NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|384945384|gb|AFI36297|]
View 

DDB1- and CUL4-associated factor 4-like protein 2 [Macaca mulatta]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 1000017)

WD40 repeat domain-containing protein folds into a beta-propeller structure and functions as a scaffold, providing a platform for the interaction and assembly of several proteins into a signalosome; similar to a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
Gene Ontology:  GO:0005515
PubMed:  10322433|8090199|30069656|29026209
SCOP:  4002744

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
WD40 super family cl29593
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 269-369 9.88e-13

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


The actual alignment was detected with superfamily member cd00200:

Pssm-ID: 475233 [Multi-domain]  Cd Length: 289  Bit Score: 68.13  E-value: 9.88e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384945384 269 HDSAVTSLQILQEGQCLVASDMTGTIKLWDLRATKCVTQYEGHvnNSAYLPLHVNEEEGVVAAVGQDCYTRIWSLRHGHL 348
Cdd:cd00200   92 HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH--TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169

                         90       100
                 ....*....|....*....|.
gi 384945384 349 LTTIpspyPASEDDIPSVAFS 369
Cdd:cd00200  170 VATL----TGHTGEVNSVAFS 186
 
Name Accession Description Interval E-value
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 269-369 9.88e-13

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 68.13  E-value: 9.88e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384945384 269 HDSAVTSLQILQEGQCLVASDMTGTIKLWDLRATKCVTQYEGHvnNSAYLPLHVNEEEGVVAAVGQDCYTRIWSLRHGHL 348
Cdd:cd00200   92 HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH--TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169

                         90       100
                 ....*....|....*....|.
gi 384945384 349 LTTIpspyPASEDDIPSVAFS 369
Cdd:cd00200  170 VATL----TGHTGEVNSVAFS 186
WD40 COG2319
WD40 repeat [General function prediction only];
269-369 5.16e-11

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 63.78  E-value: 5.16e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384945384 269 HDSAVTSLQILQEGQCLVASDMTGTIKLWDLRATKCVTQYEGH---VNNSAYLPlhvneeEG-VVAAVGQDCYTRIWSLR 344
Cdd:COG2319  161 HSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHtgaVRSVAFSP------DGkLLASGSADGTVRLWDLA 234

                         90       100
                 ....*....|....*....|....*
gi 384945384 345 HGHLLTTIPSPypasEDDIPSVAFS 369
Cdd:COG2319  235 TGKLLRTLTGH----SGSVRSVAFS 255
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 269-298 1.79e-03

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 35.75  E-value: 1.79e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 384945384   269 HDSAVTSLQILQEGQCLVASDMTGTIKLWD 298
Cdd:smart00320  11 HTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
269-298 2.91e-03

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 35.01  E-value: 2.91e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 384945384  269 HDSAVTSLQILQEGQCLVASDMTGTIKLWD 298
Cdd:pfam00400  10 HTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
 
Name Accession Description Interval E-value
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 269-369 9.88e-13

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 68.13  E-value: 9.88e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384945384 269 HDSAVTSLQILQEGQCLVASDMTGTIKLWDLRATKCVTQYEGHvnNSAYLPLHVNEEEGVVAAVGQDCYTRIWSLRHGHL 348
Cdd:cd00200   92 HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH--TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC 169

                         90       100
                 ....*....|....*....|.
gi 384945384 349 LTTIpspyPASEDDIPSVAFS 369
Cdd:cd00200  170 VATL----TGHTGEVNSVAFS 186
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 269-369 1.37e-11

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 64.66  E-value: 1.37e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384945384 269 HDSAVTSLQILQEGQCLVASDMTGTIKLWDLRATKCVTQYEGHVNNSAYlpLHVNEEEGVVAAVGQDCYTRIWSLRHGHL 348
Cdd:cd00200  176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS--VAFSPDGYLLASGSEDGTIRVWDLRTGEC 253

                         90       100
                 ....*....|....*....|.
gi 384945384 349 LTTIpspyPASEDDIPSVAFS 369
Cdd:cd00200  254 VQTL----SGHTNSVTSLAWS 270
WD40 COG2319
WD40 repeat [General function prediction only];
269-369 5.16e-11

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 63.78  E-value: 5.16e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384945384 269 HDSAVTSLQILQEGQCLVASDMTGTIKLWDLRATKCVTQYEGH---VNNSAYLPlhvneeEG-VVAAVGQDCYTRIWSLR 344
Cdd:COG2319  161 HSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHtgaVRSVAFSP------DGkLLASGSADGTVRLWDLA 234

                         90       100
                 ....*....|....*....|....*
gi 384945384 345 HGHLLTTIPSPypasEDDIPSVAFS 369
Cdd:COG2319  235 TGKLLRTLTGH----SGSVRSVAFS 255
WD40 COG2319
WD40 repeat [General function prediction only];
269-369 8.08e-11

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 63.01  E-value: 8.08e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384945384 269 HDSAVTSLQILQEGQCLVASDMTGTIKLWDLRATKCVTQYEGH---VNNSAYLPlhvneeEG-VVAAVGQDCYTRIWSLR 344
Cdd:COG2319  203 HTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHsgsVRSVAFSP------DGrLLASGSADGTVRLWDLA 276

                         90       100
                 ....*....|....*....|....*
gi 384945384 345 HGHLLTTIPSPypasEDDIPSVAFS 369
Cdd:COG2319  277 TGELLRTLTGH----SGGVNSVAFS 297
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 263-370 4.04e-10

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 60.04  E-value: 4.04e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384945384 263 KAICLSHDSAVTSLQILQEGQCLVASDMTGTIKLWDLRATKCVTQYEGH---VNNSAYLPlhvneEEGVVAAVGQDCYTR 339
Cdd:cd00200  128 LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHtgeVNSVAFSP-----DGEKLLSSSSDGTIK 202

                         90       100       110
                 ....*....|....*....|....*....|.
gi 384945384 340 IWSLRHGHLLTTipspYPASEDDIPSVAFSS 370
Cdd:cd00200  203 LWDLSTGKCLGT----LRGHENGVNSVAFSP 229
WD40 COG2319
WD40 repeat [General function prediction only];
269-369 1.76e-09

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 59.15  E-value: 1.76e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384945384 269 HDSAVTSLQILQEGQCLVASDMTGTIKLWDLRATKCVTQYEGH---VNNSAYLPlhvneeEG-VVAAVGQDCYTRIWSLR 344
Cdd:COG2319  119 HTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHsgaVTSVAFSP------DGkLLASGSDDGTVRLWDLA 192

                         90       100
                 ....*....|....*....|....*
gi 384945384 345 HGHLLTTIpspyPASEDDIPSVAFS 369
Cdd:COG2319  193 TGKLLRTL----TGHTGAVRSVAFS 213
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 210-369 2.60e-09

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 57.73  E-value: 2.60e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384945384 210 LTNVVTGHqqsfgtSSDVLAQQFAIMTPLLFNGCRSGEVFGIDLRCGNQGRGWKAiclsHDSAVTSLQILQEGQCLVASD 289
Cdd:cd00200    1 LRRTLKGH------TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG----HTGPVRDVAASADGTYLASGS 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384945384 290 MTGTIKLWDLRATKCVTQYEGH---VNNSAYLPLHvneeeGVVAAVGQDCYTRIWSLRHGHLLTTIPSPypasEDDIPSV 366
Cdd:cd00200   71 SDKTIRLWDLETGECVRTLTGHtsyVSSVAFSPDG-----RILSSSSRDKTIKVWDVETGKCLTTLRGH----TDWVNSV 141


                 ...
gi 384945384 367 AFS 369
Cdd:cd00200  142 AFS 144
WD40 COG2319
WD40 repeat [General function prediction only];
269-369 6.46e-09

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 57.23  E-value: 6.46e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384945384 269 HDSAVTSLQILQEGQCLVASDMTGTIKLWDLRATKCVTQYEGHVN--NS-AYLPlhvneEEGVVAAVGQDCYTRIWSLRH 345
Cdd:COG2319  287 HSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGavRSvAFSP-----DGKTLASGSDDGTVRLWDLAT 361

                         90       100
                 ....*....|....*....|....
gi 384945384 346 GHLLTTIpspyPASEDDIPSVAFS 369
Cdd:COG2319  362 GELLRTL----TGHTGAVTSVAFS 381
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 215-342 9.00e-09

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 56.19  E-value: 9.00e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384945384 215 TGHQqsfgtsSDVLAQQFAIMTPLLFNGCRSGEVFGIDLRCGNqgrgWKAICLSHDSAVTSLQILQEGQCLVASDMTGTI 294
Cdd:cd00200  174 TGHT------GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK----CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTI 243

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 384945384 295 KLWDLRATKCVTQYEGHvNNSAYLpLHVNEEEGVVAAVGQDCYTRIWS 342
Cdd:cd00200  244 RVWDLRTGECVQTLSGH-TNSVTS-LAWSPDGKRLASGSADGTIRIWD 289
WD40 COG2319
WD40 repeat [General function prediction only];
258-369 2.29e-08

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 55.69  E-value: 2.29e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384945384 258 QGRGWKAICLSHDSAVTSLQILQEGQCLVASDMTGTIKLWDLRATKCVTQYEGH---VNNSAYLPlhvneeEG-VVAAVG 333
Cdd:COG2319   66 AAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHtgaVRSVAFSP------DGkTLASGS 139

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 384945384 334 QDCYTRIWSLRHGHLLTTIPSPypasEDDIPSVAFS 369
Cdd:COG2319  140 ADGTVRLWDLATGKLLRTLTGH----SGAVTSVAFS 171
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 269-298 1.79e-03

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 35.75  E-value: 1.79e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 384945384   269 HDSAVTSLQILQEGQCLVASDMTGTIKLWD 298
Cdd:smart00320  11 HTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
WD40 COG2319
WD40 repeat [General function prediction only];
267-369 1.94e-03

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 40.28  E-value: 1.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 384945384 267 LSHDSAVTSLQILQEGQCLVASDMTGTIKLWDLRATKCVTQYEGH---VNNSAYLPLhvneeEGVVAAVGQDCYTRIWSL 343
Cdd:COG2319   33 LGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHtaaVLSVAFSPD-----GRLLASASADGTVRLWDL 107

                         90       100
                 ....*....|....*....|....*.
gi 384945384 344 RHGHLLTTIpspyPASEDDIPSVAFS 369
Cdd:COG2319  108 ATGLLLRTL----TGHTGAVRSVAFS 129
WD40 pfam00400
WD domain, G-beta repeat;
269-298 2.91e-03

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 35.01  E-value: 2.91e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 384945384  269 HDSAVTSLQILQEGQCLVASDMTGTIKLWD 298
Cdd:pfam00400  10 HTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH