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Conserved domains on  [gi|383417461|gb|AFH31944|]
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interferon-induced guanylate-binding protein 1 [Macaca mulatta]

Protein Classification

guanylate-binding family protein( domain architecture ID 12033579)

guanylate-binding family protein such as guanylate-binding protein 1 (GBP1), which is induced by interferon and hydrolyzes GTP to GMP in 2 consecutive cleavage reactions, is a large GTPase of the dynamin superfamily involved in the regulation of membrane, cytoskeleton, and cell cycle progression dynamics

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
GBP pfam02263
Guanylate-binding protein, N-terminal domain; Transcription of the anti-viral ...
18-280 2.20e-167

Guanylate-binding protein, N-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.


:

Pssm-ID: 460516  Cd Length: 260  Bit Score: 476.48  E-value: 2.20e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   18 NGRLMANPEALKILSAITQPVVVVAIVGLYRTGKSYLMNKLAGKKNGFSLGSTVRSHTKGIWMWCVPHPKKPEHTLVLLD 97
Cdd:pfam02263   1 DHQLELNEEALEILSAITQPVVVVAIAGLYRTGKSFLMNFLAGKLTGFSLGGTVESETKGIWMWCVPHPNKPKHTLVLLD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   98 TEGLGDIEKGDNENDSWIFALAVLLSSTFVYNSMGTINQQAMDQLHYVTELTHRirskSSPDENENEDSADFVSFFPDFV 177
Cdd:pfam02263  81 TEGLGDVEKSDNKNDAWIFALATLLSSTFVYNSSQTINQQALQQLHLVTELTEL----SSPRYGRVADSADFVSFFPDFV 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  178 WTLRDFSLDLEADGQPITADEYLTYSLKLKQGTSEKDKNFNLPRLCIRKFFPKKKCFVFDRPVHRKKL-AQLEKLHDEEL 256
Cdd:pfam02263 157 WTVRDFSLPLEADGGPITGDEYLENRLKLSQGQHEELQNFNLPRLCIRSFFPKRKCFLFDRPGLKKALnPQFEGLREDEL 236
                         250       260
                  ....*....|....*....|....
gi 383417461  257 DPEFVQQVADFCSYIFSNSKTKTL 280
Cdd:pfam02263 237 DPEFQQQLREFCSYILSHSLVKTL 260
GBP_C pfam02841
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral ...
282-578 1.68e-166

Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.


:

Pssm-ID: 460721 [Multi-domain]  Cd Length: 297  Bit Score: 475.62  E-value: 1.68e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  282 GGIKVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAVAHYEQQMGQKVQLPTETLQELLDLHRDSERE 361
Cdd:pfam02841   1 GGITVTGPRLGSLVQTYVDAINSGAVPCLENAVLALAQIENSAAVQKAIAHYEQQMAQKVKLPTETLQELLDLHRDCEKE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  362 AIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSGRCSALLQDIFSPLEEEVKMGIYSKPGGYRLFIQKLQDL 441
Cdd:pfam02841  81 AIAVFMKRSFKDENQEFQKELVELLEAKKDDFLKQNEEASSKYCSALLQDLSEPLEEKISQGTFSKPGGYKLFLEERDKL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  442 KKKYHEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASTKMLQEIQRKNEQMMEQKERS 521
Cdd:pfam02841 161 EAKYNQVPRKGVKAEEVLQEFLQSKEAVEEAILQTDQALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERS 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 383417461  522 YQEHLKQLTEKMERDRAQLLKEQERTLALKLQEQERLLKEGFQTESRKMQNEIQDLQ 578
Cdd:pfam02841 241 YQEHVKQLIEKMEAEREQLLAEQERMLEHKLQEQEELLKEGFKTEAESLQKEIQDLK 297
 
Name Accession Description Interval E-value
GBP pfam02263
Guanylate-binding protein, N-terminal domain; Transcription of the anti-viral ...
18-280 2.20e-167

Guanylate-binding protein, N-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.


Pssm-ID: 460516  Cd Length: 260  Bit Score: 476.48  E-value: 2.20e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   18 NGRLMANPEALKILSAITQPVVVVAIVGLYRTGKSYLMNKLAGKKNGFSLGSTVRSHTKGIWMWCVPHPKKPEHTLVLLD 97
Cdd:pfam02263   1 DHQLELNEEALEILSAITQPVVVVAIAGLYRTGKSFLMNFLAGKLTGFSLGGTVESETKGIWMWCVPHPNKPKHTLVLLD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   98 TEGLGDIEKGDNENDSWIFALAVLLSSTFVYNSMGTINQQAMDQLHYVTELTHRirskSSPDENENEDSADFVSFFPDFV 177
Cdd:pfam02263  81 TEGLGDVEKSDNKNDAWIFALATLLSSTFVYNSSQTINQQALQQLHLVTELTEL----SSPRYGRVADSADFVSFFPDFV 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  178 WTLRDFSLDLEADGQPITADEYLTYSLKLKQGTSEKDKNFNLPRLCIRKFFPKKKCFVFDRPVHRKKL-AQLEKLHDEEL 256
Cdd:pfam02263 157 WTVRDFSLPLEADGGPITGDEYLENRLKLSQGQHEELQNFNLPRLCIRSFFPKRKCFLFDRPGLKKALnPQFEGLREDEL 236
                         250       260
                  ....*....|....*....|....
gi 383417461  257 DPEFVQQVADFCSYIFSNSKTKTL 280
Cdd:pfam02263 237 DPEFQQQLREFCSYILSHSLVKTL 260
GBP_C pfam02841
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral ...
282-578 1.68e-166

Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.


Pssm-ID: 460721 [Multi-domain]  Cd Length: 297  Bit Score: 475.62  E-value: 1.68e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  282 GGIKVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAVAHYEQQMGQKVQLPTETLQELLDLHRDSERE 361
Cdd:pfam02841   1 GGITVTGPRLGSLVQTYVDAINSGAVPCLENAVLALAQIENSAAVQKAIAHYEQQMAQKVKLPTETLQELLDLHRDCEKE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  362 AIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSGRCSALLQDIFSPLEEEVKMGIYSKPGGYRLFIQKLQDL 441
Cdd:pfam02841  81 AIAVFMKRSFKDENQEFQKELVELLEAKKDDFLKQNEEASSKYCSALLQDLSEPLEEKISQGTFSKPGGYKLFLEERDKL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  442 KKKYHEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASTKMLQEIQRKNEQMMEQKERS 521
Cdd:pfam02841 161 EAKYNQVPRKGVKAEEVLQEFLQSKEAVEEAILQTDQALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERS 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 383417461  522 YQEHLKQLTEKMERDRAQLLKEQERTLALKLQEQERLLKEGFQTESRKMQNEIQDLQ 578
Cdd:pfam02841 241 YQEHVKQLIEKMEAEREQLLAEQERMLEHKLQEQEELLKEGFKTEAESLQKEIQDLK 297
GBP_C cd16269
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ...
288-578 3.55e-152

Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.


Pssm-ID: 293879 [Multi-domain]  Cd Length: 291  Bit Score: 438.93  E-value: 3.55e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 288 GPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAVAHYEQQMGQKVQLPTETLQELLDLHRDSEREAIEVFI 367
Cdd:cd16269    1 GRRLGTLVETYVDAINSGAVPCLENAVLALAQIENSAAVQKALAHYEEQMEQRVQLPTETLQELLDLHAACEKEALEVFM 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 368 RSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSGRCSALLQDIFSPLEEEVKMGIYSKPGGYRLFIQKLQDLKKKYHE 447
Cdd:cd16269   81 KRSFKDEDQKFQKKLMEQLEEKKEEFCKQNEEASSKRCQALLQELSAPLEEKISQGSYSVPGGYQLYLEDREKLVEKYRQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 448 EPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASTKMLQEIQRKNEQMMEQKERSYQEHLK 527
Cdd:cd16269  161 VPRKGVKAEEVLQEFLQSKEAEAEAILQADQALTEKEKEIEAERAKAEAAEQERKLLEEQQRELEQKLEDQERSYEEHLR 240
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 383417461 528 QLTEKMERDRAQLLKEQERTLALKLQEQERLLKEGFQTESRKMQNEIQDLQ 578
Cdd:cd16269  241 QLKEKMEEERENLLKEQERALESKLKEQEALLEEGFKEQAELLQEEIRSLK 291
GBP cd01851
Guanylate-binding protein (GBP) family (N-terminal domain); Guanylate-binding protein (GBP), ...
32-274 7.77e-79

Guanylate-binding protein (GBP) family (N-terminal domain); Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein (GAP) cannot approach.


Pssm-ID: 206650  Cd Length: 224  Bit Score: 248.39  E-value: 7.77e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  32 SAITQPVVVVAIVGLYRTGKSYLMNKLAGKKNGFSLGSTVRSHTKGIWMWCVPHP--KKPEHTLVLLDTEGLGDIEKGDN 109
Cdd:cd01851    1 LDVGFPVVVVSVFGSQSSGKSFLLNHLFGTSDGFDVMDTSQQTTKGIWMWSDPFKdtDGKKHAVLLLDTEGTDGRERGEF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 110 ENDSWIFALAVLLSSTFVYNSMGTINQQAMDQLHYVTELTHRirsksspdENENEDSADFVSFFPDFVWTLRDFSLDLEA 189
Cdd:cd01851   81 ENDARLFALATLLSSVLIYNMWQTILGDDLDKLMGLLKTALE--------TLGLAGLHNFSKPKPLLLFVVRDFTGPTPL 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 190 DGQPITadeyltyslklkQGTSEKDKNFNLPRLCIRKFFPKKKCFVFDRPVHRKKLAQLEkLHDEELDPEFVQQVADFCS 269
Cdd:cd01851  153 EGLDVT------------EKSETLIEELNKIWSSIRKPFTPITCFVLPHPGLLHKLLQND-GRLKDLPPEFRKALKALRQ 219

                 ....*
gi 383417461 270 YIFSN 274
Cdd:cd01851  220 RFFSS 224
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
314-577 3.03e-05

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 47.27  E-value: 3.03e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   314 VLALAQIENSAAVQKAVAHYEQQMGQKV-----QLPTETLQELldlhRDSEREAIEVFIR-----SSFKDVDHLFQKEL- 382
Cdd:TIGR00618  412 IDTRTSAFRDLQGQLAHAKKQQELQQRYaelcaAAITCTAQCE----KLEKIHLQESAQSlkereQQLQTKEQIHLQETr 487
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   383 AAQLEKKRDDFCKQNQEASSGRCS-----ALLQDIFSPLEEEVKMGIYSkpggyrlFIQKLQDLKKKYHE--EPRKGI-- 453
Cdd:TIGR00618  488 KKAVVLARLLELQEEPCPLCGSCIhpnpaRQDIDNPGPLTRRMQRGEQT-------YAQLETSEEDVYHQltSERKQRas 560
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   454 ---QAEEILQTYLK-------SKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASTKMLQEIQrkNEQMMEQKERSYQ 523
Cdd:TIGR00618  561 lkeQMQEIQQSFSIltqcdnrSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ--DLQDVRLHLQQCS 638
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....
gi 383417461   524 EHLKQLTEKMERDRAQLLKEQERTLALKLQEQERLLKEGFQTESRKMQNEIQDL 577
Cdd:TIGR00618  639 QELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQL 692
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
484-585 1.06e-04

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 45.23  E-value: 1.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 484 EKEIEVERVKAESAQASTKMLQEIQRKNEQMmeQKERSYQEHLKQLTEKMERDRAQLlkeqERTLALKLQEQERLLKEgf 563
Cdd:COG2433  392 EEEPEAEREKEHEERELTEEEEEIRRLEEQV--ERLEAEVEELEAELEEKDERIERL----ERELSEARSEERREIRK-- 463
                         90       100
                 ....*....|....*....|..
gi 383417461 564 QTESRKMQNEIQDLQKKMRQRR 585
Cdd:COG2433  464 DREISRLDREIERLERELEEER 485
YeeP COG3596
Predicted GTPase [General function prediction only];
33-110 1.95e-04

Predicted GTPase [General function prediction only];


Pssm-ID: 442815 [Multi-domain]  Cd Length: 318  Bit Score: 43.60  E-value: 1.95e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 383417461  33 AITQPVVVVAIVGLYRTGKSYLMNKLAGKKngFSLGSTVRSHTKGIwmWCVPHPKKPEHTLVLLDTEGLGDIEKGDNE 110
Cdd:COG3596   34 LVELPPPVIALVGKTGAGKSSLINALFGAE--VAEVGVGRPCTREI--QRYRLESDGLPGLVLLDTPGLGEVNERDRE 107
PTZ00121 PTZ00121
MAEBL; Provisional
379-575 2.18e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 44.36  E-value: 2.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  379 QKELAAQLEKKRDDFCKQNQEASSGRCSALLQDIFSPLEEEVKMGIYSKPGGYRLFIQKLQdLKKKYHEEPRKgiqAEEI 458
Cdd:PTZ00121 1605 KKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAE-EAKKAEEDKKK---AEEA 1680
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  459 LqtylKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASTKMLQEiQRKNEQMMEQKERSYQEHLKQLTE--KMERD 536
Cdd:PTZ00121 1681 K----KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA-EEENKIKAEEAKKEAEEDKKKAEEakKDEEE 1755
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 383417461  537 R---AQLLKEQERTLALKLQEQERLLKEGFQTESRKMQNEIQ 575
Cdd:PTZ00121 1756 KkkiAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD 1797
OmpH smart00935
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ...
487-584 5.21e-04

Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.


Pssm-ID: 214922 [Multi-domain]  Cd Length: 140  Bit Score: 40.64  E-value: 5.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   487 IEVERVKAESAQAsTKMLQEIQRKNEQMMEQKERSYQEhLKQLTEKMERDRAQLLKEQERTLALKLQEQERLLKEGFQTE 566
Cdd:smart00935   4 VDVQKILQESPAG-KAAQKQLEKEFKKRQAELEKLEKE-LQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKL 81
                           90
                   ....*....|....*...
gi 383417461   567 SRKMQNEIQDLQKKMRQR 584
Cdd:smart00935  82 QQDLQKRQQEELQKILDK 99
 
Name Accession Description Interval E-value
GBP pfam02263
Guanylate-binding protein, N-terminal domain; Transcription of the anti-viral ...
18-280 2.20e-167

Guanylate-binding protein, N-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.


Pssm-ID: 460516  Cd Length: 260  Bit Score: 476.48  E-value: 2.20e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   18 NGRLMANPEALKILSAITQPVVVVAIVGLYRTGKSYLMNKLAGKKNGFSLGSTVRSHTKGIWMWCVPHPKKPEHTLVLLD 97
Cdd:pfam02263   1 DHQLELNEEALEILSAITQPVVVVAIAGLYRTGKSFLMNFLAGKLTGFSLGGTVESETKGIWMWCVPHPNKPKHTLVLLD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   98 TEGLGDIEKGDNENDSWIFALAVLLSSTFVYNSMGTINQQAMDQLHYVTELTHRirskSSPDENENEDSADFVSFFPDFV 177
Cdd:pfam02263  81 TEGLGDVEKSDNKNDAWIFALATLLSSTFVYNSSQTINQQALQQLHLVTELTEL----SSPRYGRVADSADFVSFFPDFV 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  178 WTLRDFSLDLEADGQPITADEYLTYSLKLKQGTSEKDKNFNLPRLCIRKFFPKKKCFVFDRPVHRKKL-AQLEKLHDEEL 256
Cdd:pfam02263 157 WTVRDFSLPLEADGGPITGDEYLENRLKLSQGQHEELQNFNLPRLCIRSFFPKRKCFLFDRPGLKKALnPQFEGLREDEL 236
                         250       260
                  ....*....|....*....|....
gi 383417461  257 DPEFVQQVADFCSYIFSNSKTKTL 280
Cdd:pfam02263 237 DPEFQQQLREFCSYILSHSLVKTL 260
GBP_C pfam02841
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral ...
282-578 1.68e-166

Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.


Pssm-ID: 460721 [Multi-domain]  Cd Length: 297  Bit Score: 475.62  E-value: 1.68e-166
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  282 GGIKVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAVAHYEQQMGQKVQLPTETLQELLDLHRDSERE 361
Cdd:pfam02841   1 GGITVTGPRLGSLVQTYVDAINSGAVPCLENAVLALAQIENSAAVQKAIAHYEQQMAQKVKLPTETLQELLDLHRDCEKE 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  362 AIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSGRCSALLQDIFSPLEEEVKMGIYSKPGGYRLFIQKLQDL 441
Cdd:pfam02841  81 AIAVFMKRSFKDENQEFQKELVELLEAKKDDFLKQNEEASSKYCSALLQDLSEPLEEKISQGTFSKPGGYKLFLEERDKL 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  442 KKKYHEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASTKMLQEIQRKNEQMMEQKERS 521
Cdd:pfam02841 161 EAKYNQVPRKGVKAEEVLQEFLQSKEAVEEAILQTDQALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERS 240
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 383417461  522 YQEHLKQLTEKMERDRAQLLKEQERTLALKLQEQERLLKEGFQTESRKMQNEIQDLQ 578
Cdd:pfam02841 241 YQEHVKQLIEKMEAEREQLLAEQERMLEHKLQEQEELLKEGFKTEAESLQKEIQDLK 297
GBP_C cd16269
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ...
288-578 3.55e-152

Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.


Pssm-ID: 293879 [Multi-domain]  Cd Length: 291  Bit Score: 438.93  E-value: 3.55e-152
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 288 GPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAVAHYEQQMGQKVQLPTETLQELLDLHRDSEREAIEVFI 367
Cdd:cd16269    1 GRRLGTLVETYVDAINSGAVPCLENAVLALAQIENSAAVQKALAHYEEQMEQRVQLPTETLQELLDLHAACEKEALEVFM 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 368 RSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSGRCSALLQDIFSPLEEEVKMGIYSKPGGYRLFIQKLQDLKKKYHE 447
Cdd:cd16269   81 KRSFKDEDQKFQKKLMEQLEEKKEEFCKQNEEASSKRCQALLQELSAPLEEKISQGSYSVPGGYQLYLEDREKLVEKYRQ 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 448 EPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASTKMLQEIQRKNEQMMEQKERSYQEHLK 527
Cdd:cd16269  161 VPRKGVKAEEVLQEFLQSKEAEAEAILQADQALTEKEKEIEAERAKAEAAEQERKLLEEQQRELEQKLEDQERSYEEHLR 240
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 383417461 528 QLTEKMERDRAQLLKEQERTLALKLQEQERLLKEGFQTESRKMQNEIQDLQ 578
Cdd:cd16269  241 QLKEKMEEERENLLKEQERALESKLKEQEALLEEGFKEQAELLQEEIRSLK 291
GBP cd01851
Guanylate-binding protein (GBP) family (N-terminal domain); Guanylate-binding protein (GBP), ...
32-274 7.77e-79

Guanylate-binding protein (GBP) family (N-terminal domain); Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein (GAP) cannot approach.


Pssm-ID: 206650  Cd Length: 224  Bit Score: 248.39  E-value: 7.77e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  32 SAITQPVVVVAIVGLYRTGKSYLMNKLAGKKNGFSLGSTVRSHTKGIWMWCVPHP--KKPEHTLVLLDTEGLGDIEKGDN 109
Cdd:cd01851    1 LDVGFPVVVVSVFGSQSSGKSFLLNHLFGTSDGFDVMDTSQQTTKGIWMWSDPFKdtDGKKHAVLLLDTEGTDGRERGEF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 110 ENDSWIFALAVLLSSTFVYNSMGTINQQAMDQLHYVTELTHRirsksspdENENEDSADFVSFFPDFVWTLRDFSLDLEA 189
Cdd:cd01851   81 ENDARLFALATLLSSVLIYNMWQTILGDDLDKLMGLLKTALE--------TLGLAGLHNFSKPKPLLLFVVRDFTGPTPL 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 190 DGQPITadeyltyslklkQGTSEKDKNFNLPRLCIRKFFPKKKCFVFDRPVHRKKLAQLEkLHDEELDPEFVQQVADFCS 269
Cdd:cd01851  153 EGLDVT------------EKSETLIEELNKIWSSIRKPFTPITCFVLPHPGLLHKLLQND-GRLKDLPPEFRKALKALRQ 219

                 ....*
gi 383417461 270 YIFSN 274
Cdd:cd01851  220 RFFSS 224
Ras_like_GTPase cd00882
Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like ...
42-117 3.13e-09

Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions.


Pssm-ID: 206648 [Multi-domain]  Cd Length: 161  Bit Score: 56.31  E-value: 3.13e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 383417461  42 AIVGLYRTGKSYLMNKLAGKKngFSLGSTVRSHTKGIWMWCVPHpKKPEHTLVLLDTEGLGDIEKGDNENDSWIFA 117
Cdd:cd00882    1 VVVGRGGVGKSSLLNALLGGE--VGEVSDVPGTTRDPDVYVKEL-DKGKVKLVLVDTPGLDEFGGLGREELARLLL 73
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
314-577 3.03e-05

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 47.27  E-value: 3.03e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   314 VLALAQIENSAAVQKAVAHYEQQMGQKV-----QLPTETLQELldlhRDSEREAIEVFIR-----SSFKDVDHLFQKEL- 382
Cdd:TIGR00618  412 IDTRTSAFRDLQGQLAHAKKQQELQQRYaelcaAAITCTAQCE----KLEKIHLQESAQSlkereQQLQTKEQIHLQETr 487
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   383 AAQLEKKRDDFCKQNQEASSGRCS-----ALLQDIFSPLEEEVKMGIYSkpggyrlFIQKLQDLKKKYHE--EPRKGI-- 453
Cdd:TIGR00618  488 KKAVVLARLLELQEEPCPLCGSCIhpnpaRQDIDNPGPLTRRMQRGEQT-------YAQLETSEEDVYHQltSERKQRas 560
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   454 ---QAEEILQTYLK-------SKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASTKMLQEIQrkNEQMMEQKERSYQ 523
Cdd:TIGR00618  561 lkeQMQEIQQSFSIltqcdnrSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ--DLQDVRLHLQQCS 638
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....
gi 383417461   524 EHLKQLTEKMERDRAQLLKEQERTLALKLQEQERLLKEGFQTESRKMQNEIQDL 577
Cdd:TIGR00618  639 QELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQL 692
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
445-585 6.66e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 45.88  E-value: 6.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  445 YHEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASTKMLQEIQRKNEQMMEQKERsyQE 524
Cdd:pfam17380 336 YAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEER--QR 413
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 383417461  525 HLKQLTEKMERDRAQllKEQERTLALKLQEQERLLK-EGFQTESRKMQNEIQDLQKKMRQRR 585
Cdd:pfam17380 414 KIQQQKVEMEQIRAE--QEEARQREVRRLEEERAREmERVRLEEQERQQQVERLRQQEEERK 473
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
485-581 6.80e-05

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 45.94  E-value: 6.80e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   485 KEIEVERVKaESAQASTKMLQEIQRKNEQMMEQKERsYQEHLKQLTE---KMERDRAQLL-KEQErtLALKLQEQERLLK 560
Cdd:pfam01576   10 KEEELQKVK-ERQQKAESELKELEKKHQQLCEEKNA-LQEQLQAETElcaEAEEMRARLAaRKQE--LEEILHELESRLE 85
                           90       100
                   ....*....|....*....|....*..
gi 383417461   561 E------GFQTESRKMQNEIQDLQKKM 581
Cdd:pfam01576   86 EeeersqQLQNEKKKMQQHIQDLEEQL 112
F-BAR_FCHO cd07648
The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins; ...
434-557 9.12e-05

The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins; F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.


Pssm-ID: 153332 [Multi-domain]  Cd Length: 261  Bit Score: 44.64  E-value: 9.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 434 FIQKLQDLKK---KYHEEPRKGiqaeeilQTYLKSKESMTDAILQTDQTLT---EKEKEI----EVERVKAESAQASTKm 503
Cdd:cd07648   79 LVQKLQELIKdvqKYGEEQHKK-------HKKVKEEESGTAEAVQAIQTTTaalQKAKEAyharCLELERLRRENASPK- 150
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 383417461 504 lqEIQRkneqmMEQKERSYQEHLKQLTEKMERDRAQLLKEQERTlALKLQEQER 557
Cdd:cd07648  151 --EIEK-----AEAKLKKAQDEYKALVEKYNNIRADFETKMTDS-CKRFQEIEE 196
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
484-585 1.06e-04

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 45.23  E-value: 1.06e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 484 EKEIEVERVKAESAQASTKMLQEIQRKNEQMmeQKERSYQEHLKQLTEKMERDRAQLlkeqERTLALKLQEQERLLKEgf 563
Cdd:COG2433  392 EEEPEAEREKEHEERELTEEEEEIRRLEEQV--ERLEAEVEELEAELEEKDERIERL----ERELSEARSEERREIRK-- 463
                         90       100
                 ....*....|....*....|..
gi 383417461 564 QTESRKMQNEIQDLQKKMRQRR 585
Cdd:COG2433  464 DREISRLDREIERLERELEEER 485
YeeP COG3596
Predicted GTPase [General function prediction only];
33-110 1.95e-04

Predicted GTPase [General function prediction only];


Pssm-ID: 442815 [Multi-domain]  Cd Length: 318  Bit Score: 43.60  E-value: 1.95e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 383417461  33 AITQPVVVVAIVGLYRTGKSYLMNKLAGKKngFSLGSTVRSHTKGIwmWCVPHPKKPEHTLVLLDTEGLGDIEKGDNE 110
Cdd:COG3596   34 LVELPPPVIALVGKTGAGKSSLINALFGAE--VAEVGVGRPCTREI--QRYRLESDGLPGLVLLDTPGLGEVNERDRE 107
PTZ00121 PTZ00121
MAEBL; Provisional
379-575 2.18e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 44.36  E-value: 2.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  379 QKELAAQLEKKRDDFCKQNQEASSGRCSALLQDIFSPLEEEVKMGIYSKPGGYRLFIQKLQdLKKKYHEEPRKgiqAEEI 458
Cdd:PTZ00121 1605 KKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAE-EAKKAEEDKKK---AEEA 1680
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  459 LqtylKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASTKMLQEiQRKNEQMMEQKERSYQEHLKQLTE--KMERD 536
Cdd:PTZ00121 1681 K----KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKA-EEENKIKAEEAKKEAEEDKKKAEEakKDEEE 1755
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 383417461  537 R---AQLLKEQERTLALKLQEQERLLKEGFQTESRKMQNEIQ 575
Cdd:PTZ00121 1756 KkkiAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD 1797
ClassIIa_HDAC_Gln-rich-N cd10149
Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, ...
477-556 4.88e-04

Glutamine-rich N-terminal helical domain of various Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9); This superfamily consists of a glutamine-rich N-terminal helical extension to certain Class IIa histone deacetylases (HDACs), including HDAC4, HDAC5 and HDAC9; it is missing in HDAC7. It is referred to as the glutamine-rich domain, and confers responsiveness to calcium signals and mediates interactions with transcription factors and cofactors. This domain is able to repress transcription independently of the HDAC's C-terminal, zinc-dependent catalytic domain. It has many intra- and inter-helical interactions which are possibly involved in reversible assembly and disassembly of proteins. HDACs regulate diverse cellular processes through enzymatic deacetylation of histone as well as non-histone proteins, in particular deacetylating N(6)-acetyl-lysine residues.


Pssm-ID: 197397 [Multi-domain]  Cd Length: 90  Bit Score: 39.29  E-value: 4.88e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 477 DQTLTEKEKEIEVERVKAESAQASTKMLQEIQRKNEQMMEQKERSYQEHLKQLTEKMERDRAQLLKEQERTLALKLQEQE 556
Cdd:cd10149    1 DPVLREQQLQQELLALKQQQQIQKQLLIAEFQKQHENLTRQHEAQLQEHIKQQQEMLAIKQQQELLEKQRKLEQQRQEQE 80
OmpH smart00935
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ...
487-584 5.21e-04

Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.


Pssm-ID: 214922 [Multi-domain]  Cd Length: 140  Bit Score: 40.64  E-value: 5.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   487 IEVERVKAESAQAsTKMLQEIQRKNEQMMEQKERSYQEhLKQLTEKMERDRAQLLKEQERTLALKLQEQERLLKEGFQTE 566
Cdd:smart00935   4 VDVQKILQESPAG-KAAQKQLEKEFKKRQAELEKLEKE-LQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKL 81
                           90
                   ....*....|....*...
gi 383417461   567 SRKMQNEIQDLQKKMRQR 584
Cdd:smart00935  82 QQDLQKRQQEELQKILDK 99
PRK12704 PRK12704
phosphodiesterase; Provisional
458-584 5.87e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 42.84  E-value: 5.87e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 458 ILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASTKMLQEIQRKNEQMMEQKERsyqehLKQLTEKMERdR 537
Cdd:PRK12704  28 IAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKR-----LLQKEENLDR-K 101
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 383417461 538 AQLLKEQERTLALKLQEQERLLKEGfqtesRKMQNEIQDLQKKMRQR 584
Cdd:PRK12704 102 LELLEKREEELEKKEKELEQKQQEL-----EKKEEELEELIEEQLQE 143
Laminin_I pfam06008
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from ...
436-583 6.63e-04

Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure.


Pssm-ID: 310534 [Multi-domain]  Cd Length: 258  Bit Score: 41.63  E-value: 6.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  436 QKLQDLKKKYHEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEieVERVKAESAQASTKMLQEIQRKNEQMM 515
Cdd:pfam06008  54 QETEELQKKATQTLAKAQQVNAESERTLGHAKELAEAIKNLIDNIKEINEK--VATLGENDFALPSSDLSRMLAEAQRML 131
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 383417461  516 EQ-KERSYQEHLKQLTEkmERDRAQLLKEQERTLALKLQEQERLLKEGFQTESRKMQNEIQDLQKKMRQ 583
Cdd:pfam06008 132 GEiRSRDFGTQLQNAEA--ELKAAQDLLSRIQTWFQSPQEENKALANALRDSLAEYEAKLSDLRELLRE 198
CCDC22 pfam05667
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ...
436-583 1.01e-03

Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.


Pssm-ID: 461708 [Multi-domain]  Cd Length: 600  Bit Score: 41.94  E-value: 1.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  436 QKLQDLKKKYHEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEV-ERVKAESAQASTKMlQEIQRKNEQM 514
Cdd:pfam05667 335 EELEELQEQLEDLESSIQELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVkKKTLDLLPDAEENI-AKLQALVDAS 413
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 383417461  515 MEQkersyqehLKQLTEKMERDRAQLLKEQERtlaLKLQEQERLLKEgfqteSRKMQnEIQDLQKKMRQ 583
Cdd:pfam05667 414 AQR--------LVELAGQWEKHRVPLIEEYRA---LKEAKSNKEDES-----QRKLE-EIKELREKIKE 465
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
454-585 1.03e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 42.23  E-value: 1.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 454 QAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASTKMLQEIQRKNEQMMEQKERSyQEHLKQLTEKM 533
Cdd:COG1196  236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD-IARLEERRREL 314
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 383417461 534 ERDRAQLLKEQERTLALKLQEQERLLKEgfQTESRKMQNEIQDLQKKMRQRR 585
Cdd:COG1196  315 EERLEELEEELAELEEELEELEEELEEL--EEELEEAEEELEEAEAELAEAE 364
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
436-585 1.34e-03

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 41.42  E-value: 1.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  436 QKLQDLKKKYHEEPRKGIQAEEILQTYLKSKESMTDAILQTD---QTLTEK--EKEIEVERVKaESAQASTKMLQEIQRK 510
Cdd:pfam07888  94 EKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEediKTLTQRvlERETELERMK-ERAKKAGAQRKEEEAE 172
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 383417461  511 NEQmMEQKERSYQEHLKQLTEKMERDRAQLlkEQERTLALKLQEQERLLKEGFQTESRKmQNEIQDLQKKMRQRR 585
Cdd:pfam07888 173 RKQ-LQAKLQQTEEELRSLSKEFQELRNSL--AQRDTQVLQLQDTITTLTQKLTTAHRK-EAENEALLEELRSLQ 243
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
478-584 1.52e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 41.74  E-value: 1.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 478 QTLTEKEKEIEVERVKAESAqastkmLQEIQRKNEQMMEQKErSYQEHLKQLTEKMERDRAQLLKEQERTLALKLQEQER 557
Cdd:PRK00409 523 ASLEELERELEQKAEEAEAL------LKEAEKLKEELEEKKE-KLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQ 595
                         90       100
                 ....*....|....*....|....*..
gi 383417461 558 LLKEGFQTESRKmqnEIQDLQKKMRQR 584
Cdd:PRK00409 596 LQKGGYASVKAH---ELIEARKRLNKA 619
RHD3_GTPase pfam05879
Root hair defective 3 GTP-binding protein (RHD3) GTPase domain; This is the GTPase domain of ...
49-120 1.58e-03

Root hair defective 3 GTP-binding protein (RHD3) GTPase domain; This is the GTPase domain of several eukaryotic root hair defective 3 (RHD3) like GTP-binding proteins, including RHD3 from Arabidopsis and Sey1 from yeast, which are involved in homotypic membrane fusion of the endoplasmic reticulum. This domain binds GTP and forms dimers with other molecule for membrane tethering.


Pssm-ID: 461768  Cd Length: 243  Bit Score: 40.51  E-value: 1.58e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 383417461   49 TGKSYLMNKLAGKKngFSLGSTV--RSHTKGIWMWCVPHPKKPEHTLVLLDTEGLGDIEKG---DNENDSWIFALAV 120
Cdd:pfam05879   6 TGKSTLLNHLFGTN--FSVMDASgrQQTTKGIWLAKCKGIGNMEPNILVMDVEGTDGRERGedqDFERKSALFALAT 80
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
453-585 2.17e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.08  E-value: 2.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 453 IQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQAS-TKMLQEIQRKNEQMMEQKERSYQEHLKQLTE 531
Cdd:COG1196  312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAElAEAEEALLEAEAELAEAEEELEELAEELLEA 391
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 383417461 532 KMER-DRAQLLKEQERTLALKLQEQERLLKEGFQTESRKMQNEIQDLQKKMRQRR 585
Cdd:COG1196  392 LRAAaELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
432-585 2.95e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.81  E-value: 2.95e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   432 RLFIQKLQDLKKKYHeeprkgiQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASTKML-QEIQRK 510
Cdd:TIGR02168  228 ALLVLRLEELREELE-------ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALaNEISRL 300
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   511 NEQMMEQKER---------SYQEHLKQLTEKMERDRAQL--LKEQERTLALKLQEQERLLKEgFQTESRKMQNEIQDLQK 579
Cdd:TIGR02168  301 EQQKQILRERlanlerqleELEAQLEELESKLDELAEELaeLEEKLEELKEELESLEAELEE-LEAELEELESRLEELEE 379

                   ....*.
gi 383417461   580 KMRQRR 585
Cdd:TIGR02168  380 QLETLR 385
Caldesmon pfam02029
Caldesmon;
442-575 3.26e-03

Caldesmon;


Pssm-ID: 460421 [Multi-domain]  Cd Length: 495  Bit Score: 40.24  E-value: 3.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  442 KKKYHEEpRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVErvkaesaqastKMLQEIQRKN----EQMMEQ 517
Cdd:pfam02029 200 QKRGHPE-VKSQNGEEEVTKLKVTTKRRQGGLSQSQEREEEAEVFLEAE-----------QKLEELRRRRqekeSEEFEK 267
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 383417461  518 KERSYQE---HLKQLTEKMERDRaQLLKEQERtlALKLQEQERLLKEgfQTESRKMQNEIQ 575
Cdd:pfam02029 268 LRQKQQEaelELEELKKKREERR-KLLEEEEQ--RRKQEEAERKLRE--EEEKRRMKEEIE 323
PTZ00121 PTZ00121
MAEBL; Provisional
379-585 3.70e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.51  E-value: 3.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  379 QKELAAQLEKKRDDFCKQNQEASSGRCSALLQDIFSPLEEEVKMGIYSKPGGYRLfiQKLQDLKKKyHEEPRKGIQAEEI 458
Cdd:PTZ00121 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA--KKADEAKKK-AEEAKKAEEAKKK 1465
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  459 LQTYLKSKESMTDAilQTDQTLTEKEKEIEVERVKAESAqastKMLQEIQRKNEQMMEQKERSYQEHLKQLTEKMERDRA 538
Cdd:PTZ00121 1466 AEEAKKADEAKKKA--EEAKKADEAKKKAEEAKKKADEA----KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 383417461  539 QLLKEQERTLALKLQEQERLLKEGFQTESRKMQNEiqdlQKKMRQRR 585
Cdd:PTZ00121 1540 KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE----DKNMALRK 1582
ClassIIa_HDAC4_Gln-rich-N cd10162
Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase; This ...
477-556 4.01e-03

Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase; This family consists of the glutamine-rich domain of histone deacetylase 4 (HDAC4). It belongs to a superfamily that consists of the glutamine-rich N-terminal helical extension to certain Class IIa histone deacetylases (HDACs), including HDAC4, HDAC5 and HDCA9; it is missing from HDAC7. This domain confers responsiveness to calcium signals and mediates interactions with transcription factors and cofactors, and it is able to repress transcription independently of the HDAC C-terminal, zinc-dependent catalytic domain. It has many intra- and inter-helical interactions which are possibly involved in reversible assembly and disassembly of proteins. HDACs regulate diverse cellular processes through enzymatic deacetylation of histone as well as non-histone proteins, in particular deacetylating N(6)-acetyl-lysine residues.


Pssm-ID: 197398 [Multi-domain]  Cd Length: 90  Bit Score: 36.71  E-value: 4.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461 477 DQTLTEKEKEIEVERVKAESAQASTKMLQEIQRKNEQMMEQKERSYQEHLKQLTEKMERDRAQLLKEQERTLALKLQEQE 556
Cdd:cd10162    1 EPALREQQLQQELLALKQKQQIQRQLLIAEFQRQHEQLSRQHEAQLHEHIKQQQELLAMKHQQELLEHQRKLERHRQEQE 80
Nup88 pfam10168
Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal ...
435-579 5.63e-03

Nuclear pore component; Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein has no obvious structural motifs but is the region for binding to Nup98, one of the components of the nuclear pore. the C-terminal end is a predicted coiled-coil domain. Nup88 is overexpressed in tumour cells.


Pssm-ID: 462975 [Multi-domain]  Cd Length: 713  Bit Score: 39.64  E-value: 5.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461  435 IQKLQDLKkkYHEEPRKGIQ--AEEILQTYLKSKEsmtdailqtdqtltekEKEIEVERVKA--ESAQASTKMLQEIQR- 509
Cdd:pfam10168 571 EQQLQELQ--SLEEERKSLSerAEKLAEKYEEIKD----------------KQEKLMRRCKKvlQRLNSQLPVLSDAERe 632
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 383417461  510 --KNEQMMEQKERSYQEHLKQLTEKMERDRAQLLKEQE--RTLALKL-QEQERLLKEGFQTESRKMQNEIQDLQK 579
Cdd:pfam10168 633 mkKELETINEQLKHLANAIKQAKKKMNYQRYQIAKSQSirKKSSLSLsEKQRKTIKEILKQLGSEIDELIKQVKD 707
SMC_N pfam02463
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ...
432-585 6.05e-03

RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.


Pssm-ID: 426784 [Multi-domain]  Cd Length: 1161  Bit Score: 39.57  E-value: 6.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   432 RLFIQKLQDLKKKYHEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASTKMLQEIQRKN 511
Cdd:pfam02463  240 DLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKES 319
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 383417461   512 EQMMEQKersyQEHLKQLTEKMERdRAQLLKEQERTLALKLQEQERLLKEgfQTESRKMQNEIQDLQKKMRQRR 585
Cdd:pfam02463  320 EKEKKKA----EKELKKEKEEIEE-LEKELKELEIKREAEEEEEEELEKL--QEKLEQLEEELLAKKKLESERL 386
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
436-587 6.57e-03

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 39.77  E-value: 6.57e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   436 QKLQDLKKKYHEE--PRKGIQAEEIlQTYLKSKESMTDAILQTDQ-TLTEKEKEIEVERVKAESAQAS-----TKMLQEI 507
Cdd:pfam01576  103 QHIQDLEEQLDEEeaARQKLQLEKV-TTEAKIKKLEEDILLLEDQnSKLSKERKLLEERISEFTSNLAeeeekAKSLSKL 181
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 383417461   508 QRKNEQMM---------EQKERSYQEHLKQ--------LTEKMERDRAQLL--------KEQERTLALKLQEQERLLKEG 562
Cdd:pfam01576  182 KNKHEAMIsdleerlkkEEKGRQELEKAKRklegestdLQEQIAELQAQIAelraqlakKEEELQAALARLEEETAQKNN 261
                          170       180
                   ....*....|....*....|....*
gi 383417461   563 FQTESRKMQNEIQDLQKKMRQRRTC 587
Cdd:pfam01576  262 ALKKIRELEAQISELQEDLESERAA 286
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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