVIQDALKKSSKgELTTLVHQLQEKDKLLAAVKEDAAATKDRCKQLTQEMMSEKERSNVVIAR 375
Cdd:pfam12128 597 ASEEELRERLDKAEEALQSAREKQAAAEE-QLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAE 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 376 MKD----RIGTLEKEHNVFQNKIHVSYQETQ--------QMQMKFQQVREQMEAEIAHLKQENGILRDAVSNTTNQLESK 443
Cdd:pfam12128 676 RKDsaneRLNSLEAQLKQLDKKHQAWLEEQKeqkreartEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETW 755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 444 QSAELNKLRQD---YARLVNELTEKTGKLQQEEVQkknaEQAVTQLKVQLQEaerRWEEVQSYIRKRTAEHEAAQQDLQS 520
Cdd:pfam12128 756 YKRDLASLGVDpdvIAKLKREIRTLERKIERIAVR----RQEVLRYFDWYQE---TWLQRRPRLATQLSNIERAISELQQ 828
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 521 KFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQL---MESEQKRVNK------EESLQM-------QVQDILEQNEALKAQ 584
Cdd:pfam12128 829 QLARLIADTKLRRAKLEMERKASEKQQVRLSENlrgLRCEMSKLATlkedanSEQAQGsigerlaQLEDLKLKRDYLSES 908
|
....
gi 384946988 585 IQQF 588
Cdd:pfam12128 909 VKKY 912
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
430-969 |
1.29e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 430 RDAVSNTTNQLESKQSAE----LNKLRQdyarlvnELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQsyir 505
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEKDlherLNGLES-------ELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE---- 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 506 krtaEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEAL---- 581
Cdd:PRK02224 255 ----TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELrdrl 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 582 ---KAQIQQFHSQI-AAQTSASVL---AEELHKVIAEKDKQIKQTEDSLANERDHLTSKEEELKDiqNMNFLLKAEVQkL 654
Cdd:PRK02224 331 eecRVAAQAHNEEAeSLREDADDLeerAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE--LRERFGDAPVD-L 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 655 QALANEQAAAAHELEKMQQSVYVKDDKIRLLE------EQLQHE------------------ISNKMEEFKILNDQNKAL 710
Cdd:PRK02224 408 GNAEDFLEELREERDELREREAELEATLRTARerveeaEALLEAgkcpecgqpvegsphvetIEEDRERVEELEAELEDL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 711 KLEVQKLQTLVSEQpnKDVVEQmEKCIQEKDEKLKTVEELLEtgliqvaTKEEELNAIRTENSSLTKEVQDLKAKQNDQV 790
Cdd:PRK02224 488 EEEVEEVEERLERA--EDLVEA-EDRIERLEERREDLEELIA-------ERRETIEEKRERAEELRERAAELEAEAEEKR 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 791 SFASLVEELKKVIHEKDGKIKSVEELLEAELLKVAnkekTVQDLKQEIKALKEEIGNVQlEKAQQLsitsqvQELQNLLK 870
Cdd:PRK02224 558 EAAAEAEEEAEEAREEVAELNSKLAELKERIESLE----RIRTLLAAIADAEDEIERLR-EKREAL------AELNDERR 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 871 GKEEQMNTMKAVLEEKEKDLAntgkwLQDLQEENESLKAHVQEVAQhNLKEVssASQFEELEIVLKEKENELKRVEAmLK 950
Cdd:PRK02224 627 ERLAEKRERKRELEAEFDEAR-----IEEAREDKERAEEYLEQVEE-KLDEL--REERDDLQAEIGAVENELEELEE-LR 697
|
570
....*....|....*....
gi 384946988 951 ERESDLSSKTKLLQDVQDE 969
Cdd:PRK02224 698 ERREALENRVEALEALYDE 716
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
920-1304 |
1.34e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 920 KEVSSASQFEELEIVLKEKENEL-----KRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQnyqqassfppH 994
Cdd:COG1196 207 RQAEKAERYRELKEELKELEAELlllklRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE----------L 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 995 EELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEkmlqdkvnktskERQQQVEAVELEAKE 1074
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE------------EELEELEEELEELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1075 VLKKLfpkvsvpsnlsysewlhgfekkakecmagtsgSEEVKVLEHKLKEADEmhtLLQLECEKYKSVLAETEGILQKLQ 1154
Cdd:COG1196 345 ELEEA--------------------------------EEELEEAEAELAEAEE---ALLEAEAELAEAEEELEELAEELL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1155 RSVEQEENKwkvkvdesHKTIKQMQSSFTSSEQELERLRREnkdIENLRREREHLEMELEKAEMERSTYVTEVRELKDLL 1234
Cdd:COG1196 390 EALRAAAEL--------AAQLEELEEAEEALLERLERLEEE---LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1235 TELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDI 1304
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV 528
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
442-643 |
1.50e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 442 SKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDL--Q 519
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELeaQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 520 SKFVAKENEVQSLHSKLTDTLV-----SKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAA 594
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALllspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 384946988 595 QTSAsvlAEELHKVIAEKDKQIKQTEDSLANERDHLTSKEEELKDIQNM 643
Cdd:COG4942 183 LEEE---RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
757-983 |
1.53e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 757 QVATKEEELNAIRTENSSLTKEVQDLKAKQndqvsfASLVEELKKVihekDGKIKSVEELLEAELLKVANKEKTVQDLKQ 836
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEE------KALLKQLAAL----ERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 837 EIKALKEEIGNVQLEKAQQLSI---TSQVQELQNLLKGKEeqmntmkavLEEKEKDLANTGKWLQDLQEENESLKAHVQE 913
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRAlyrLGRQPPLALLLSPED---------FLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 914 VAQhnlKEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQ 983
Cdd:COG4942 162 LAA---LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
829-1048 |
1.61e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 829 KTVQDLKQEIKALKEEIGNVQLEKAQQlsiTSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLK 908
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAAL---KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 909 AHVQEVaQHNLKEVSSA----SQFEELEIVLKEKENE--------LKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQ 976
Cdd:COG4942 97 AELEAQ-KEELAELLRAlyrlGRQPPLALLLSPEDFLdavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 384946988 977 IEQLKQQNYQQassfppHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEK 1048
Cdd:COG4942 176 LEALLAELEEE------RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1113-1352 |
2.01e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 2.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1113 EEVKVLEHKLKEADEMHTLLQLEceKYKSVLAETEGILQKLQRSVEQEEnkwkVKVDESHKTIKQMQSSFTSSEQELERL 1192
Cdd:COG1196 213 ERYRELKEELKELEAELLLLKLR--ELEAELEELEAELEELEAELEELE----AELAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1193 RrenKDIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTE 1272
Cdd:COG1196 287 Q---AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1273 QNERQKVAGDLHKAQQSLELIQSKIVKAAGDITVIENSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKEKEH 1352
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
482-1288 |
2.34e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.20 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 482 AVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKfvAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRV 561
Cdd:pfam02463 163 AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKL--KEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERID 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 562 NKEESLQMQVQDILEQNealkaQIQQFHSQIAAQTSASVLAEElhKVIAEKDKQIKQTEDSLANERDHLTSKEEELKDIQ 641
Cdd:pfam02463 241 LLQELLRDEQEEIESSK-----QEIEKEEEKLAQVLKENKEEE--KEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 642 NMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKddkirllEEQLQHEISNKMEEFKILNDQNKALKLEVQKLQTLV 721
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIK-------REAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 722 SEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASL----VE 797
Cdd:pfam02463 387 SSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLlkdeLE 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 798 ELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSITSQVQELQNLLKGKEEQMN 877
Cdd:pfam02463 467 LKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIS 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 878 TMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKEVSSASQFEELEIVLKEKENE--LKRVEAMLKERESD 955
Cdd:pfam02463 547 TAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKatLEADEDDKRAKVVE 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 956 LSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREK 1035
Cdd:pfam02463 627 GILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQ 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1036 NWEAMEALASTEKMLQDKVNKTSKERQQQVEAVELEAKEVLKKLFPKVSVPSNLSYSEWLHGFEKKAKECMAGTSGSEEV 1115
Cdd:pfam02463 707 REKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKL 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1116 KVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRRE 1195
Cdd:pfam02463 787 KVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKE 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1196 NKDIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTEQNE 1275
Cdd:pfam02463 867 ELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEAD 946
|
810
....*....|...
gi 384946988 1276 RQKVAGDLHKAQQ 1288
Cdd:pfam02463 947 EKEKEENNKEEEE 959
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
757-1311 |
2.65e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 2.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 757 QVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVS----FASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQ 832
Cdd:TIGR04523 111 EIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTeikkKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNID 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 833 DLKQEIKALKEEIGNVQLEKAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENE----SLK 908
Cdd:TIGR04523 191 KIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNkikkQLS 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 909 AHVQEVAQHNLKEVSSASQFEELEIVLKEKENElkRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQ----N 984
Cdd:TIGR04523 271 EKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ--KEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQisqlK 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 985 YQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKnweamealastekmlQDKVNKTSKERQQQ 1064
Cdd:TIGR04523 349 KELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESK---------------IQNQEKLNQQKDEQ 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1065 VEAVELEaKEVLKKLFPKVSVPSNLSYSEWLHGFEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLA 1144
Cdd:TIGR04523 414 IKKLQQE-KELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELK 492
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1145 ETEGILQKLQRSVEQEENKWKV---KVDESHKTIKQMQSSFTSSEQELERLRRE------NKDIENLRREREHLEMELEK 1215
Cdd:TIGR04523 493 SKEKELKKLNEEKKELEEKVKDltkKISSLKEKIEKLESEKKEKESKISDLEDElnkddfELKKENLEKEIDEKNKEIEE 572
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1216 AEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQS 1295
Cdd:TIGR04523 573 LKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKE 652
|
570
....*....|....*.
gi 384946988 1296 KIVKAAGDITVIENSD 1311
Cdd:TIGR04523 653 TIKEIRNKWPEIIKKI 668
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
730-1073 |
2.81e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 2.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 730 VEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKeVQDLKAKQND--QVSFASLVEELKKVIHEKD 807
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER-YQALLKEKREyeGYELLKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 808 GKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEI----GNVQLE-KAQQLSITSQVQELQNLLKGKEEQMntmkav 882
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIkdlgEEEQLRvKEKIGELEAEIASLERSIAEKEREL------ 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 883 lEEKEKDLANTGKWLQDLQEENESLKahvQEVAQHNLKEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKL 962
Cdd:TIGR02169 318 -EDAEERLAKLEAEIDKLLAEIEELE---REIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 963 LQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEA 1042
Cdd:TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473
|
330 340 350
....*....|....*....|....*....|.
gi 384946988 1043 LASTekmlQDKVNKTSKERQQQVEAVELEAK 1073
Cdd:TIGR02169 474 LKEE----YDRVEKELSKLQRELAEAEAQAR 500
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
305-1343 |
2.99e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.89 E-value: 2.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 305 VDLLK--EKSGVIQDALKKSSKGELTtlvHQLQEKDKLLAAVKEDAAAT-KDRCKQLTQEMMSEKERSNVVIARMKDRIG 381
Cdd:TIGR01612 623 IDLKKiiENNNAYIDELAKISPYQVP---EHLKNKDKIYSTIKSELSKIyEDDIDALYNELSSIVKENAIDNTEDKAKLD 699
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 382 TLekehnvfQNKIHVSYQETQQMQMkfqqvrEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDYARLVNE 461
Cdd:TIGR01612 700 DL-------KSKIDKEYDKIQNMET------ATVELHLSNIENKKNELLDIIVEIKKHIHGEINKDLNKILEDFKNKEKE 766
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 462 LTEKTGKLQQEEVQKKNAEQAVTQLKVQL-----------QEAERRWEEVQSYIR----------KRTAEHEAAQQDLQS 520
Cdd:TIGR01612 767 LSNKINDYAKEKDELNKYKSKISEIKNHYndqinidnikdEDAKQNYDKSKEYIKtisikedeifKIINEMKFMKDDFLN 846
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 521 K---FVAKEN----EVQSLHSKLTDtLVSKQQLEQRLMQLMESEqKRVNKEESLqmqvqdILEQNEALKAQIQQFHSQia 593
Cdd:TIGR01612 847 KvdkFINFENnckeKIDSEHEQFAE-LTNKIKAEISDDKLNDYE-KKFNDSKSL------INEINKSIEEEYQNINTL-- 916
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 594 aqtsasvlaeelhKVIAEKDKQIKQTEDSLANERDHLTSKEEEL----KDIQNMNFLLKAEVQKLQALANEQAAaahELE 669
Cdd:TIGR01612 917 -------------KKVDEYIKICENTKESIEKFHNKQNILKEILnkniDTIKESNLIEKSYKDKFDNTLIDKIN---ELD 980
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 670 KMqqsvyvkddkirLLEEQLQHEISNKMEEFKILNDQNKalKLEVQKLQTLVSE-QPNKDVVEQMEKCIQEKDEKLKTVE 748
Cdd:TIGR01612 981 KA------------FKDASLNDYEAKNNELIKYFNDLKA--NLGKNKENMLYHQfDEKEKATNDIEQKIEDANKNIPNIE 1046
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 749 ELLETGLIQVAtkEEELNAIRTENSSLTKEVqdLKAKQNDQVSFASLVEELKkvIHEKDGKIKSVEELLEAELLKVANKE 828
Cdd:TIGR01612 1047 IAIHTSIYNII--DEIEKEIGKNIELLNKEI--LEEAEINITNFNEIKEKLK--HYNFDDFGKEENIKYADEINKIKDDI 1120
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 829 KTV-QDLKQEIKALkEEIGNVQLEKAQQlsITSQVQELQNL---------LKGKEEQMNTMKAVLEEKEKDLANTGKWLQ 898
Cdd:TIGR01612 1121 KNLdQKIDHHIKAL-EEIKKKSENYIDE--IKAQINDLEDVadkaisnddPEEIEKKIENIVTKIDKKKNIYDEIKKLLN 1197
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 899 DLQEEnESLKAHVQEVAQHNLKEVSSASQF--EELEIVLKEKENELKRVEAML------KERESDLSSKTKLLQDVQDEN 970
Cdd:TIGR01612 1198 EIAEI-EKDKTSLEEVKGINLSYGKNLGKLflEKIDEEKKKSEHMIKAMEAYIedldeiKEKSPEIENEMGIEMDIKAEM 1276
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 971 KLF------------------------KSQIEQLKQQNYQQASSFPPHEELLKVISEREK----------EISGLWN--E 1014
Cdd:TIGR01612 1277 ETFnishdddkdhhiiskkhdenisdiREKSLKIIEDFSEESDINDIKKELQKNLLDAQKhnsdinlylnEIANIYNilK 1356
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1015 LDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQD-KVNKTSKERQQQVEAVeLEAKEVlKKLFPKVSVPSN--LSY 1091
Cdd:TIGR01612 1357 LNKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKiKDDINLEECKSKIEST-LDDKDI-DECIKKIKELKNhiLSE 1434
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1092 SEWLHGFEKKAKEcmagtsGSEEVKVLEHKLKEADEmHTLLQLECEKYKSVlAETEGILQKLQRSVEQEeNKWKVKVDES 1171
Cdd:TIGR01612 1435 ESNIDTYFKNADE------NNENVLLLFKNIEMADN-KSQHILKIKKDNAT-NDHDFNINELKEHIDKS-KGCKDEADKN 1505
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1172 HKTIKQMQSSFTSSEQELERLRRENKDIEnlrrerehLEMELEKAEMERSTYVTEVRELKDLLTelqkklddsySEAVRQ 1251
Cdd:TIGR01612 1506 AKAIEKNKELFEQYKKDVTELLNKYSALA--------IKNKFAKTKKDSEIIIKEIKDAHKKFI----------LEAEKS 1567
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1252 NEELNLLKAQlNETLTKLRTEQNERQKVAGDLhkaQQSLELIQSKIVKAAgDITVIENsDVSPETESSEKETMSVSLNQT 1331
Cdd:TIGR01612 1568 EQKIKEIKKE-KFRIEDDAAKNDKSNKAAIDI---QLSLENFENKFLKIS-DIKKKIN-DCLKETESIEKKISSFSIDSQ 1641
|
1130
....*....|..
gi 384946988 1332 VTQLQQLLQAVN 1343
Cdd:TIGR01612 1642 DTELKENGDNLN 1653
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1190-1357 |
3.61e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 3.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1190 ERLRRENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKL 1269
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1270 RTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDITVIENSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKE 1349
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
....*...
gi 384946988 1350 KEHYQVLE 1357
Cdd:COG1196 399 AAQLEELE 406
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
825-953 |
3.66e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.85 E-value: 3.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 825 ANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLsitsqvQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEEN 904
Cdd:PRK12704 53 AIKKEALLEAKEEIHKLRNEFEKELRERRNEL------QKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQEL 126
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 384946988 905 ESLKAHVQE-VAQHN--LKEVSSASQFEELEIVLKEKENELKR-VEAMLKERE 953
Cdd:PRK12704 127 EKKEEELEElIEEQLqeLERISGLTAEEAKEILLEKVEEEARHeAAVLIKEIE 179
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
319-891 |
4.28e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 48.30 E-value: 4.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 319 LKKSSKGELTTLVHQLQEKDKLLAAVKEDAAATKDRCKQLTQEMMSEKERSNVVIARMKDRIGTLEKEHNVFQNKIHVSY 398
Cdd:pfam12128 263 LHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETA 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 399 QETQQMQMKFQQVREQMEAEIAHLKQENGilrdAVSNTTNQLESKQSAELNKlrqDYARLVNEL-TEKTGKLQQEEVQKK 477
Cdd:pfam12128 343 AADQEQLPSWQSELENLEERLKALTGKHQ----DVTAKYNRRRSKIKEQNNR---DIAGIKDKLaKIREARDRQLAVAED 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 478 NAEQAVTQLKVQLQEAERRWEEVQSYIRKRTAEHE------AAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLM 551
Cdd:pfam12128 416 DLQALESELREQLEAGKLEFNEEEYRLKSRLGELKlrlnqaTATPELLLQLENFDERIERAREEQEAANAEVERLQSELR 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 552 QLmesEQKRVNKEESLQMQVQDILEQNEALKAQIQQF----HSQIA-AQTSASVLAEELHKVIA-----------EKDKQ 615
Cdd:pfam12128 496 QA---RKRRDQASEALRQASRRLEERQSALDELELQLfpqaGTLLHfLRKEAPDWEQSIGKVISpellhrtdldpEVWDG 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 616 IKQTEDSLANERDHLtsKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISN 695
Cdd:pfam12128 573 SVGGELNLYGVKLDL--KRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKN 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 696 KMEEFKILNDQNKALKLEVQklQTLVSEQpnKDVVEQMEKCIQEKDEKLKTVEELLEtgliqvATKEEELNAiRTENSSL 775
Cdd:pfam12128 651 ARLDLRRLFDEKQSEKDKKN--KALAERK--DSANERLNSLEAQLKQLDKKHQAWLE------EQKEQKREA-RTEKQAY 719
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 776 TKEVQDLKAKQndqvsFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQ 855
Cdd:pfam12128 720 WQVVEGALDAQ-----LALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEV 794
|
570 580 590
....*....|....*....|....*....|....*..
gi 384946988 856 LSITSQVQELQNLLKGK-EEQMNTMKAVLEEKEKDLA 891
Cdd:pfam12128 795 LRYFDWYQETWLQRRPRlATQLSNIERAISELQQQLA 831
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
530-1210 |
6.60e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 6.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 530 QSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVI 609
Cdd:TIGR00618 190 KSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARI 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 610 AEKDKQIKQTEDSLA--NERDHLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEE 687
Cdd:TIGR00618 270 EELRAQEAVLEETQEriNRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQT 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 688 QLQHEISNKMEefkilndQNKALKLEVQKLQTLVSEQPNKDVVEQMEKCIQekdeKLKTVEELLETGLIQVATKEEELNA 767
Cdd:TIGR00618 350 LHSQEIHIRDA-------HEVATSIREISCQQHTLTQHIHTLQQQKTTLTQ----KLQSLCKELDILQREQATIDTRTSA 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 768 IRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKE---KTVQDLKQEIKALKEE 844
Cdd:TIGR00618 419 FRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEqihLQETRKKAVVLARLLE 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 845 IGNVQLEKAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKEVSS 924
Cdd:TIGR00618 499 LQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQC 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 925 ASQF-EELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDE-NKLFKSQIEQLKQQNYQQASSfPPHEELLKVIS 1002
Cdd:TIGR00618 579 DNRSkEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEqDLQDVRLHLQQCSQELALKLT-ALHALQLTLTQ 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1003 EREKEISGLWNELDSLK--------DAVEHQRKKNNDLREKNWEAMEALASTEKMLQD------KVNKTSKERQQQVEAV 1068
Cdd:TIGR00618 658 ERVREHALSIRVLPKELlasrqlalQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEydrefnEIENASSSLGSDLAAR 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1069 ELEAKEVLKKLFPKVSVPSNLSYSEWLHGFEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEG 1148
Cdd:TIGR00618 738 EDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDED 817
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 384946988 1149 ILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIENLRREREHLE 1210
Cdd:TIGR00618 818 ILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLN 879
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
730-1322 |
7.67e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 47.38 E-value: 7.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 730 VEQMEKCIQEKDEKLKTVEELLETG--LIQVAT--KEEELNAIRTENSSLTKEVQDLK-AKQNDQVSFASL--VEELKKV 802
Cdd:COG5022 877 VELAERQLQELKIDVKSISSLKLVNleLESEIIelKKSLSSDLIENLEFKTELIARLKkLLNNIDLEEGPSieYVKLPEL 956
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 803 --IHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGnvqlekaqqlSITSQVQELQNLLKGKEEqMNTMK 880
Cdd:COG5022 957 nkLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELA----------ELSKQYGALQESTKQLKE-LPVEV 1025
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 881 AVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNlKEVSSASQFEELEIVLKEKENELKRVEAMLKE-RESDLSSK 959
Cdd:COG5022 1026 AELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQ-ARYKALKLRRENSLLDDKQLYQLESTENLLKTiNVKDLEVT 1104
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 960 TKLLqdVQDENKLFKSQIEQLKQQNYQQASSFPPheELLKVISEREKEISGLWNELDSLKDAvehqrkknNDLREKNWEA 1039
Cdd:COG5022 1105 NRNL--VKPANVLQFIVAQMIKLNLLQEISKFLS--QLVNTLEPVFQKLSVLQLELDGLFWE--------ANLEALPSPP 1172
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1040 MEALASTEKMLQDKVNKT-SKERQQQVEAVELEAKEVLKKlfpkvsvpsnlSYSEWLHGFEKK--AKECMAGTSGSEevk 1116
Cdd:COG5022 1173 PFAALSEKRLYQSALYDEkSKLSSSEVNDLKNELIALFSK-----------IFSGWPRGDKLKklISEGWVPTEYST--- 1238
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1117 vlehKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTS---SEQELERLR 1193
Cdd:COG5022 1239 ----SLKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRtkaSSLRWKSAT 1314
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1194 RENKDIENL-----RREREHLEMELEkaEMERSTYVTEVRelKDLLTELQKKLDDSYSEavrQNEELNLLKAQLNETLTK 1268
Cdd:COG5022 1315 EVNYNSEELddwcrEFEISDVDEELE--ELIQAVKVLQLL--KDDLNKLDELLDACYSL---NPAEIQNLKSRYDPADKE 1387
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 384946988 1269 LRTEQNERQKVAGDLHKAQQSLE-LIQSKIVKAAGDITVIENSDVSPETESSEKE 1322
Cdd:COG5022 1388 NNLPKEILKKIEALLIKQELQLSlEGKDETEVHLSEIFSEEKSLISLDRNSIYKE 1442
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
826-1049 |
8.18e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 47.23 E-value: 8.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 826 NKEKTVQDLKQ----EIKALKEEIGNVQLEKAQQLSIT-----SQVQELQNLLKGKEEQMNTMK-----AVLEEKEKDLA 891
Cdd:PRK05771 17 YKDEVLEALHElgvvHIEDLKEELSNERLRKLRSLLTKlsealDKLRSYLPKLNPLREEKKKVSvksleELIKDVEEELE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 892 NTGKWLQDLQEENESLKAHVQEVaQHNLKEVSSASQFEELEIVLKEKEN---ELKRVEAMLKERESDLSSKTKLLQDVQD 968
Cdd:PRK05771 97 KIEKEIKELEEEISELENEIKEL-EQEIERLEPWGNFDLDLSLLLGFKYvsvFVGTVPEDKLEELKLESDVENVEYISTD 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 969 ENKLF----------KSQIEQLKQQNYQQASsFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDL------ 1032
Cdd:PRK05771 176 KGYVYvvvvvlkelsDEVEEELKKLGFERLE-LEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEEllalye 254
|
250 260
....*....|....*....|..
gi 384946988 1033 -----REKNwEAMEALASTEKM 1049
Cdd:PRK05771 255 yleieLERA-EALSKFLKTDKT 275
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
389-1011 |
1.19e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 46.74 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 389 VFQNKIHVSYQETQQMQMKFQQVREQMEA--EIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDYARLVNEL---- 462
Cdd:pfam10174 57 VLKEQYRVTQEENQHLQLTIQALQDELRAqrDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQAKELfllr 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 463 ------------TEKTGKLQQEEVQK-----------KNAEQAVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQ 519
Cdd:pfam10174 137 ktleemelrietQKQTLGARDESIKKllemlqskglpKKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELH 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 520 SKF-VAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQM-QVQDILEQNEA-------LKAQIQQFHS 590
Cdd:pfam10174 217 RRNqLQPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLHTeDREEEIKQMEVykshskfMKNKIDQLKQ 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 591 QIAAQTSASVLAEELHKVIAEKDKQIKQTEDSLaneRDHLTSKEEELKDIQN-----------MNFLLKAEVQKLQALAN 659
Cdd:pfam10174 297 ELSKKESELLALQTKLETLTNQNSDCKQHIEVL---KESLTAKEQRAAILQTevdalrlrleeKESFLNKKTKQLQDLTE 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 660 EQAAAAHELEKMQQSVYVKDDKIRLleeqLQHEISNKMEEFKILNDQNKALKLEVQKLQTlvsEQPNKD-VVEQMEKCIQ 738
Cdd:pfam10174 374 EKSTLAGEIRDLKDMLDVKERKINV----LQKKIENLQEQLRDKDKQLAGLKERVKSLQT---DSSNTDtALTTLEEALS 446
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 739 EKDeklKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVEE----LKKVIHEKDGKIKSVE 814
Cdd:pfam10174 447 EKE---RIIERLKEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEhassLASSGLKKDSKLKSLE 523
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 815 ----------ELLEAELLKVANKEKT----------VQDLKQEIKALKEEIGNVQLEKAQQLSITSQVQELQNLlkgKEE 874
Cdd:pfam10174 524 iaveqkkeecSKLENQLKKAHNAEEAvrtnpeindrIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKND---KDK 600
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 875 QMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVA---QHNLKEVSSASQFEELEIVLKEKENELKRVEAMLKE 951
Cdd:pfam10174 601 KIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEArrrEDNLADNSQQLQLEELMGALEKTRQELDATKARLSS 680
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 952 RESDLSSKTKLLQDVQDENKLFKSQIEQLKQqnyqqassfpphEELLKVISEREKEISGL 1011
Cdd:pfam10174 681 TQQSLAEKDGHLTNLRAERRKQLEEILEMKQ------------EALLAAISEKDANIALL 728
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
411-641 |
1.30e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 1.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 411 VREQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDyarlvNELTEKTGKLQQEEVQKKNAEQAVTQLKVQL 490
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE-AALEEFRQK-----NGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 491 QEAERRWEEVQSYIRKRTAEHEAAQQDlqskfvakeNEVQSLHSKLtdtlvskQQLEQRLMQLmeseQKRVNKEESlqmQ 570
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELLQS---------PVIQQLRAQL-------AELEAELAEL----SARYTPNHP---D 292
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 384946988 571 VQDILEQNEALKAQIQQFHSQIAAQTSASVlaeelhKVIAEKDKQIKQTEDSLANERDHLTSKEEELKDIQ 641
Cdd:COG3206 293 VIALRAQIAALRAQLQQEAQRILASLEAEL------EALQAREASLQAQLAQLEARLAELPELEAELRRLE 357
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1123-1357 |
1.88e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1123 KEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENK----- 1197
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAkleae 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1198 ------DIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRT 1271
Cdd:TIGR02169 331 idkllaEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1272 EQNERQKVAGDLHKAQQSLELIQSKIVKAAGDITVIENSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKEKE 1351
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
....*.
gi 384946988 1352 HYQVLE 1357
Cdd:TIGR02169 491 ELAEAE 496
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
685-1020 |
2.31e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.81 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 685 LEEQLQHEISNKMEEFKILNDQNKALKLEVQKLQtlvsEQPNKDVVeQMEKCIQEK-DEKLKTVEELLETGLIQVATKEE 763
Cdd:TIGR01612 534 IKAKLYKEIEAGLKESYELAKNWKKLIHEIKKEL----EEENEDSI-HLEKEIKDLfDKYLEIDDEIIYINKLKLELKEK 608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 764 ELNaIRTENSSLTKEVqdlkakqndqvsfaslveELKKVIHEKDGKIKSVEELLEAELLK-VANKEKTVQDLKQEikalk 842
Cdd:TIGR01612 609 IKN-ISDKNEYIKKAI------------------DLKKIIENNNAYIDELAKISPYQVPEhLKNKDKIYSTIKSE----- 664
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 843 eeignvqLEKAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLqeENESLKAHVQEVaqHNLKEV 922
Cdd:TIGR01612 665 -------LSKIYEDDIDALYNELSSIVKENAIDNTEDKAKLDDLKSKIDKEYDKIQNM--ETATVELHLSNI--ENKKNE 733
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 923 SSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQAS-----------SF 991
Cdd:TIGR01612 734 LLDIIVEIKKHIHGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINidnikdedakqNY 813
|
330 340
....*....|....*....|....*....
gi 384946988 992 PPHEELLKVISEREKEISGLWNELDSLKD 1020
Cdd:TIGR01612 814 DKSKEYIKTISIKEDEIFKIINEMKFMKD 842
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1113-1357 |
2.87e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 2.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1113 EEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERL 1192
Cdd:COG1196 260 AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1193 RRENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTE 1272
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1273 QNERQKVAGDLHKAQQSLELIQSKIVKAAGDITVIensdvspETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKEKEH 1352
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAEL-------EEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
....*
gi 384946988 1353 YQVLE 1357
Cdd:COG1196 493 LLLLL 497
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
970-1259 |
3.83e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.62 E-value: 3.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 970 NKLFKSQIEQLKQQnyqqassfppheellkvISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKM 1049
Cdd:PHA02562 169 DKLNKDKIRELNQQ-----------------IQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKT 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1050 LQDKVNktskERQQQVEAVELEAKEV---LKKLFPK-VSVPSNLSYSEWLHGFEKKAKECMAGTSGseevkvlehkLKEA 1125
Cdd:PHA02562 232 IKAEIE----ELTDELLNLVMDIEDPsaaLNKLNTAaAKIKSKIEQFQKVIKMYEKGGVCPTCTQQ----------ISEG 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1126 DEMhtllqleCEKYKSVLAETEGILQKLQRSVEQEENKwKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIENlrre 1205
Cdd:PHA02562 298 PDR-------ITKIKDKLKELQHSLEKLDTAIDELEEI-MDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKA---- 365
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 384946988 1206 rehlemELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLK 1259
Cdd:PHA02562 366 ------AIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLK 413
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
668-1291 |
5.00e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.65 E-value: 5.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 668 LEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEfKILNDQNKALKLEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTV 747
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEEKEEKDLHERLNGLES-ELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 748 EELLETgliqVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLveelkkviheKDGKIKSVEELLEAELLKVANK 827
Cdd:PRK02224 261 EDLRET----IAETEREREELAEEVRDLRERLEELEEERDDLLAEAGL----------DDADAEAVEARREELEDRDEEL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 828 EKTVQDLKQEIKALKEEIGnvqlekaqqlSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESL 907
Cdd:PRK02224 327 RDRLEECRVAAQAHNEEAE----------SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 908 KAHVQEvaqhnlkevsSASQFEELEIVLKEKENELKRVEAMLKERESDLSSktklLQDVQDENKLFksqIEQLKQQNYQQ 987
Cdd:PRK02224 397 RERFGD----------APVDLGNAEDFLEELREERDELREREAELEATLRT----ARERVEEAEAL---LEAGKCPECGQ 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 988 ASSFPPHEEllkVISEREKEISGLWNELDSLKDAVEHqrkknndlREKNWEAMEALASTEKMLQdkvnkTSKERQQQVEA 1067
Cdd:PRK02224 460 PVEGSPHVE---TIEEDRERVEELEAELEDLEEEVEE--------VEERLERAEDLVEAEDRIE-----RLEERREDLEE 523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1068 VELEAKEvlkklfpkvsvpsnlsysewlhGFEKKAKECmagTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETE 1147
Cdd:PRK02224 524 LIAERRE----------------------TIEEKRERA---EELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1148 GILQKLQRSVEQeenkwkvkvdeshktikqmqssftsseqeLERLRRENKDIENLRREREHLEMELE-KAEM--ERSTYV 1224
Cdd:PRK02224 579 SKLAELKERIES-----------------------------LERIRTLLAAIADAEDEIERLREKREaLAELndERRERL 629
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 384946988 1225 TEVRELKDlltELQKKLDDSYSEAVRQN-EELNLLKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLE 1291
Cdd:PRK02224 630 AEKRERKR---ELEAEFDEARIEEAREDkERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELE 694
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
377-556 |
5.47e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 5.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 377 KDRIGTLEKEHNVFQNKIHVSYQETQQMQMKFQQVREQMEA-------------------EIAHLKQEngilRDAVSNTT 437
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAlqrlaeyswdeidvasaerEIAELEAE----LERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 438 NQLESKQsAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYI---RKRTAEHEAA 514
Cdd:COG4913 685 DDLAALE-EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALleeRFAAALGDAV 763
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 384946988 515 QQDLQSKFvakENEVQSLHSKLtdtlvskQQLEQRLMQLMES 556
Cdd:COG4913 764 ERELRENL---EERIDALRARL-------NRAEEELERAMRA 795
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
829-1297 |
5.67e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 5.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 829 KTVQDLKQEIKALKEEIgnvqlekAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENEslk 908
Cdd:COG4717 64 RKPELNLKELKELEEEL-------KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQE--- 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 909 ahvqevaqhnlkevssasqFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQa 988
Cdd:COG4717 134 -------------------LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEE- 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 989 ssfppheellkvISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKnweamEALASTEKMLQDKVNKTSKERQQQVEAV 1068
Cdd:COG4717 194 ------------LQDLAEELEELQQRLAELEEELEEAQEELEELEEE-----LEQLENELEAAALEERLKEARLLLLIAA 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1069 ELEAKEVLKKLFPKVSVP------SNLSYSEWLHGFEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTLLQL---ECEKY 1139
Cdd:COG4717 257 ALLALLGLGGSLLSLILTiagvlfLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALglpPDLSP 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1140 KSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQ-MQSSFTSSEQELERLRRENKDIENLRREREHLEMELEKA-- 1216
Cdd:COG4717 337 EELLELLDRIEELQELLREAEELEEELQLEELEQEIAAlLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELlg 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1217 EMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNE-----TLTKLRTEQNERQKVAGDLHKAQQSLE 1291
Cdd:COG4717 417 ELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQleedgELAELLQELEELKAELRELAEEWAALK 496
|
....*.
gi 384946988 1292 LIQSKI 1297
Cdd:COG4717 497 LALELL 502
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
412-621 |
5.69e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 44.44 E-value: 5.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 412 REQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDY-------ARLVN-ELTEKTGKLQQEEVQKKNAEQAV 483
Cdd:NF012221 1564 KERAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETNGQAQrdaileeSRAVTkELTTLAQGLDALDSQATYAGESG 1643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 484 TQLKVQLqeAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKlTDTLVskQQLEQRLMQLMESEQKRVNK 563
Cdd:NF012221 1644 DQWRNPF--AGGLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDAVAK-SEAGV--AQGEQNQANAEQDIDDAKAD 1718
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 384946988 564 EESLQMQVqdILEQNEALKAQIQQFHS----QIAAQTSASVLAEELHKVIAEKdKQIKQTED 621
Cdd:NF012221 1719 AEKRKDDA--LAKQNEAQQAESDANAAandaQSRGEQDASAAENKANQAQADA-KGAKQDES 1777
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
824-1242 |
7.28e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 7.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 824 VANKEKTVQDLKQEIKALKEEIGNVQL---EKAQQLSITS----QVQELQNLLKGKEEQMNTMKAV-LEEKEKDLANTGK 895
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLiidEKRQQLERLRrereKAERYQALLKEKREYEGYELLKeKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 896 WLQDLQEENESLKAHVQEVAQhnlkevssasQFEELEIVLKEKENELKRV----EAMLKERESDLSSKTKLLQDVQDENK 971
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEK----------RLEEIEQLLEELNKKIKDLgeeeQLRVKEKIGELEAEIASLERSIAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 972 lfksqiEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKnweaMEALASTEKMLQ 1051
Cdd:TIGR02169 315 ------RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE----LEEVDKEFAETR 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1052 DKVnktsKERQQQVEAVELEAKEVLKKLFPKVsvpsnlsysewlhgfEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTL 1131
Cdd:TIGR02169 385 DEL----KDYREKLEKLKREINELKRELDRLQ---------------EELQRLSEELADLNAAIAGIEAKINELEEEKED 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1132 LQLECEKyksvlaetegilqklqrsveQEENkwkvkvdeshktIKQMQSSFTSSEQELERLRRENKDIEnlrREREHLEM 1211
Cdd:TIGR02169 446 KALEIKK--------------------QEWK------------LEQLAADLSKYEQELYDLKEEYDRVE---KELSKLQR 490
|
410 420 430
....*....|....*....|....*....|.
gi 384946988 1212 ELEKAEMERSTYVTEVRELKDLLTELQKKLD 1242
Cdd:TIGR02169 491 ELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1142-1351 |
8.01e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 8.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1142 VLAETEGILQKLQRSVEQEENKWKVKVDESHKtikQMQSSFTSSEQELERLRRENKDIENLRREREHLEMELEKAEmers 1221
Cdd:TIGR02168 194 ILNELERQLKSLERQAEKAERYKELKAELREL---ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELE---- 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1222 tyvTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAA 1301
Cdd:TIGR02168 267 ---EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELE 343
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 384946988 1302 GDITVIENSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKEKE 1351
Cdd:TIGR02168 344 EKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
825-967 |
8.49e-04 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 43.70 E-value: 8.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 825 ANKEKTVQDLKQEIKALKEEIGNVQLEKAQQL-SITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEE 903
Cdd:PRK00106 68 ALKKELLLEAKEEARKYREEIEQEFKSERQELkQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQ 147
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 384946988 904 NESLkahvQEVAQHNLKEVSSASQFEELEIVLKEKENEL--------KRVEAMLKEReSDLSSKTKLLQDVQ 967
Cdd:PRK00106 148 VEKL----EEQKKAELERVAALSQAEAREIILAETENKLtheiatriREAEREVKDR-SDKMAKDLLAQAMQ 214
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
468-638 |
8.72e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 8.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 468 KLQQEEVQKKNAEQaVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSkfvakENEVQSLHskltdtlvskQQLE 547
Cdd:PRK04863 501 LLRRLREQRHLAEQ-LQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDD-----EDELEQLQ----------EELE 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 548 QRLMQLmeSEQKRVNKEEslQMQVQDILEQneaLKAQIQQFHSQ----IAAQTSASVLAEELHKVIAEK---DKQIKQT- 619
Cdd:PRK04863 565 ARLESL--SESVSEARER--RMALRQQLEQ---LQARIQRLAARapawLAAQDALARLREQSGEEFEDSqdvTEYMQQLl 637
|
170 180
....*....|....*....|.
gi 384946988 620 --EDSLANERDHLTSKEEELK 638
Cdd:PRK04863 638 erERELTVERDELAARKQALD 658
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
929-1026 |
9.24e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.61 E-value: 9.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 929 EELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQassfppHEELLKVISEREKE- 1007
Cdd:PRK12704 71 NEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKK------EEELEELIEEQLQEl 144
|
90 100
....*....|....*....|....*..
gi 384946988 1008 --ISGLWNE------LDSLKDAVEHQR 1026
Cdd:PRK12704 145 erISGLTAEeakeilLEKVEEEARHEA 171
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
731-1023 |
9.50e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.76 E-value: 9.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 731 EQMEK--CIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTEN-SSLTKEVQDLKAKQNDQVSFASLVEELKKVIhekd 807
Cdd:PRK05771 4 VRMKKvlIVTLKSYKDEVLEALHELGVVHIEDLKEELSNERLRKlRSLLTKLSEALDKLRSYLPKLNPLREEKKKV---- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 808 gKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSITSQVQELQNLLKGKeeqmnTMKAVLEEKE 887
Cdd:PRK05771 80 -SVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFK-----YVSVFVGTVP 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 888 KDlantgkwlQDLQEENESLKAHVQEVAQHNLKE----VSSASQFEELEIVLkeKENELKRVEAmlkereSDLSSKTKLL 963
Cdd:PRK05771 154 ED--------KLEELKLESDVENVEYISTDKGYVyvvvVVLKELSDEVEEEL--KKLGFERLEL------EEEGTPSELI 217
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 964 QDVQDENKLFKSQIEQLKqqnyqqassfpphEELLKVISEREKEISGLWNELDSLKDAVE 1023
Cdd:PRK05771 218 REIKEELEEIEKERESLL-------------EELKELAKKYLEELLALYEYLEIELERAE 264
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
561-1065 |
1.09e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 561 VNKEESLQMQVQDILEQNEALKAQIQQF-HSQIAAQTSASvlAEELHKVIAEKDKQIKQTEDSLANERDHLTSKEEELKD 639
Cdd:COG4717 15 RDRTIEFSPGLNVIYGPNEAGKSTLLAFiRAMLLERLEKE--ADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 640 IQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQsVYVKDDKIRLLEEQLQH------EISNKMEEFKILNDQNKALKLE 713
Cdd:COG4717 93 LQEELEELEEELEELEAELEELREELEKLEKLLQ-LLPLYQELEALEAELAElperleELEERLEELRELEEELEELEAE 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 714 VQKLQTLVSEQPNkDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQ---- 789
Cdd:COG4717 172 LAELQEELEELLE-QLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKearl 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 790 --------VSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLE-----KAQQL 856
Cdd:COG4717 251 llliaaalLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEEleellAALGL 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 857 SITSQVQELQNLLKgKEEQMNTMKAVLEEKEKDLAntgkwLQDLQEENESLKAHVQevaqhnlkeVSSASQFEELEIVLK 936
Cdd:COG4717 331 PPDLSPEELLELLD-RIEELQELLREAEELEEELQ-----LEELEQEIAALLAEAG---------VEDEEELRAALEQAE 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 937 EKENELKRVEAMLKERESDLSSKTKLLQDVQDENklFKSQIEQLKQqnyQQASSFPPHEELLKVISEREKEISGLWN--E 1014
Cdd:COG4717 396 EYQELKEELEELEEQLEELLGELEELLEALDEEE--LEEELEELEE---ELEELEEELEELREELAELEAELEQLEEdgE 470
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 384946988 1015 LDSLKDAVEHQRKKNNDLREKNweamEALASTEKMLQDKVNKTSKERQQQV 1065
Cdd:COG4717 471 LAELLQELEELKAELRELAEEW----AALKLALELLEEAREEYREERLPPV 517
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
774-1308 |
1.50e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.97 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 774 SLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIK---ALKEEIGNVQL 850
Cdd:PRK01156 177 MLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNelsSLEDMKNRYES 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 851 EKAQQLSITSQVQELQNLLKGKEEQMN--TMKAVLEEKEK--DLANTGKWLQDLQEENESLKAHVQEVaQHNLKEVSSAS 926
Cdd:PRK01156 257 EIKTAESDLSMELEKNNYYKELEERHMkiINDPVYKNRNYinDYFKYKNDIENKKQILSNIDAEINKY-HAIIKKLSVLQ 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 927 QFEELEIVLKEKENELKRVEAMLKERESDLSS--------KTKLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELL 998
Cdd:PRK01156 336 KDYNDYIKKKSRYDDLNNQILELEGYEMDYNSylksieslKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEIN 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 999 KVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKVNKTSKER---QQQVEAVELEAKEV 1075
Cdd:PRK01156 416 VKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKsrlEEKIREIEIEVKDI 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1076 LKKLFPKVSVPSNLSYSEwlhgFEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAEtegilqklqr 1155
Cdd:PRK01156 496 DEKIVDLKKRKEYLESEE----INKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLE---------- 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1156 SVEQEENKW-KVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIE-NLRREREHLEMELEKAEMERSTY---VTEVREL 1230
Cdd:PRK01156 562 DLDSKRTSWlNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEiGFPDDKSYIDKSIREIENEANNLnnkYNEIQEN 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1231 KDLLTELQKKLDDSYSEAVRQNE---ELNLLKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDITVI 1307
Cdd:PRK01156 642 KILIEKLRGKIDNYKKQIAEIDSiipDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDI 721
|
.
gi 384946988 1308 E 1308
Cdd:PRK01156 722 N 722
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
412-532 |
1.50e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 412 REQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNA-------EQAVT 484
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALglplpasAEEFA 383
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 384946988 485 QLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSL 532
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASL 431
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
737-915 |
1.84e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 737 IQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQvsfASLVEELKKVIHEKDGKIKSVEel 816
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRL---ELEIEEVEARIKKYEEQLGNVR-- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 817 leaellkvanKEKTVQDLKQEIKALKEEIGnvQLEKaQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTgkw 896
Cdd:COG1579 87 ----------NNKEYEALQKEIESLKRRIS--DLED-EILELMERIEELEEELAELEAELAELEAELEEKKAELDEE--- 150
|
170
....*....|....*....
gi 384946988 897 LQDLQEENESLKAHVQEVA 915
Cdd:COG1579 151 LAELEAELEELEAEREELA 169
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
898-1074 |
2.04e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 898 QDLQEENESLKAHVQEVAQHNLKEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQI 977
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 978 EQLKQQNYQQASSFPP------------------HEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEA 1039
Cdd:COG4942 107 AELLRALYRLGRQPPLalllspedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190
....*....|....*....|....*....|....*.
gi 384946988 1040 MEALASTEKMLQDKVNKTSKER-QQQVEAVELEAKE 1074
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELaELAAELAELQQEA 222
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1119-1260 |
2.05e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.54 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1119 EHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVE--QEENK-WKVKVDESHKTIKQMQSSFTSSEQELERLRRE 1195
Cdd:COG2433 384 ELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVErlEAEVEeLEAELEEKDERIERLERELSEARSEERREIRK 463
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 384946988 1196 NKDIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQ-------KKLDDSYSEAVRQNEELNLLKA 1260
Cdd:COG2433 464 DREISRLDREIERLERELEEERERIEELKRKLERLKELWKLEHsgelvpvKVVEKFTKEAIRRLEEEYGLKE 535
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1186-1357 |
2.53e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1186 EQELERLRrenkDIEN-LRREREHLEMELEKAEmerstyvtEVRELKDLLTELQ-----KKLDDSYSEAVRQNEELNLLK 1259
Cdd:COG1196 185 EENLERLE----DILGeLERQLEPLERQAEKAE--------RYRELKEELKELEaelllLKLRELEAELEELEAELEELE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1260 AQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDITVIENSDVSPETESSEKETMSVSLNQTVTQLQQLL 1339
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
170
....*....|....*...
gi 384946988 1340 QAVNQQLTKEKEHYQVLE 1357
Cdd:COG1196 333 EELEEELEELEEELEEAE 350
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
925-1228 |
3.17e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 925 ASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIE-QLKQQNYQQASSFPPHEELLKviSE 1003
Cdd:pfam17380 333 AAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMErQQKNERVRQELEAARKVKILE--EE 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1004 REKEISGLWNELDSLKDAVEHQRKknndlreknwEAMEALASTEKMLQDKVNKTSKERQQQVEAVELEAKEVLKKLFPKV 1083
Cdd:pfam17380 411 RQRKIQQQKVEMEQIRAEQEEARQ----------REVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELE 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1084 SVPSnlsysewlhgfEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEgilqklQRSVEQEENK 1163
Cdd:pfam17380 481 KEKR-----------DRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEE------RRREAEEERR 543
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 384946988 1164 WKVKVDESHKTIKQMQSSfTSSEQELERLRRENKDIenlrreREHLEMELEKAEMERSTYVTEVR 1228
Cdd:pfam17380 544 KQQEMEERRRIQEQMRKA-TEERSRLEAMEREREMM------RQIVESEKARAEYEATTPITTIK 601
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
468-801 |
3.24e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.81 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 468 KLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLhsKLTDTLVSKQQLE 547
Cdd:PLN02939 64 KLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDF--QLEDLVGMIQNAE 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 548 QRLMQLmesEQKRVNKEEslqmQVQDILEQNEALKAQIQQFHSQIAAQTSASVLA--EELHKVIAEK--DKQIKQTEDSL 623
Cdd:PLN02939 142 KNILLL---NQARLQALE----DLEKILTEKEALQGKINILEMRLSETDARIKLAaqEKIHVEILEEqlEKLRNELLIRG 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 624 ANERDHLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLqheISNKMEEFKIL 703
Cdd:PLN02939 215 ATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF---IVAQEDVSKLS 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 704 NDQNKALKLEVQKLQTLVSEQPNKdvVEQMEKCIQEKDEKLKTVEELLET--------------GLIQVATK--EEELNA 767
Cdd:PLN02939 292 PLQYDCWWEKVENLQDLLDRATNQ--VEKAALVLDQNQDLRDKVDKLEASlkeanvskfssykvELLQQKLKllEERLQA 369
|
330 340 350
....*....|....*....|....*....|....
gi 384946988 768 IRTENSSLTKEVQDLKAKQNDQVSfaSLVEELKK 801
Cdd:PLN02939 370 SDHEIHSYIQLYQESIKEFQDTLS--KLKEESKK 401
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
744-1297 |
3.34e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 744 LKTVEELLETGLIQVATKEEELNAIRTENSSLTK---------------EVQDLKAKQNDQVSFASLVEELKKVIHE--K 806
Cdd:PTZ00121 1026 IEKIEELTEYGNNDDVLKEKDIIDEDIDGNHEGKaeakahvgqdeglkpSYKDFDFDAKEDNRADEATEEAFGKAEEakK 1105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 807 DGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNvQLEKAQQLSITSQVQELQNL-LKGKEEQMNTMKAVLEE 885
Cdd:PTZ00121 1106 TETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEAR-KAEDAKRVEIARKAEDARKAeEARKAEDAKKAEAARKA 1184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 886 KEKDLANTGKWLQDLQEENESLKAHVQEVAQhnlkEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQD 965
Cdd:PTZ00121 1185 EEVRKAEELRKAEDARKAEAARKAEEERKAE----EARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEA 1260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 966 VQDENKLFKSQI---EQLKQQNYQQASSFPPHEELLKVISERE----KEISGLWNELDSLKDAVEHQRKKNNDLREKNWE 1038
Cdd:PTZ00121 1261 RMAHFARRQAAIkaeEARKADELKKAEEKKKADEAKKAEEKKKadeaKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEE 1340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1039 AM---EALASTEKMLQDKVNKTSK----------ERQQQVEAVELEAKEVLKKLFPKVSVPSNLSYSEWLHGFEKKAKEC 1105
Cdd:PTZ00121 1341 AKkaaEAAKAEAEAAADEAEAAEEkaeaaekkkeEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA 1420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1106 MAGTSGSEEVKVLEHKLKEADEMHTllQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSS 1185
Cdd:PTZ00121 1421 DEAKKKAEEKKKADEAKKKAEEAKK--ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1186 EQELERLRRENKDIENLRREREHLEM-ELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEE---------L 1255
Cdd:PTZ00121 1499 ADEAKKAAEAKKKADEAKKAEEAKKAdEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEakkaeedknM 1578
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 384946988 1256 NLLKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKI 1297
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1131-1345 |
3.55e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1131 LLQLECEKYKSVLAETEGILQKLQRSVEQEEnkwkvkvdeshKTIKQMQSSFTSSEQELERLRRE----NKDIENLRRER 1206
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELE-----------KELAALKKEEKALLKQLAALERRiaalARRIRALEQEL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1207 EHLEMELEKAEMERSTYVTEVRELKDLLTELQKKL--------------DDSYSEAVRQNEELNLLKAQLNETLTKLRTE 1272
Cdd:COG4942 79 AALEAELAELEKEIAELRAELEAQKEELAELLRALyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRAD 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 384946988 1273 QNERQKVAGDLHKAQQSLELIQSKIVKAAGDItviensdvspETESSEKETMSVSLNQTVTQLQQLLQAVNQQ 1345
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAAL----------EALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
570-948 |
3.92e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 3.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 570 QVQDILEQNEALKAQIQQFHSQI-AAQTSASVLAEELHKVIAEKDKQIKQTEDSLANERDHLTSKEEELKDIQNMNFLLK 648
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIeNRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 649 AEVQKLQALANEQAAAAHELEKMQQSVYVKDDkirlleeqlqheisnkMEEFKILNDQNKALKLEVQKLQTLVSEQPNKD 728
Cdd:TIGR02169 758 SELKELEARIEELEEDLHKLEEALNDLEARLS----------------HSRIPEIQAELSKLEEEVSRIEARLREIEQKL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 729 VVEQMEKCIQEKdeKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDqvsFASLVEELKKVIHEKDG 808
Cdd:TIGR02169 822 NRLTLEKEYLEK--EIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD---LESRLGDLKKERDELEA 896
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 809 KIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSITSQV---QELQNLLKGKEEQMNTMKAV--- 882
Cdd:TIGR02169 897 QLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEElslEDVQAELQRVEEEIRALEPVnml 976
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 883 ----LEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQ--------------HNLKEV------SSASQFEE-------- 930
Cdd:TIGR02169 977 aiqeYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKkkrevfmeafeainENFNEIfaelsgGTGELILEnpddpfag 1056
|
410
....*....|....*....
gi 384946988 931 -LEIVLKEKENELKRVEAM 948
Cdd:TIGR02169 1057 gLELSAKPKGKPVQRLEAM 1075
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
830-1078 |
4.33e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.44 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 830 TVQDLKQEIKALKEEignvQLEKAQQLSITSQVQELQNLLKGKEEQmntmKAVLEEKEKDLANTGKWLQDLQEENESLKA 909
Cdd:PRK11281 37 TEADVQAQLDALNKQ----KLLEAEDKLVQQDLEQTLALLDKIDRQ----KEETEQLKQQLAQAPAKLRQAQAELEALKD 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 910 HVQEVAQHNLKEVSSAsqfeELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQdeNKLFKSQiEQLKQQNYQQAS 989
Cdd:PRK11281 109 DNDEETRETLSTLSLR----QLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQ--AALYANS-QRLQQIRNLLKG 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 990 SFPPHEELlkviseREKEISGLWNELDSLKDAVEHQRK--KNND-----LREKNWEAMEALASTEKM---LQDKVN---- 1055
Cdd:PRK11281 182 GKVGGKAL------RPSQRVLLQAEQALLNAQNDLQRKslEGNTqlqdlLQKQRDYLTARIQRLEHQlqlLQEAINskrl 255
|
250 260
....*....|....*....|....*..
gi 384946988 1056 ----KTSKERQQQVEAVELEAKEVLKK 1078
Cdd:PRK11281 256 tlseKTVQEAQSQDEAARIQANPLVAQ 282
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
431-641 |
4.54e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.97 E-value: 4.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 431 DAVSNTTNQLESKQsAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRKRtae 510
Cdd:COG3883 16 PQIQAKQKELSELQ-AELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER--- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 511 heAAQQDLQSKFVAKENEVqsLHSKLTDTLVSKQQLeqrLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQfhs 590
Cdd:COG3883 92 --ARALYRSGGSVSYLDVL--LGSESFSDFLDRLSA---LSKIADADADLLEELKADKAELEAKKAELEAKLAELEA--- 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 384946988 591 qiaAQTSASVLAEELHKVIAEKDKQIKQTEDSLANERDHLTSKEEELKDIQ 641
Cdd:COG3883 162 ---LKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
829-1308 |
4.76e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 4.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 829 KTVQDLKQEIKALKEEIGNVQLEKAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLK 908
Cdd:PRK02224 206 ERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLR 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 909 AHVQEVAQHNlKEVSSASQFEELEIvlkekenelKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQqa 988
Cdd:PRK02224 286 ERLEELEEER-DDLLAEAGLDDADA---------EAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADD-- 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 989 ssfppHEELLKVISEREKEisgLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLqDKVNKTSKERQQQVEAV 1068
Cdd:PRK02224 354 -----LEERAEELREEAAE---LESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDL-GNAEDFLEELREERDEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1069 ELEAKEVLKKLfpkVSVPSNLSYSEWLHGfEKKAKECMAGTSGSEEVKVLEHKLKEADEmhtlLQLECEKYKSVLAETEG 1148
Cdd:PRK02224 425 REREAELEATL---RTARERVEEAEALLE-AGKCPECGQPVEGSPHVETIEEDRERVEE----LEAELEDLEEEVEEVEE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1149 ILQKLQRSVEQEE--NKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIENLRRERE------HLEMELEKAEM-- 1218
Cdd:PRK02224 497 RLERAEDLVEAEDriERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKReaaaeaEEEAEEAREEVae 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1219 --ERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTEQNERQKVAGD-----LHKAQQSLE 1291
Cdd:PRK02224 577 lnSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEfdearIEEAREDKE 656
|
490
....*....|....*..
gi 384946988 1292 LIQSKIVKAAGDITVIE 1308
Cdd:PRK02224 657 RAEEYLEQVEEKLDELR 673
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
409-790 |
5.14e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 5.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 409 QQVREQMEAEIAHLKQENGILRDAVSNTTNQLEskqsaeLNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQLKV 488
Cdd:COG4717 94 QEELEELEEELEELEAELEELREELEKLEKLLQ------LLPLYQELEALEAELAELPERLEELEERLEELRELEEELEE 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 489 QLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLmESEQKRVNKEESLQ 568
Cdd:COG4717 168 LEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL-ENELEAAALEERLK 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 569 MQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQIKQTEDSLAN-ERDHLTSKEEELKDIQNMNFLL 647
Cdd:COG4717 247 EARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEaEELQALPALEELEEEELEELLA 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 648 KAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISN------------------KMEEFKILNDQNKA 709
Cdd:COG4717 327 ALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAAllaeagvedeeelraaleQAEEYQELKEELEE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 710 LKLEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTEN--SSLTKEVQDLKAKQN 787
Cdd:COG4717 407 LEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGelAELLQELEELKAELR 486
|
...
gi 384946988 788 DQV 790
Cdd:COG4717 487 ELA 489
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
1183-1272 |
5.45e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 5.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1183 TSSEQELERLRREnkdIENLRREREHLEMELEKAEMER-STYVTEVRELKDLLTELQKK-----------------LDDS 1244
Cdd:COG0542 407 DSKPEELDELERR---LEQLEIEKEALKKEQDEASFERlAELRDELAELEEELEALKARweaekelieeiqelkeeLEQR 483
|
90 100
....*....|....*....|....*...
gi 384946988 1245 YSEAVRQNEELNLLKAQLNETLTKLRTE 1272
Cdd:COG0542 484 YGKIPELEKELAELEEELAELAPLLREE 511
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
934-1291 |
5.74e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 5.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 934 VLKEKENELKRVEAMLKERESD-----LSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEI 1008
Cdd:PRK02224 181 VLSDQRGSLDQLKAQIEEKEEKdlherLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1009 SGL-------WNELDSLKDAVEHQRKKNNDLREknwEAMEALASTEkmLQDKVNKTSKERQQQVEAVELEAKEVLKKLFP 1081
Cdd:PRK02224 261 EDLretiaetEREREELAEEVRDLRERLEELEE---ERDDLLAEAG--LDDADAEAVEARREELEDRDEELRDRLEECRV 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1082 KVSVPSNL--SYSEWLHGFEKKAKECmagtsgSEEVKVLEHKLKEADEmhtllqlECEKYKSVLAETEGILQKLQ----- 1154
Cdd:PRK02224 336 AAQAHNEEaeSLREDADDLEERAEEL------REEAAELESELEEARE-------AVEDRREEIEELEEEIEELRerfgd 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1155 ----------RSVEQEENKwkvkvDESHKTIKQMQSSFTSSE---QELERLRRENK---------------DIENLRRER 1206
Cdd:PRK02224 403 apvdlgnaedFLEELREER-----DELREREAELEATLRTARervEEAEALLEAGKcpecgqpvegsphveTIEEDRERV 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1207 EHLEMELEKAEMERSTYVTEVRELKDLltelqkklddsySEAVRQNEELNLLKAQLNETLTKLRTEQNERQKVAGDLHKA 1286
Cdd:PRK02224 478 EELEAELEDLEEEVEEVEERLERAEDL------------VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRER 545
|
....*
gi 384946988 1287 QQSLE 1291
Cdd:PRK02224 546 AAELE 550
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
556-1344 |
5.88e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 5.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 556 SEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQIKQTEDSLANERDHLTSKEE 635
Cdd:TIGR00606 166 SEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYEN 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 636 ELKDIQNmnfllkaevqklqalaneqaaAAHELEKMQQSVYVKDDKIRLLEEQlqheisnkmeefkilndqnkalKLEVQ 715
Cdd:TIGR00606 246 ELDPLKN---------------------RLKEIEHNLSKIMKLDNEIKALKSR----------------------KKQME 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 716 KLqtlvseqpNKDVVEQMEKCIQEKDEKLKTVEELLETgliQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASL 795
Cdd:TIGR00606 283 KD--------NSELELKMEKVFQGTDEQLNDLYHNHQR---TVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGR 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 796 VEELKKVIHEK-----------------DGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSI 858
Cdd:TIGR00606 352 LQLQADRHQEHirardsliqslatrlelDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEI 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 859 TSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQhnLKEVSSASQFEELEIVLKEK 938
Cdd:TIGR00606 432 RDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSK--AEKNSLTETLKKEVKSLQNE 509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 939 ENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQ-------QASSFPPHEELLKVISEREKEISGL 1011
Cdd:TIGR00606 510 KADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRhsdeltsLLGYFPNKKQLEDWLHSKSKEINQT 589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1012 WNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKVnkTSKERQQQVEAVELEAKEVLKKLFPkVSVPSNLsY 1091
Cdd:TIGR00606 590 RDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVC--GSQDEESDLERLKEEIEKSSKQRAM-LAGATAV-Y 665
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1092 SEWLHGFEKKAKECMAGTSGSEEVKvlehklKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDES 1171
Cdd:TIGR00606 666 SQFITQLTDENQSCCPVCQRVFQTE------AELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSII 739
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1172 HKTIKQMQSSFTSSEQELERLRRENKDIENLRREREHLEMELEKAEmERSTYVTEVRELKDLLTELQKKLDDSYSEAvrQ 1251
Cdd:TIGR00606 740 DLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAK-VCLTDVTIMERFQMELKDVERKIAQQAAKL--Q 816
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1252 NEELNLLKAQLNEtltKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDITVIENSDVSPETESSEKETMSVSLNQT 1331
Cdd:TIGR00606 817 GSDLDRTVQQVNQ---EKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVEL 893
|
810
....*....|...
gi 384946988 1332 VTQLQQLLQAVNQ 1344
Cdd:TIGR00606 894 STEVQSLIREIKD 906
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
974-1291 |
6.11e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.88 E-value: 6.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 974 KSQIEQLKQQNYQQASSFppheellkviserEKEISGLWNELDSLKDAVEHQRKKNNDL-------REKNWEAMEALAST 1046
Cdd:pfam05557 8 KARLSQLQNEKKQMELEH-------------KRARIELEKKASALKRQLDRESDRNQELqkrirllEKREAEAEEALREQ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1047 EKMLQ--DKVNKTSKERQQQVEAVELEAKEVLKKLFPKVSvpsnlsysEWLHGFEKKAKECMAGTSGSEEVKVLEHKLKE 1124
Cdd:pfam05557 75 AELNRlkKKYLEALNKKLNEKESQLADAREVISCLKNELS--------ELRRQIQRAELELQSTNSELEELQERLDLLKA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1125 ADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENkWKVKVdeshKTIKQMQSSFTSSEQELERLRRENK------- 1197
Cdd:pfam05557 147 KASEAEQLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQ-DSEIV----KNSKSELARIPELEKELERLREHNKhlnenie 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1198 DIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQ--KKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTEQNE 1275
Cdd:pfam05557 222 NKLLLKEEVEDLKRKLEREEKYREEAATLELEKEKLEQELQswVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSS 301
|
330
....*....|....*.
gi 384946988 1276 RQKVAGDLHKAQQSLE 1291
Cdd:pfam05557 302 LTSSARQLEKARRELE 317
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
479-594 |
6.67e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 40.42 E-value: 6.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 479 AEQAVTQLKVQLQEAERRWEEVQSYI--RKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMES 556
Cdd:COG1566 81 LQAALAQAEAQLAAAEAQLARLEAELgaEAEIAAAEAQLAAAQAQLDLAQRELERYQALYKKGAVSQQELDEARAALDAA 160
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 384946988 557 EQKRVNKEESLQMQVQDILEQNE--ALKAQIQQFHSQIAA 594
Cdd:COG1566 161 QAQLEAAQAQLAQAQAGLREEEElaAAQAQVAQAEAALAQ 200
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1062-1296 |
6.74e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 6.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1062 QQQVEAVElEAKEVLKKlfPKVSvPSNLSysEWLHGFEKKAKEcmagtsGSEEVKVLEHKLKEADEMHTllqleceKYKS 1141
Cdd:COG3096 416 QQAVQALE-KARALCGL--PDLT-PENAE--DYLAAFRAKEQQ------ATEEVLELEQKLSVADAARR-------QFEK 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1142 VLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIENLRRE-----------REHLE 1210
Cdd:COG3096 477 AYELVCKIAGEVERSQAWQTARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEfcqrigqqldaAEELE 556
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1211 MELEKAEMERSTYVTEVRELKDLLTELQKKLDD---SYSEAVRQ-------NEELNLLKAQLNETLTKLRTEQNERQKVA 1280
Cdd:COG3096 557 ELLAELEAQLEELEEQAAEAVEQRSELRQQLEQlraRIKELAARapawlaaQDALERLREQSGEALADSQEVTAAMQQLL 636
|
250
....*....|....*.
gi 384946988 1281 GDLHKAQQSLELIQSK 1296
Cdd:COG3096 637 EREREATVERDELAAR 652
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
625-1292 |
7.61e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.98 E-value: 7.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 625 NERDHLTSKEEELKDIQNMNFLLKAE-----VQKLQALANEQAAAAHELEKMQQSVYVKDD----KIRLLEEQLQHEISN 695
Cdd:pfam12128 150 NDRTLLGRERVELRSLARQFALCDSEsplrhIDKIAKAMHSKEGKFRDVKSMIVAILEDDGvvppKSRLNRQQVEHWIRD 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 696 KMEEFKILNDQNKALKLEVQ---------KLQTLVSEQpnKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELN 766
Cdd:pfam12128 230 IQAIAGIMKIRPEFTKLQQEfntlesaelRLSHLHFGY--KSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELN 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 767 A-IRTENSSLTK------------------EVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEaellkvANK 827
Cdd:pfam12128 308 GeLSAADAAVAKdrselealedqhgafldaDIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYN------RRR 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 828 EKTVQDLKQEIKALKEEIGNVQLEKAQQLSITSQV-QELQNLLKgkeEQMNTMKAVLEEKEKDLANTGKWLQDL------ 900
Cdd:pfam12128 382 SKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDlQALESELR---EQLEAGKLEFNEEEYRLKSRLGELKLRlnqata 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 901 -------QEENESLKAHVQEVAQHNLKEVSSAsQFEEL----------------EIVLKEKENELKRVEAML-------- 949
Cdd:pfam12128 459 tpelllqLENFDERIERAREEQEAANAEVERL-QSELRqarkrrdqasealrqaSRRLEERQSALDELELQLfpqagtll 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 950 ----------KERESDLSSKTKLLQ----------DVQDENKLF--KSQIEQLkqqnyqQASSFPPHEELLK-------- 999
Cdd:pfam12128 538 hflrkeapdwEQSIGKVISPELLHRtdldpevwdgSVGGELNLYgvKLDLKRI------DVPEWAASEEELRerldkaee 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1000 -------VISEREKEISGLWNELDSLKDAVEHQRK--KNNDLREKNWeamealASTEKMLQDKVNKTSKERQQQVE---- 1066
Cdd:pfam12128 612 alqsareKQAAAEEQLVQANGELEKASREETFARTalKNARLDLRRL------FDEKQSEKDKKNKALAERKDSANerln 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1067 AVELEAKEVLKKLfpkvsvpsnlsySEWLHGFEKKAKEcmAGTSGSEEVKVLEHKLKeaDEMHTLLQLECEKYKSVLAET 1146
Cdd:pfam12128 686 SLEAQLKQLDKKH------------QAWLEEQKEQKRE--ARTEKQAYWQVVEGALD--AQLALLKAAIAARRSGAKAEL 749
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1147 EGILQKLQRSVEqeenkwKVKVDEshKTIKQMQSSFTSSEQELERLRRENKDIENLRR-EREHLEMELEKAEMERSTYVT 1225
Cdd:pfam12128 750 KALETWYKRDLA------SLGVDP--DVIAKLKREIRTLERKIERIAVRRQEVLRYFDwYQETWLQRRPRLATQLSNIER 821
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 384946988 1226 EVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLEL 1292
Cdd:pfam12128 822 AISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGSI 888
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
269-526 |
7.99e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.87 E-value: 7.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 269 KKLKTETDKENA-----EVKFKDFLLSLKTMMFSEDEAL-CVVDLLKEKSGVIQDAlkKSSKGELTTLVHQLQEKDKLLA 342
Cdd:pfam15921 607 QEFKILKDKKDAkirelEARVSDLELEKVKLVNAGSERLrAVKDIKQERDQLLNEV--KTSRNELNSLSEDYEVLKRNFR 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 343 AVKEDAAATKDRCKQLTQEMMSEKERSNVVIARMKDRIGTLEKEHNVFQNKIHVSYQETQQMQMKFQQVREQMeaeiAHL 422
Cdd:pfam15921 685 NKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAM----TNA 760
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 423 KQENGILRDavsnttnqleskqsaELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQS 502
Cdd:pfam15921 761 NKEKHFLKE---------------EKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQD 825
|
250 260
....*....|....*....|....
gi 384946988 503 YIRKRtaEHEAAQQDLQSKFVAKE 526
Cdd:pfam15921 826 IIQRQ--EQESVRLKLQHTLDVKE 847
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
554-859 |
8.40e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.61 E-value: 8.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 554 MESEQKR-VNKEESLQMQVQDILEQNEALKAQIQQfHSQIAAQTSASVLAEELHKVIAEKDKQIKQTEDSLANERDHLTS 632
Cdd:PLN03229 413 VDPERKVnMKKREAVKTPVRELEGEVEKLKEQILK-AKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENL 491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 633 KEEELK---DIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIR---LLE-----EQLQHEISNKMEEFK 701
Cdd:PLN03229 492 REEFSKansQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRakaLSEkkskaEKLKAEINKKFKEVM 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 702 I---LNDQNKALKLEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELnAIRTENSSLTKE 778
Cdd:PLN03229 572 DrpeIKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDT-AEQTPPPNLQEK 650
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 779 VQDLKAKQNDQVSFASLVEELKKVIHEkdgkiKSVEELLEAELLKVANKEKtVQDLKQEIK----------ALKEEIGNV 848
Cdd:PLN03229 651 IESLNEEINKKIERVIRSSDLKSKIEL-----LKLEVAKASKTPDVTEKEK-IEALEQQIKqkiaealnssELKEKFEEL 724
|
330
....*....|.
gi 384946988 849 QLEKAQQLSIT 859
Cdd:PLN03229 725 EAELAAARETA 735
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
853-1243 |
8.42e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 40.66 E-value: 8.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 853 AQQLSITSQVQELQNLlkgkEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKEVSSASQFEELE 932
Cdd:PRK01156 149 AQRKKILDEILEINSL----ERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLS 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 933 IVLKEKENELKRVEAMLKERESDLSSKTKLLQDVqdenKLFKSQIEQLKQQNYQQASSFPPHEELL--KVISEREkEISG 1010
Cdd:PRK01156 225 IEYNNAMDDYNNLKSALNELSSLEDMKNRYESEI----KTAESDLSMELEKNNYYKELEERHMKIIndPVYKNRN-YIND 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1011 LWNELDSLKDAVEHQRKKNNDLrEKNWEAMEALASTEKMLQDKVNKTSKERQQQVEAVELEAKEVLKKLFpkvsVPSNLS 1090
Cdd:PRK01156 300 YFKYKNDIENKKQILSNIDAEI-NKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSY----LKSIES 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1091 YSEWLHGFEKKAKECMAGTSGSEEVKVL--EHKLKEADEMHTLLQLECEKYKSVLAETEGILQK---LQRSVEQEENKWK 1165
Cdd:PRK01156 375 LKKKIEEYSKNIERMSAFISEILKIQEIdpDAIKKELNEINVKLQDISSKVSSLNQRIRALRENldeLSRNMEMLNGQSV 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384946988 1166 VKV-------DESHKTIKQMQSSFTSSEQELERLRRENKDIENLRREREHLEMELEKAEMERstYVTEVRELKDLLTELQ 1238
Cdd:PRK01156 455 CPVcgttlgeEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINK--SINEYNKIESARADLE 532
|
....*
gi 384946988 1239 KKLDD 1243
Cdd:PRK01156 533 DIKIK 537
|
|
|