|
Name |
Accession |
Description |
Interval |
E-value |
| Rab_bind |
pfam16704 |
Rab binding domain; This coiled-coil domain, found in GRIP and coiled-coil domain-containing ... |
1550-1614 |
1.52e-26 |
|
Rab binding domain; This coiled-coil domain, found in GRIP and coiled-coil domain-containing protein 2 and RANBP2-like and GRIP domain-containing protein, has been shown to bind to Rab in GRIP and coiled-coil domain-containing protein 2.
Pssm-ID: 435531 Cd Length: 65 Bit Score: 104.05 E-value: 1.52e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 380818270 1550 EPPLWHAEFTKEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQEREKS 1614
Cdd:pfam16704 1 EPFVWTVEPSKSELTQKLSTTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQEREKS 65
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
805-1480 |
3.21e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.64 E-value: 3.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 805 DKKVFELEKEIKCLQEEsvvqCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEE 884
Cdd:TIGR02168 273 RLEVSELEEEIEELQKE----LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 885 VSQTCNKNEIHNEKEKcsiKEHENLKPLLEQKESELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKE 964
Cdd:TIGR02168 349 LKEELESLEAELEELE---AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 965 KEEKINKIKLVAVKA-----KKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEK 1039
Cdd:TIGR02168 426 LLKKLEEAELKELQAeleelEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFS 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1040 ERANNFEHHVEDLTRQLrnsTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEK-------LQK 1112
Cdd:TIGR02168 506 EGVKALLKNQSGLSGIL---GVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRvtflpldSIK 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1113 EQKIK----EHATTVNELEELQVQLQKEKKQLQKTMQEL---ELVKKDAQQTTLMNMEIADYERLM-------------- 1171
Cdd:TIGR02168 583 GTEIQgndrEILKNIEGFLGVAKDLVKFDPKLRKALSYLlggVLVVDDLDNALELAKKLRPGYRIVtldgdlvrpggvit 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1172 ---KELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIK-------QLLVKTKKELADSKQAE 1241
Cdd:TIGR02168 663 ggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRkeleelsRQISALRKDLARLEAEV 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1242 TDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEH---LKTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATV 1318
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEieeLEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1319 TSEFESYKVRVHNVLKQ----QKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQMNVSELQTLQSEHDTLLER 1394
Cdd:TIGR02168 823 RERLESLERRIAATERRledlEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1395 HNKMLQETVSKEAELREKlcsiqsenMMMKSEHTQTVSQLTSQNEVLRNSFRDQVRHLQEEHRKTVETLQQQLSRVEAQL 1474
Cdd:TIGR02168 903 LRELESKRSELRRELEEL--------REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRL 974
|
....*.
gi 380818270 1475 FQLKNE 1480
Cdd:TIGR02168 975 KRLENK 980
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
430-1223 |
1.89e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.33 E-value: 1.89e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 430 KEQHQKEISELNETfLSDSEKEKLTLMFEIQGLKEQCDNLQQEKQEailnyesLREIMEILQTELGESAGKISqEFESMK 509
Cdd:TIGR02168 234 LEELREELEELQEE-LKEAEEELEELTAELQELEEKLEELRLEVSE-------LEEEIEELQKELYALANEIS-RLEQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 510 QQQASDVHELQQKLRTAFTEKDALLETVNHLQgenEKLLSQQELVPELENTIKNLEEKngvyllsLSQRDTMLKELEAKI 589
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQLEELESKLDELA---EELAELEEKLEELKEELESLEAE-------LEELEAELEELESRL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 590 NSLTEEKDDFINKLKTSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQK-----VNELTGGLEETLKEKDQNDQ 664
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKleeaeLKELQAELEELEEELEELQE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 665 KLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKNDVI---------------LKEHItELEK 729
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKallknqsglsgilgvLSELI-SVDE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 730 KLQLMVEE--RDNLNKLL-ENEQVQKLFVktqlyGFLKDmgsevsedgEEKDVVNILQAVSESLAKINEEKCNLVFQCDK 806
Cdd:TIGR02168 534 GYEAAIEAalGGRLQAVVvENLNAAKKAI-----AFLKQ---------NELGRVTFLPLDSIKGTEIQGNDREILKNIEG 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 807 KVFELEKEIKCLQEES---------VVQCEELKSLLRDY----------------------------EQEKVLL--RKEL 847
Cdd:TIGR02168 600 FLGVAKDLVKFDPKLRkalsyllggVLVVDDLDNALELAkklrpgyrivtldgdlvrpggvitggsaKTNSSILerRREI 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 848 EEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEvsqtcnkneihnekekcsikehenLKPLLEQKESELRDTRAEL 927
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQ------------------------LRKELEELSRQISALRKDL 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 928 ILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAVKAKKELDSSRKETQTVREELESLRSEKDQL 1007
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1008 SASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERAnnfEHHVEDLTRQLRNSTLQCEKINSDNEDLLARIETLQSNAKLL 1087
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEEL---SEDIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1088 EVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQL-QKTMQELELVKKDAQQTTlmnMEIAD 1166
Cdd:TIGR02168 893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLsEEYSLTLEEAEALENKIE---DDEEE 969
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*..
gi 380818270 1167 YERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKI 1223
Cdd:TIGR02168 970 ARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
448-1211 |
3.37e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 3.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 448 SEKEKLTLMFEIQGLKEQCDNLQQEKQEAilnyeslREIMEILQTELGESAGKISqEFESMKQQQASDVHELQQKLRTAF 527
Cdd:TIGR02168 223 RELELALLVLRLEELREELEELQEELKEA-------EEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 528 TEKDALLETVNHLQGENEKLLSQQElvpELENTIKNLEEKNGVYLLSLSQRDTMLKELEAKINSLTEEKDDFINKLKTSY 607
Cdd:TIGR02168 295 NEISRLEQQKQILRERLANLERQLE---ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 608 EEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLmvQMKVLSEDKEVLSAEV 687
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEEL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 688 KSLYEENNKLSSEKKQLSRDLEVflsqkndviLKEHITELEKKLQLMVEERDNLNKLLENEQ------VQKLFVKTQLYG 761
Cdd:TIGR02168 450 EELQEELERLEEALEELREELEE---------AEQALDAAERELAQLQARLDSLERLQENLEgfsegvKALLKNQSGLSG 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 762 FLKDMGSEVS-EDGEEKDVVNILQAVSESLAKINEEKCNLVFQCDKKVFELEKEIKCLQEESVVQCEELKSLLRDYEQEK 840
Cdd:TIGR02168 521 ILGVLSELISvDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 841 VLLRKELEEIQSEKEALQSDLL-------EMKNANEKTRLENQNLLIQVEEvSQTCNKNEIhnekekcSIKEHENLKPLL 913
Cdd:TIGR02168 601 LGVAKDLVKFDPKLRKALSYLLggvlvvdDLDNALELAKKLRPGYRIVTLD-GDLVRPGGV-------ITGGSAKTNSSI 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 914 EQKESELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKiklvavkAKKELDSSRKETQTV 993
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA-------LRKDLARLEAEVEQL 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 994 REELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEkerannfehhVEDLTRQLRNSTLQCEKINSDNEDL 1073
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ----------IEQLKEELKALREALDELRAELTLL 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1074 LARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKD 1153
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 380818270 1154 AQQttlMNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQS 1211
Cdd:TIGR02168 896 LEE---LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
|
| GRIP |
pfam01465 |
GRIP domain; The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain is found in ... |
1615-1658 |
7.58e-12 |
|
GRIP domain; The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi. The GRIP domain contains a completely conserved tyrosine residue. At least some of these domains have been shown to bind to GTPase Arl1, see structures in.
Pssm-ID: 460221 [Multi-domain] Cd Length: 44 Bit Score: 61.22 E-value: 7.58e-12
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 380818270 1615 AANLEYLKNVLLQFIFLKPGSERERLLPVINTMLQLSPEEKGKL 1658
Cdd:pfam01465 1 GANLEYLKNVLLQFLESKESSERKQLLPVIATLLKFSPEEEQKI 44
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
67-748 |
2.32e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 2.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 67 TDDIIKALTERLDAILLEKAETEQQCLSLKKENIKMKQEVEDSVTKMEDAHKE---LEQSHINYVKETENLKNELMAVRA 143
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEisrLEQQKQILRERLANLERQLEELEA 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 144 KYSEDKA---NLQKELEEAMNKQLELSEQLKFQNNSEDNVKKLQEEIEKIRPAFEEQILYLQKQLDattdEKKETVTQLQ 220
Cdd:TIGR02168 324 QLEELESkldELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA----QLELQIASLN 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 221 NIIEANSQHyqknINSLQEELLQLKAIHQEEVKELMcqiEASAKEHETEINKLNELKENLVKQCEASEKNIQEKYECELE 300
Cdd:TIGR02168 400 NEIERLEAR----LERLEDRRERLQQEIEELLKKLE---EAELKELQAELEELEEELEELQEELERLEEALEELREELEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 301 NLRKATSNANQDNQMCSLLFQENTFVEQV--VNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFH 378
Cdd:TIGR02168 473 AEQALDAAERELAQLQARLDSLERLQENLegFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 379 EREDLEFKINELLLAKEEQGCVIEKLKSEL-AGLNKQFCCTVEQHNKEVQSLKE--QHQKEISELNETFLSDS------- 448
Cdd:TIGR02168 553 ENLNAAKKAIAFLKQNELGRVTFLPLDSIKgTEIQGNDREILKNIEGFLGVAKDlvKFDPKLRKALSYLLGGVlvvddld 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 449 ------------------EKEKLTLMFEIQGLKEQCDNLQQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQ 510
Cdd:TIGR02168 633 nalelakklrpgyrivtlDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEE 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 511 QqasdVHELQQKLRTAFTEKDALLETVNHLQGENEKLLSQQElvpELENTIKNLEEKNGVYLLSLSQRDTMLKELEAKIN 590
Cdd:TIGR02168 713 E----LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA---QLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 591 SLTEEKDDFINKLKTSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLM 670
Cdd:TIGR02168 786 ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELE 865
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 671 VQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKNDVI-----LKEHITELEKKLQLMVEERDNLNKLL 745
Cdd:TIGR02168 866 ELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRreleeLREKLAQLELRLEGLEVRIDNLQERL 945
|
...
gi 380818270 746 ENE 748
Cdd:TIGR02168 946 SEE 948
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
96-948 |
3.01e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 3.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 96 KKENIKMKQEVEDSVTKMEDAHKELEQSHINYVKETE------NLKNELMAVRAKYSEDKAN-LQKELEEAMNKQLELSE 168
Cdd:TIGR02168 174 RKETERKLERTRENLDRLEDILNELERQLKSLERQAEkaerykELKAELRELELALLVLRLEeLREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 169 QLKfqnNSEDNVKKLQEEIEKIRPAF---EEQILYLQKQLDATTDEKKETVTQLQnIIEANSQHYQKNINSLQEELLQLK 245
Cdd:TIGR02168 254 ELE---ELTAELQELEEKLEELRLEVselEEEIEELQKELYALANEISRLEQQKQ-ILRERLANLERQLEELEAQLEELE 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 246 AiHQEEVKELMCQIEASAKEHETEINKLNELKENLVKQCEASEKNIQEKYEcELENLRKATSNANQDnqmcsllfqentf 325
Cdd:TIGR02168 330 S-KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE-QLETLRSKVAQLELQ------------- 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 326 vEQVVNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIK-DEFFHEREDLEFKINELLLAKEEQGCVIEKL 404
Cdd:TIGR02168 395 -IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEELREELEEA 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 405 KSELAGLNKQFCcTVEQHNKEVQSLKEQHQKEISELNETFLSDSEKEkltlmfEIQGLKEQCDNLQQEKQEAILNYeslr 484
Cdd:TIGR02168 474 EQALDAAERELA-QLQARLDSLERLQENLEGFSEGVKALLKNQSGLS------GILGVLSELISVDEGYEAAIEAA---- 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 485 eIMEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNHLQGENEKLLSQQELVPELENTIKNL 564
Cdd:TIGR02168 543 -LGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYL 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 565 eeKNGVYLL-SLSQRDTMLKELEAKINSLTEEkDDFINKLKTSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQ 643
Cdd:TIGR02168 622 --LGGVLVVdDLDNALELAKKLRPGYRIVTLD-GDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEK 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 644 KVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKND-----V 718
Cdd:TIGR02168 699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEaeeelA 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 719 ILKEHITELEKKLQLMVEERDNLNKLLENEQVQKLFVKTQLYGFLKDMGSEVSEDGEEKDVVNILQAVSESLAKINEEKC 798
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 799 NLVFQCDKKVFELEKEIKCLQEESVVQCEELKSLLRDYEQekvlLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNL 878
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLNERASLEEALALLRSELEE----LSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 879 LIQVEevsqtcNKNEIHNEKEKCSIKEHENLKPLLEQKESELRDtraELILLKDSLAKSPSV------------------ 940
Cdd:TIGR02168 935 EVRID------NLQERLSEEYSLTLEEAEALENKIEDDEEEARR---RLKRLENKIKELGPVnlaaieeyeelkerydfl 1005
|
890
....*....|.
gi 380818270 941 ---QNDLLSSV 948
Cdd:TIGR02168 1006 taqKEDLTEAK 1016
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
609-1419 |
6.56e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 6.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 609 EMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVK 688
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 689 SlyeennkLSSEKKQLSRDLEVFLSQKNDviLKEHITELEKKLQLMVEERDNLNKLLENEQVQKlfvktqlygflkdmgs 768
Cdd:TIGR02168 313 N-------LERQLEELEAQLEELESKLDE--LAEELAELEEKLEELKEELESLEAELEELEAEL---------------- 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 769 EVSEDGEEKdvvniLQAVSESLAkineekcnlvfqcdKKVFELEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLRKELE 848
Cdd:TIGR02168 368 EELESRLEE-----LEEQLETLR--------------SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 849 EIQS-EKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCNKNEIHNEKEKCSIKEHENLKPLLEQKESELRDTRAEL 927
Cdd:TIGR02168 429 KLEEaELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 928 ILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAVKAKKELDSSRKETQTVREELESLRSEKDQl 1007
Cdd:TIGR02168 509 KALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQ- 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1008 sASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERANNFEHHVEDLTR--QLRNSTLQCEKINSDNEDLLARIETLQSNAK 1085
Cdd:TIGR02168 588 -GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNalELAKKLRPGYRIVTLDGDLVRPGGVITGGSA 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1086 LLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTT----LMN 1161
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEaeveQLE 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1162 MEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAE 1241
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1242 TDHLILQASLKGELEASQQQVEVYKIQLAEITSEkhkiHEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTSE 1321
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAE----IEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1322 FESYkvrvhnvlkqQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQdsqnnlqmnvSELQTLQSEHDTLLERHNKMLQE 1401
Cdd:TIGR02168 903 LREL----------ESKRSELRRELEELREKLAQLELRLEGLEVRID----------NLQERLSEEYSLTLEEAEALENK 962
|
810
....*....|....*...
gi 380818270 1402 TVSKEAELREKLCSIQSE 1419
Cdd:TIGR02168 963 IEDDEEEARRRLKRLENK 980
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1071-1413 |
2.27e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 2.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1071 EDLLARIETlqsNAKLLEVQILEVQRAKAMVDKELEAEK----LQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQE 1146
Cdd:TIGR02168 192 EDILNELER---QLKSLERQAEKAERYKELKAELRELELallvLRLEELREELEELQEELKEAEEELEELTAELQELEEK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1147 LELVKKdaqqttlmnmEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQL 1226
Cdd:TIGR02168 269 LEELRL----------EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1227 LVKTKKELAdskQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKtSAEQHQRTLSAYRQRVTALQE 1306
Cdd:TIGR02168 339 LAELEEKLE---ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL-QIASLNNEIERLEARLERLED 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1307 ESRAAKAEQATVTSEFESykvrvHNVLKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQMNVSELQTLQS 1386
Cdd:TIGR02168 415 RRERLQQEIEELLKKLEE-----AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
330 340
....*....|....*....|....*....
gi 380818270 1387 EHDTL--LERHNKMLQETVSKEAELREKL 1413
Cdd:TIGR02168 490 RLDSLerLQENLEGFSEGVKALLKNQSGL 518
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
586-1272 |
2.95e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 2.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 586 EAKINSLTEEKDDFINKLKTSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQK 665
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 666 LEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKNDviLKEHITELEKKLQLMVEERDNLNKLL 745
Cdd:TIGR02168 304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES--LEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 746 EN---EQVQKLFVKTQLYGFLKDMGSEVSEDGEEKDvvNILQAVSESLAKINE-EKCNLVFQCDKKVFELEKEIKCLqEE 821
Cdd:TIGR02168 382 ETlrsKVAQLELQIASLNNEIERLEARLERLEDRRE--RLQQEIEELLKKLEEaELKELQAELEELEEELEELQEEL-ER 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 822 SVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANE--KTRLENQNL----------LIQVEEVSQTC 889
Cdd:TIGR02168 459 LEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEgvKALLKNQSGlsgilgvlseLISVDEGYEAA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 890 ---------------NKNEI--------HNEKEKC------SIKEHENLKPLLEQKESELRDTRAELILLKDSLAKSPSV 940
Cdd:TIGR02168 539 ieaalggrlqavvveNLNAAkkaiaflkQNELGRVtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 941 QN--------------------------------DLL--------------SSVKELEEKLENLEKEGKEKEEKINKikl 974
Cdd:TIGR02168 619 SYllggvlvvddldnalelakklrpgyrivtldgDLVrpggvitggsaktnSSILERRREIEELEEKIEELEEKIAE--- 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 975 vavkAKKELDSSRKETQTVREELESLRSEKDQLSasmRDLIQAAESYKNLLLEYEKQSEQLDVEKERANNFEHHVEDLTR 1054
Cdd:TIGR02168 696 ----LEKALAELRKELEELEEELEQLRKELEELS---RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1055 QLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKamvdKELEAEKLQKEQKIKEHATTVNELEELQVQLQ 1134
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL----TLLNEEAANLRERLESLERRIAATERRLEDLE 844
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1135 KEKKQLQKTMQELELVKKDAQ--------QTTLMNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKiqkqkqeTLQEEI 1206
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEelieelesELEALLNERASLEEALALLRSELEELSEELRELESKRS-------ELRREL 917
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 380818270 1207 TSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLI-LQASLKGELEASQQQVEVYKIQLAEI 1272
Cdd:TIGR02168 918 EELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEaLENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
981-1236 |
4.23e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 4.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 981 KELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERAnnfehhvedLTRQLRNST 1060
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLR---------VKEKIGELE 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1061 LQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQL 1140
Cdd:TIGR02169 301 AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1141 QKTMQELELVKKDAQQTTL----MNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQY 1216
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKReineLKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460
|
250 260
....*....|....*....|
gi 380818270 1217 EEKNTKIKQLLVKTKKELAD 1236
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYDR 480
|
|
| Grip |
smart00755 |
golgin-97, RanBP2alpha,Imh1p and p230/golgin-245; |
1616-1660 |
6.16e-10 |
|
golgin-97, RanBP2alpha,Imh1p and p230/golgin-245;
Pssm-ID: 197860 Cd Length: 46 Bit Score: 56.07 E-value: 6.16e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 380818270 1616 ANLEYLKNVLLQFIFLKPgSERERLLPVINTMLQLSPEEKGKLAA 1660
Cdd:smart00755 2 ANFEYLKNVLLQFLTLRE-SERETLLPVISTVLQLSPEEMQKLLE 45
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
112-709 |
3.38e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.00 E-value: 3.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 112 KMEDAHKELEQSHINYVKETENLKNELMAvRAKYSEDKANLQKELEEAMNKQLELSEQLKFQNNSEDNVKKLQEEIEKIR 191
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKR-TENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 192 PAFEEqilyLQKQLDATTDEKKEtvtqlqniIEANSQHYQKNINSLQEELLQLKaihqEEVKELmcqieASAKEHETEIN 271
Cdd:PRK03918 238 EEIEE----LEKELESLEGSKRK--------LEEKIRELEERIEELKKEIEELE----EKVKEL-----KELKEKAEEYI 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 272 KLNELKENLVKQCEASEKNIqEKYECELENLRKATSNANQDNqmcsllfqentfveqvvnEKVKHLEDTLKELESQHSIL 351
Cdd:PRK03918 297 KLSEFYEEYLDELREIEKRL-SRLEEEINGIEERIKELEEKE------------------ERLEELKKKLKELEKRLEEL 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 352 KDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINELLLAKEEQGCVIEKLKSELAGLNKQfcctVEQHNKEVQSLK- 430
Cdd:PRK03918 358 EERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKE----IKELKKAIEELKk 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 431 -------------EQHQKEISELNETFLSDSEKEKLTLMFEIQGLKEQCDNLQQE--KQEAILNYESLREIMEILQTELG 495
Cdd:PRK03918 434 akgkcpvcgreltEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVlkKESELIKLKELAEQLKELEEKLK 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 496 EsagkisqefesmkqqqaSDVHELQQKLRtaftEKDALLETVNHLQGENEKLLSQQELVPELENTIKNLEEKNGVYLLSL 575
Cdd:PRK03918 514 K-----------------YNLEELEKKAE----EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEEL 572
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 576 SQRDTMLKELEAKINSLTEEKDDFINKLKTSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEEt 655
Cdd:PRK03918 573 AELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE- 651
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 380818270 656 lKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLE 709
Cdd:PRK03918 652 -LEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
616-1219 |
1.34e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 1.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 616 KCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLmvqmkvlSEDKEVLSAEVKSLYEENN 695
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEEL-------RLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 696 KLSSEKKQLSRDLEVFLSQKNDviLKEHITELEKKLQLMVEERDNLNKLLENEQVQKLFVKTQLygflkdMGSEVSEDGE 775
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRE--LEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL------EEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 776 EKDVVNILQAVSESLAKINEEKcNLVFQCDKKVFELEKEIKCLQEesvvQCEELKSLLRDYEQEKVLLRKELEEIQSEKE 855
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELA-EELLEALRAAAELAAQLEELEE----AEEALLERLERLEEELEELEEALAELEEEEE 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 856 ALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCNKNEIHNEKEKCSIKEHENLKPLLEQKEsELRDTRAELILLKDSLA 935
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE-ADYEGFLEGVKAALLLA 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 936 KSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAVKAKKELDSSRKETQTVREELESLRSEKDQLSASMRDLI 1015
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1016 QAAESYKNLLLEYEKQSEQL--------DVEKERANNFEHHVEDLTRQLRNSTLQCEKINSDNEDLL-ARIETLQSNAKL 1086
Cdd:COG1196 598 GAAVDLVASDLREADARYYVlgdtllgrTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGgSRRELLAALLEA 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1087 LEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLMNMEIAD 1166
Cdd:COG1196 678 EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELP 757
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 380818270 1167 YERLMKELNQKLSNKNNKIEDLE----------QEIKIQKQ----KQETLQEEITSLQSSVQQYEEK 1219
Cdd:COG1196 758 EPPDLEELERELERLEREIEALGpvnllaieeyEELEERYDflseQREDLEEARETLEEAIEEIDRE 824
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
89-731 |
1.61e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 59.75 E-value: 1.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 89 EQQCLSLKKENIKMK---QEVEDSVTKMEDAHKELEQSHINYVKETENLKNELMAVRAkysedkanLQKELEEAMNKQLE 165
Cdd:pfam15921 102 EKQKFYLRQSVIDLQtklQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKC--------LKEDMLEDSNTQIE 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 166 lseQLKFQNNSEDNVkklQEEIEKIRPAFEE---QILYLQKQLDATTDEKKET-VTQLQNIIEANSQHYQKNINSLQEEL 241
Cdd:pfam15921 174 ---QLRKMMLSHEGV---LQEIRSILVDFEEasgKKIYEHDSMSTMHFRSLGSaISKILRELDTEISYLKGRIFPVEDQL 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 242 LQLKAIHQEEVKELMCQ----IEASAKEHETEINKLNELKENLVKQCEAseknIQEKYECELENLRKATSNanqdnQMCS 317
Cdd:pfam15921 248 EALKSESQNKIELLLQQhqdrIEQLISEHEVEITGLTEKASSARSQANS----IQSQLEIIQEQARNQNSM-----YMRQ 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 318 LLFQENTF--VEQVVNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINELLLAKE 395
Cdd:pfam15921 319 LSDLESTVsqLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKE 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 396 E----------QGCVIEKLKSELAGLN---KQFCCTVEQHNKEVQSLKEQHQKEISELNETFLSDSekeklTLMFEIQGL 462
Cdd:pfam15921 399 QnkrlwdrdtgNSITIDHLRRELDDRNmevQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVS-----SLTAQLEST 473
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 463 KEQCDNLQQEKQEAILNYESLREIMEILQTELGESAGKI---SQEFESMKQQQASDVHELQ----------------QKL 523
Cdd:pfam15921 474 KEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIeatNAEITKLRSRVDLKLQELQhlknegdhlrnvqtecEAL 553
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 524 RTAFTEKDALLETVNHLQGENEKLLSQ--------QELVPELENTIKNLEEKNGVYLLSLSQRDTMLKELEAKINSL--- 592
Cdd:pfam15921 554 KLQMAEKDKVIEILRQQIENMTQLVGQhgrtagamQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLele 633
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 593 ------------------TEEKDDFINKLKTSYEEMDNFHKKCEREERLILELGKKVEQTTQ--------YNSELEQKVN 646
Cdd:pfam15921 634 kvklvnagserlravkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNklkmqlksAQSELEQTRN 713
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 647 ELTG-------------GLEETLKEK----DQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLE 709
Cdd:pfam15921 714 TLKSmegsdghamkvamGMQKQITAKrgqiDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELE 793
|
730 740
....*....|....*....|..
gi 380818270 710 VFLSQKNDviLKEHITELEKKL 731
Cdd:pfam15921 794 VLRSQERR--LKEKVANMEVAL 813
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
619-1314 |
2.42e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 2.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 619 REERLILElgkKVEQTTQYNSELEQKVNELtgglEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLsaevkslyEENNKLS 698
Cdd:TIGR02169 153 VERRKIID---EIAGVAEFDRKKEKALEEL----EEVEENIERLDLIIDEKRQQLERLRREREKA--------ERYQALL 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 699 SEKkqlsRDLEVFLSQKNDVILKEHITELEKKLQLMVEERDNLNKLLEnEQVQKLFVKTQLygfLKDMGSEVSEDGEEKD 778
Cdd:TIGR02169 218 KEK----REYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEIS-ELEKRLEEIEQL---LEELNKKIKDLGEEEQ 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 779 VvnilqAVSESLAKINEEkcnlVFQCDKKVFELEKEIKCLQEESVVQCEELKSLLRDYEQekvlLRKELEEIQSEKEALQ 858
Cdd:TIGR02169 290 L-----RVKEKIGELEAE----IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEE----LEREIEEERKRRDKLT 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 859 SDLLEMKNANEKTRLENQNL----LIQVEEVSQTCNKNEIHNEKEKCSIKEHENLKPLLEQKESELRDTRAELILLKDSL 934
Cdd:TIGR02169 357 EEYAELKEELEDLRAELEEVdkefAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKI 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 935 AKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEK--INKIKLVAV-----KAKKELDSSRKETQTVREELESLRSEKDQL 1007
Cdd:TIGR02169 437 NELEEEKEDKALEIKKQEWKLEQLAADLSKYEQElyDLKEEYDRVekelsKLQRELAEAEAQARASEERVRGGRAVEEVL 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1008 SAS-------MRDLIQAAESYKNLL----------------------LEYEK---------------QSEQLDVEKERAN 1043
Cdd:TIGR02169 517 KASiqgvhgtVAQLGSVGERYATAIevaagnrlnnvvveddavakeaIELLKrrkagratflplnkmRDERRDLSILSED 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1044 ----------NFEHHVEDLTRQLRNSTLQCEKINSDNEDLL-ARIETL---------------------QSNAKLLEVQI 1091
Cdd:TIGR02169 597 gvigfavdlvEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGkYRMVTLegelfeksgamtggsraprggILFSRSEPAEL 676
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1092 LEVQRAKAMVDKELEAekLQKEQKIKEhattvNELEELQVQLQKEKKQLQKTMQELELVKKDAQQttlMNMEIADYERLM 1171
Cdd:TIGR02169 677 QRLRERLEGLKRELSS--LQSELRRIE-----NRLDELSQELSDASRKIGEIEKEIEQLEQEEEK---LKERLEELEEDL 746
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1172 KELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSL-----QSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLI 1246
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 380818270 1247 LQASLKGELEASQQQVEVYKIQLAEITSEKHKIH---EHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAE 1314
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNgkkEELEEELEELEAALRDLESRLGDLKKERDELEAQ 897
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
331-1478 |
2.60e-08 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 59.29 E-value: 2.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 331 NEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFK---------INEllLAKEEQGCVI 401
Cdd:TIGR01612 571 NEDSIHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEKIKNISDKNEYIKKAIDLKkiiennnayIDE--LAKISPYQVP 648
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 402 EKLKSE-------LAGLNKQFCCTVEQHNKEVQSLKEQHQKEISElNETFLS------DSEKEKLTLMfEIQGLKEQCDN 468
Cdd:TIGR01612 649 EHLKNKdkiystiKSELSKIYEDDIDALYNELSSIVKENAIDNTE-DKAKLDdlkskiDKEYDKIQNM-ETATVELHLSN 726
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 469 LQQEKQEAIlnyESLREIMEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNHLQgenekll 548
Cdd:TIGR01612 727 IENKKNELL---DIIVEIKKHIHGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYN------- 796
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 549 SQQELVPELENTIKNLEEKNGVYLLSLSQRDtmlKELEAKINSLTEEKDDFINKLKTSYEEMDNFHKKCEREERLILELG 628
Cdd:TIGR01612 797 DQINIDNIKDEDAKQNYDKSKEYIKTISIKE---DEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELT 873
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 629 KKV--EQTTQYNSELEQKVNELTGGLEET---LKEKDQNDQKLEKLMVQMKVLSEDKEvlsaEVKSLYEENNKLSSEKKQ 703
Cdd:TIGR01612 874 NKIkaEISDDKLNDYEKKFNDSKSLINEInksIEEEYQNINTLKKVDEYIKICENTKE----SIEKFHNKQNILKEILNK 949
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 704 ------LSRDLEVFLSQKNDVILKEHITELEK---KLQLMVEERDN------LNKLLENEQVQKLFVKTQLYGFLKDMGS 768
Cdd:TIGR01612 950 nidtikESNLIEKSYKDKFDNTLIDKINELDKafkDASLNDYEAKNnelikyFNDLKANLGKNKENMLYHQFDEKEKATN 1029
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 769 EVSEDGEE--KDVVNILQAVSESLAKINEEKCNLVfqcDKKVFELEKEIKCLQEESVVQCEELKSLLRDY------EQEK 840
Cdd:TIGR01612 1030 DIEQKIEDanKNIPNIEIAIHTSIYNIIDEIEKEI---GKNIELLNKEILEEAEINITNFNEIKEKLKHYnfddfgKEEN 1106
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 841 VLLRKELEEIQSEKEALQ-------SDLLEMKNANEKTRLENQNLLIQVEEVSQTCnkneIHNEKEKCSIKEHENLKPLL 913
Cdd:TIGR01612 1107 IKYADEINKIKDDIKNLDqkidhhiKALEEIKKKSENYIDEIKAQINDLEDVADKA----ISNDDPEEIEKKIENIVTKI 1182
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 914 EQKE------SELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKLvavkakKELDSSR 987
Cdd:TIGR01612 1183 DKKKniydeiKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYI------EDLDEIK 1256
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 988 KETQtvreELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERA------NNFEHHVEDLTRQLRNSTL 1061
Cdd:TIGR01612 1257 EKSP----EIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSlkiiedFSEESDINDIKKELQKNLL 1332
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1062 QCEKINSDNEDLLARIETLQSnakllevqILEVQRAKAMVDKELEAEKlqkeqKIKEHATTVNEleelqvQLQKEKKQLQ 1141
Cdd:TIGR01612 1333 DAQKHNSDINLYLNEIANIYN--------ILKLNKIKKIIDEVKEYTK-----EIEENNKNIKD------ELDKSEKLIK 1393
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1142 KTMQELELVK-KDAQQTTLMNMEIadyerlmKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKN 1220
Cdd:TIGR01612 1394 KIKDDINLEEcKSKIESTLDDKDI-------DECIKKIKELKNHILSEESNIDTYFKNADENNENVLLLFKNIEMADNKS 1466
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1221 tkikQLLVKTKKEladskQAETDHLILQASLKGELEASQQqvevYKIQlaeitSEKHkihehlKTSAEQHQRTLSAYRQR 1300
Cdd:TIGR01612 1467 ----QHILKIKKD-----NATNDHDFNINELKEHIDKSKG----CKDE-----ADKN------AKAIEKNKELFEQYKKD 1522
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1301 VTALQEESRAAKAEQATVTSEFESYKVRvhNVLKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQN----NLQM 1376
Cdd:TIGR01612 1523 VTELLNKYSALAIKNKFAKTKKDSEIII--KEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNkaaiDIQL 1600
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1377 NVSELQTLQSEHDTLLERHNKMLQETVSKEAELREklCSIQSENMMMKsehtQTVSQLTSQNEVLRnSFRDQVRHLqEEH 1456
Cdd:TIGR01612 1601 SLENFENKFLKISDIKKKINDCLKETESIEKKISS--FSIDSQDTELK----ENGDNLNSLQEFLE-SLKDQKKNI-EDK 1672
|
1210 1220
....*....|....*....|..
gi 380818270 1457 RKTVETLQQQLSRVEAQLFQLK 1478
Cdd:TIGR01612 1673 KKELDELDSEIEKIEIDVDQHK 1694
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
978-1218 |
3.04e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 3.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 978 KAKKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKqseqlDVEKERANNFEHHVEDLTRQLR 1057
Cdd:TIGR02169 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA-----RLSHSRIPEIQAELSKLEEEVS 808
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1058 NSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKE---QKIKEHATTVNELEELQVQLQ 1134
Cdd:TIGR02169 809 RIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEeleEELEELEAALRDLESRLGDLK 888
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1135 KEKKQLQKTMQELELVKKDAqqttlmNMEIADYERLMKELNQKLSNKNNKIEDLEQEI--------------KIQKQKQE 1200
Cdd:TIGR02169 889 KERDELEAQLRELERKIEEL------EAQIEKKRKRLSELKAKLEALEEELSEIEDPKgedeeipeeelsleDVQAELQR 962
|
250 260
....*....|....*....|..
gi 380818270 1201 tLQEEITSLQS----SVQQYEE 1218
Cdd:TIGR02169 963 -VEEEIRALEPvnmlAIQEYEE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
819-1363 |
4.19e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 4.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 819 QEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEvsqtcnKNEIHNEK 898
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEE------AQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 899 EKCSIKEHENLKPLLEQKEsELRDTRAELILLKDSLAKSpsvQNDLLSSVKELEEKLENLEKEGKEkeekinkiklvavk 978
Cdd:COG1196 294 LAELARLEQDIARLEERRR-ELEERLEELEEELAELEEE---LEELEEELEELEEELEEAEEELEE-------------- 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 979 AKKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERAnnfEHHVEDLTRQLRN 1058
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL---EEELEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1059 STLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKK 1138
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1139 QLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEE 1218
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1219 KNTKIKQ---LLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLS 1295
Cdd:COG1196 593 ARGAIGAavdLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA 672
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 380818270 1296 AYRQRVTALQEESRAAKAEQATVTSEFESYKVRVHNVLKQQKNKSMSQAETEGAKQEREHLEMLIDQL 1363
Cdd:COG1196 673 ALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEE 740
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1098-1469 |
2.64e-07 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 55.83 E-value: 2.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1098 KAMVDKELEAEKLQKEQKIKEHATTVNELEELQVqlqkekkqLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQK 1177
Cdd:PRK10929 16 GAYAATAPDEKQITQELEQAKAAKTPAQAEIVEA--------LQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1178 LSNKNNKIEDLEQEIKIQKQKQETLQeeITSlqssvqqyeekntkikQLLvktkkELADSKQAETDHLILQASLKGELea 1257
Cdd:PRK10929 88 LNNERDEPRSVPPNMSTDALEQEILQ--VSS----------------QLL-----EKSRQAQQEQDRAREISDSLSQL-- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1258 SQQQVEVYKiQLAEITSeKHKIHEHLKTSAEQHQRtlsayrqrvTALQEESRAAKAeqatVTSEFESYKVRVHNvlKQQk 1337
Cdd:PRK10929 143 PQQQTEARR-QLNEIER-RLQTLGTPNTPLAQAQL---------TALQAESAALKA----LVDELELAQLSANN--RQE- 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1338 nksMSQAETEGAKQEREHLEMLIDQLKIKLqdsqNNLQMNVSElQTLqsEHDTLLERHNKMLQETVSKEAELREKLCSI- 1416
Cdd:PRK10929 205 ---LARLRSELAKKRSQQLDAYLQALRNQL----NSQRQREAE-RAL--ESTELLAEQSGDLPKSIVAQFKINRELSQAl 274
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 380818270 1417 --QSENM-MMKSEHTQTVSQLTSQNEVLrNSFRDQVRHLQEEhrkTV--ETLQQQLSR 1469
Cdd:PRK10929 275 nqQAQRMdLIASQQRQAASQTLQVRQAL-NTLREQSQWLGVS---NAlgEALRAQVAR 328
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
974-1229 |
3.13e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 3.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 974 LVAVKAKKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERANnfeHHVEDLT 1053
Cdd:TIGR02169 667 LFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK---ERLEELE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1054 RQLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVD-KELEAEKLQKEQKIKEHATTVNELEELQVQ 1132
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLNR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1133 LQKEKKQLQKTMQELELVKKDAQ-QTTLMNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQS 1211
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKeQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
|
250 260
....*....|....*....|..
gi 380818270 1212 SVQQ----YEEKNTKIKQLLVK 1229
Cdd:TIGR02169 904 KIEEleaqIEKKRKRLSELKAK 925
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
624-1413 |
2.75e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.28 E-value: 2.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 624 ILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKL--SSEK 701
Cdd:pfam02463 137 FLVQGGKIEIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALeyYQLK 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 702 KQLSRDLEVFLSQKNDVILKEHITELEKKLQLMVEERDNLNKLLENEQVQKLFVKTQLYGFLKDMGSEVSEDGEEKDVVN 781
Cdd:pfam02463 217 EKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 782 ILQAVSESLAKINEEKCNLVFQCDKKVFELEKEIKCLQEESVVQCEELKSLLRDYEQEKV----LLRKELEEIQSEKEAL 857
Cdd:pfam02463 297 ELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEeeeeLEKLQEKLEQLEEELL 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 858 QSDLLEMKNANEKTRLENQNLLIQVEEVSQTCNKNEIHNEKEKCSIKEHENLKPLLEQKESELRDTRAELILLKDSLAKS 937
Cdd:pfam02463 377 AKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQ 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 938 PSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAVKAKKELDSSRKETQTVREELESLRSEK-DQLSASMRDLIQ 1016
Cdd:pfam02463 457 ELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRiISAHGRLGDLGV 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1017 AAESYKNL-LLEYEKQSEQLDVEKERANNFEHHVEDLTRQLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQ 1095
Cdd:pfam02463 537 AVENYKVAiSTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEAD 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1096 RAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELN 1175
Cdd:pfam02463 617 EDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILR 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1176 QKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGEL 1255
Cdd:pfam02463 697 RQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKEL 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1256 EASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTSEFESYKVRVHNVLKQ 1335
Cdd:pfam02463 777 AEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEEL 856
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 380818270 1336 QKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQMNVSELQTLQSEHDTLLERHNKMLQETVSKEAELREKL 1413
Cdd:pfam02463 857 ERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYE 934
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
919-1413 |
2.81e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 2.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 919 ELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAVKAKKELDSSRKETQTVREELE 998
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 999 SLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERAnnfEHHVEDLTRQLRNSTLQCEKINSDNEDLLARIE 1078
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA---EAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1079 TLQSNAKLLEVQILEVQRAKAmvdkELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELvkkdaqqtt 1158
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEE----ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE--------- 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1159 lmnmEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTK------K 1232
Cdd:COG1196 457 ----EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAvavligV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1233 ELADSKQAETDHLILQASLKGELEASQQQVEVY---------------KIQLAEITSEKHKIHEHLK----TSAEQHQRT 1293
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYlkaakagratflpldKIRARAALAAALARGAIGAavdlVASDLREAD 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1294 LSAYRQRVTALQEESRAAKAEQATVTSEFESYKVRVhnVLKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNN 1373
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE--VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 380818270 1374 LQMNVSELQTLQSEHDTLLERHNKMLQETVSKEAELREKL 1413
Cdd:COG1196 691 EELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
811-1455 |
2.82e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.28 E-value: 2.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 811 LEKEIKCLQEESVVQCEELKSLLRDYE--QEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTR--------LENQNLLI 880
Cdd:TIGR00618 224 LEKELKHLREALQQTQQSHAYLTQKREaqEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINrarkaaplAAHIKAVT 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 881 QVEEVSQTCNKNEIHNEKEKCSIKEHENLKPLLEQKESELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEK 960
Cdd:TIGR00618 304 QIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHT 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 961 EGKEKEEKINKIKLvavkAKKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKE 1040
Cdd:TIGR00618 384 LQQQKTTLTQKLQS----LCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKI 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1041 RANNFEHHVEDLTRQLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDkELEAEKLQKEQKIKEHA 1120
Cdd:TIGR00618 460 HLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDID-NPGPLTRRMQRGEQTYA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1121 TTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLMN---MEIADYERLMKELNQKLSNKNNKIED----LEQEIK 1193
Cdd:TIGR00618 539 QLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDnrsKEDIPNLQNITVRLQDLTEKLSEAEDmlacEQHALL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1194 IQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKE-----LADSKQAETDHLILQASLKGELEASQQQVEVYKIQ 1268
Cdd:TIGR00618 619 RKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQErvrehALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEM 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1269 LAEITSEKHKIHEHLKTSAEQhqrtlsayrqrvtaLQEESRAAKAEQATVTSEFESYKVRVHNVLKQQKNKSMSQAETEG 1348
Cdd:TIGR00618 699 LAQCQTLLRELETHIEEYDRE--------------FNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHF 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1349 AKQEREHLEMLID----QLKIKLQDSQNNLQMNVSELQTLQSEHDTLLERHNKMLQETVSKEAELREKLCSIQSENMMMK 1424
Cdd:TIGR00618 765 NNNEEVTAALQTGaelsHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATL 844
|
650 660 670
....*....|....*....|....*....|.
gi 380818270 1425 SEHTQTVSQLTSQNEVLRNSFRDQVRHLQEE 1455
Cdd:TIGR00618 845 GEITHQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1064-1329 |
3.52e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.94 E-value: 3.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1064 EKINSDNEDLLARIETLQSNAKLLEV---QILEV-------QRAKAMVDKELEAekLQKEQKIKEHATTVNELEELQVQL 1133
Cdd:COG3206 107 EDPLGEEASREAAIERLRKNLTVEPVkgsNVIEIsytspdpELAAAVANALAEA--YLEQNLELRREEARKALEFLEEQL 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1134 QKEKKQLQKTMQELELVKKD------AQQTTLMNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEiT 1207
Cdd:COG3206 185 PELRKELEEAEAALEEFRQKnglvdlSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQS-P 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1208 SLQSSVQQYEEKNTKIKQLL----------VKTKKELADSKQAetdhliLQASLKGELEASQQQVEVYKIQLAEITSEKH 1277
Cdd:COG3206 264 VIQQLRAQLAELEAELAELSarytpnhpdvIALRAQIAALRAQ------LQQEAQRILASLEAELEALQAREASLQAQLA 337
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 380818270 1278 KIHEHLKTSAEQhQRTLSAYRQRVTALQE--ESRAAKAEQATVTSEFESYKVRV 1329
Cdd:COG3206 338 QLEARLAELPEL-EAELRRLEREVEVARElyESLLQRLEEARLAEALTVGNVRV 390
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
891-1441 |
4.50e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.56 E-value: 4.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 891 KNEIHNEKEKCSIKEHE--NLKPLLEQKESELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEK 968
Cdd:TIGR04523 109 NSEIKNDKEQKNKLEVElnKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKN 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 969 INKIKLVAVKAKKELDSSRKETQTVRE---ELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERANNf 1045
Cdd:TIGR04523 189 IDKIKNKLLKLELLLSNLKKKIQKNKSlesQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKK- 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1046 ehhvedltrQLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQilevqrAKAMVDKELEAEKLQKEQKIKEHATTVNE 1125
Cdd:TIGR04523 268 ---------QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ------KEQDWNKELKSELKNQEKKLEEIQNQISQ 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1126 LEELQVQLQKEKKQLQKTMQELELVKKDAQ-QTTLMNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQE 1204
Cdd:TIGR04523 333 NNKIISQLNEQISQLKKELTNSESENSEKQrELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDE 412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1205 EITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEItsekhkihehlK 1284
Cdd:TIGR04523 413 QIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI-----------K 481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1285 TSAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTSEFESYKVRVhnvlkQQKNKSMSQAETEGAKQEREHLEMLIDQLK 1364
Cdd:TIGR04523 482 QNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKI-----EKLESEKKEKESKISDLEDELNKDDFELKK 556
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 380818270 1365 IKLQDSQNNLQMNVSELQtlqsEHDTLLERHNKMLQETVSKEAELREKLCSIQSENMMMKSEHTQTVSQLTSQNEVL 1441
Cdd:TIGR04523 557 ENLEKEIDEKNKEIEELK----QTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKL 629
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1175-1408 |
7.95e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 7.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1175 NQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAetdhlilQASLKGE 1254
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE-------LAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1255 LEASQQQVEVYKIQLAE--ITSEKHKIHEHLK-----TSAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTsefesykv 1327
Cdd:COG4942 92 IAELRAELEAQKEELAEllRALYRLGRQPPLAlllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA-------- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1328 RVHNVLKQQKNKsmSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQMNVSELQTLQSEHDTLLERHNKMLQETVSKEA 1407
Cdd:COG4942 164 ALRAELEAERAE--LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
.
gi 380818270 1408 E 1408
Cdd:COG4942 242 R 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1067-1289 |
8.30e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 8.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1067 NSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQE 1146
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1147 LELVKKDAQQTTLMNMEIADYERLMKELNQKLSNKNNKIEDLEQEI-KIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQ 1225
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLaPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 380818270 1226 LLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQ 1289
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
848-1262 |
9.63e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 50.68 E-value: 9.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 848 EEIQSEKEALQSD-LLEMKNANEKTRLEN-QNLLIQVEEVSQtcnkneihnekekcsikEHENLKPLLEQKESELRDTRA 925
Cdd:PRK11281 39 ADVQAQLDALNKQkLLEAEDKLVQQDLEQtLALLDKIDRQKE-----------------ETEQLKQQLAQAPAKLRQAQA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 926 ELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAV------KAKKELDSSRKETQTVREELES 999
Cdd:PRK11281 102 ELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSlqtqpeRAQAALYANSQRLQQIRNLLKG 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1000 LRSEKDQLSASMRDLIQAAESYKNLLLEYEKQS------------EQLDVEKERANNFEHHVEDL-----TRQLRNSTLQ 1062
Cdd:PRK11281 182 GKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSlegntqlqdllqKQRDYLTARIQRLEHQLQLLqeainSKRLTLSEKT 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1063 CEKinSDNEDLLARIET-------LQSNAKLLEVQILEVQRAKAMVDKELEAEK-----LQKEQKIKEhattvnELEELQ 1130
Cdd:PRK11281 262 VQE--AQSQDEAARIQAnplvaqeLEINLQLSQRLLKATEKLNTLTQQNLRVKNwldrlTQSERNIKE------QISVLK 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1131 VQLQKEKKqLQKTMQELelvkKDAQQTTLMNMEIADYeRLMK-ELNQ---KLSNKNNKIEDLEqeikiQKQKQETLQEEI 1206
Cdd:PRK11281 334 GSLLLSRI-LYQQQQAL----PSADLIEGLADRIADL-RLEQfEINQqrdALFQPDAYIDKLE-----AGHKSEVTDEVR 402
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 380818270 1207 TSLQSsvqqyeekntkikqlLVKTKKELAD--SKQaetdhLILQASLKGELEASQQQV 1262
Cdd:PRK11281 403 DALLQ---------------LLDERRELLDqlNKQ-----LNNQLNLAINLQLNQQQL 440
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1138-1367 |
1.50e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1138 KQLQKTMQELELVKKdaqqttlmnmEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYE 1217
Cdd:COG4942 20 DAAAEAEAELEQLQQ----------EIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1218 EKNTKIKQLLVKTKKELAD------------------SKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKhki 1279
Cdd:COG4942 90 KEIAELRAELEAQKEELAEllralyrlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR--- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1280 hEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTSEFESYKVRVHNVLKQQKN--KSMSQAETEGAKQEREHLE 1357
Cdd:COG4942 167 -AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEEleALIARLEAEAAAAAERTPA 245
|
250
....*....|
gi 380818270 1358 MLIDQLKIKL 1367
Cdd:COG4942 246 AGFAALKGKL 255
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
654-891 |
1.71e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.54 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 654 ETLKEKDQNDQ---KLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQkndvILKEhITELEKK 730
Cdd:PRK05771 34 EDLKEELSNERlrkLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEK----IEKE-IKELEEE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 731 LQLMVEERDNLNKLLE--------NEQVQKLFVKTQLYGFLkdmgSEVSEDGEEKDVVNILQAVSEsLAKINEEKCNLVF 802
Cdd:PRK05771 109 ISELENEIKELEQEIErlepwgnfDLDLSLLLGFKYVSVFV----GTVPEDKLEELKLESDVENVE-YISTDKGYVYVVV 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 803 QCDKKVF-ELEKEIKCL--QEESVVQCEELKSLLRDYEQEkvllrkeLEEIQSEKEALQSDLLEMKNANEKTRLENQNLL 879
Cdd:PRK05771 184 VVLKELSdEVEEELKKLgfERLELEEEGTPSELIREIKEE-------LEEIEKERESLLEELKELAKKYLEELLALYEYL 256
|
250
....*....|..
gi 380818270 880 IQVEEVSQTCNK 891
Cdd:PRK05771 257 EIELERAEALSK 268
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1005-1236 |
1.74e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1005 DQLSASMRDLiqaaESYKNLLLEYEKQSEQLDVEKERANNFEHHVEDLT--RQLRnSTLQCEKINSDNEDLLARIETLQS 1082
Cdd:COG4913 228 DALVEHFDDL----ERAHEALEDAREQIELLEPIRELAERYAAARERLAelEYLR-AALRLWFAQRRLELLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1083 NAKLLEVQILEVQRAKamvdKELEAEKLQKEQKIKEHATtvNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTL-MN 1161
Cdd:COG4913 303 ELARLEAELERLEARL----DALREELDELEAQIRGNGG--DRLEQLEREIERLERELEERERRRARLEALLAALGLpLP 376
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 380818270 1162 MEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELAD 1236
Cdd:COG4913 377 ASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAE 451
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
331-772 |
1.83e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.63 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 331 NEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKdEFFHEREDLEFKINELLLAKEEQGCVIEKLKSELAG 410
Cdd:TIGR04523 165 KKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLK-KKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 411 LNKQFCCTVEQHNK---EVQSLKEQHQKEISELNETFLSDSEKEKltlmfEIQGLKEQCDNLQQEKQEAILNY-----ES 482
Cdd:TIGR04523 244 KTTEISNTQTQLNQlkdEQNKIKKQLSEKQKELEQNNKKIKELEK-----QLNQLKSEISDLNNQKEQDWNKElkselKN 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 483 LREIMEILQTELGESAGKISQefesMKQQQASDVHELQQKLRTAFTEKDALLETVNHLQGENEKLLSQQELVPELENTIK 562
Cdd:TIGR04523 319 QEKKLEEIQNQISQNNKIISQ----LNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIN 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 563 NLEEKNGVYLLSLSQRDTMLKELEAKINSLTEEKDDFINKLKTSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELE 642
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLS 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 643 QKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSR---DLEVFLSQKNDVI 719
Cdd:TIGR04523 475 RSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESkisDLEDELNKDDFEL 554
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 380818270 720 LKEHITELEKKLQLMVEERDNLNKLLENEQVQKLFVKTQLYGFLKDMGSEVSE 772
Cdd:TIGR04523 555 KKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEE 607
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
913-1158 |
2.18e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 2.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 913 LEQKESELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKekeekinkiklvavKAKKELDSSRKETQT 992
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR--------------ALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 993 VREELESLRSEKDQLSASMRDLIQAAesYKNLLLEYEKqseqLDVEKERANNFEHHVEDLTRQLRNSTLQCEKINSDNED 1072
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRAL--YRLGRQPPLA----LLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1073 LLARIETLQSNAKLLEVQILEVQRAKamvdKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKK 1152
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEER----AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
....*.
gi 380818270 1153 DAQQTT 1158
Cdd:COG4942 238 AAAERT 243
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
71-354 |
2.21e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 71 IKALTERLDAILLEKAETEQQCLSLKKEnikmKQEVEDSVTKMEDAHKELEQShinyVKETENLKNELMAVRAKYSEDKA 150
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAE----LAELEAELEELRLELEELELE----LEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 151 NLQKELEEAMNKQLELSEQLKFQNNSEDNVKKLQEEIEKIRPAFEEQILYLQKQLDATTDEKKETVTQLQNIIEANSQHY 230
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 231 QKNINSLQEELLQLKAIHQEEVKELmcQIEASAKEHETEINKLNELKENLVKQCEASEKNIQEKYECELENLRKATSNAN 310
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEE--ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 380818270 311 QDnqmcsllfQENTFVEQVVNEKVKHLEDTLKELESQHSILKDE 354
Cdd:COG1196 464 LL--------AELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
982-1215 |
2.53e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 2.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 982 ELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERANNFEHHVEDLTRQLrnstl 1061
Cdd:COG4913 655 EYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEEL----- 729
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1062 qcekinsdnEDLLARIETLQSNAKLLEVQILEVQRAKAMVDkeleaeklQKEQKIKEHATtvNELEELQVQLQKEKKQLQ 1141
Cdd:COG4913 730 ---------DELQDRLEAAEDLARLELRALLEERFAAALGD--------AVERELRENLE--ERIDALRARLNRAEEELE 790
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 380818270 1142 KTMQE-LELVKKDAQQTTLMNMEIADYERLMKELnqklsnKNNKIEDLEQEIKIQKQKQETlqEEITSLQSSVQQ 1215
Cdd:COG4913 791 RAMRAfNREWPAETADLDADLESLPEYLALLDRL------EEDGLPEYEERFKELLNENSI--EFVADLLSKLRR 857
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
600-1173 |
2.56e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.29 E-value: 2.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 600 INKLKTSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKdqndQKLEKLMVQMKVLSED 679
Cdd:PRK03918 171 IKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV----KELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 680 KEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKNDVilkEHITELEKKLQLMVEERDNLNKLLENEQVQKLFVKTQL 759
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL---KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEI 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 760 YGFLKDMgsevsEDGEEKdvvnilqavSESLAKINEEKCNLvfqcDKKVFELEKEIKCLQE--ESVVQCEELKSLLRDYE 837
Cdd:PRK03918 324 NGIEERI-----KELEEK---------EERLEELKKKLKEL----EKRLEELEERHELYEEakAKKEELERLKKRLTGLT 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 838 QEKvlLRKELEEIQSEKEALQ---SDLLEMKNANEKTRLENQNLLIQVEEVSQTCN--KNEIHNEKEKCSIKEH----EN 908
Cdd:PRK03918 386 PEK--LEKELEELEKAKEEIEeeiSKITARIGELKKEIKELKKAIEELKKAKGKCPvcGRELTEEHRKELLEEYtaelKR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 909 LKPLLEQKESELRDTRAELILLKDSLAKSPsvqnDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAVKAKKELDSSRK 988
Cdd:PRK03918 464 IEKELKEIEEKERKLRKELRELEKVLKKES----ELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKG 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 989 ETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQ--SEQLDVEKE------------RANNFEHHVEDLTR 1054
Cdd:PRK03918 540 EIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgfESVEELEERlkelepfyneylELKDAEKELEREEK 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1055 QLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDK-ELEAEKLQKEQKIKEHATTVNELEELQVQL 1133
Cdd:PRK03918 620 ELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYlELSRELAGLRAELEELEKRREEIKKTLEKL 699
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 380818270 1134 QKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKE 1173
Cdd:PRK03918 700 KEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKE 739
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
496-1420 |
2.70e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.27 E-value: 2.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 496 ESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNHLQGENEKLLSQQELVPELENTIKNLEEKngvyLLSL 575
Cdd:TIGR00606 189 ETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHN----LSKI 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 576 SQRDTMLKELEAKINSLTEEKDDFINKLKTSYE-------EMDNFHKKCERE-ERLILELGKKVEQTTQYNSELEQKVNE 647
Cdd:TIGR00606 265 MKLDNEIKALKSRKKQMEKDNSELELKMEKVFQgtdeqlnDLYHNHQRTVREkERELVDCQRELEKLNKERRLLNQEKTE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 648 LtggleetlkEKDQNDQKLEKLMVQMKVLSEDKEVLSaevkslyeenNKLSSEKKQLSRDLEVFLSQKNDVILKEHITEL 727
Cdd:TIGR00606 345 L---------LVEQGRLQLQADRHQEHIRARDSLIQS----------LATRLELDGFERGPFSERQIKNFHTLVIERQED 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 728 EKKL--QLMVEERDNLNklLENEQVQKLFVKTQLYGFLKDMGSEVSEDGEE--KDVVNILQAVSESLAKINEEkcnlvfq 803
Cdd:TIGR00606 406 EAKTaaQLCADLQSKER--LKQEQADEIRDEKKGLGRTIELKKEILEKKQEelKFVIKELQQLEGSSDRILEL------- 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 804 cDKKVFELEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKealqsdllemKNANEKTRLENQNLLIQVE 883
Cdd:TIGR00606 477 -DQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQ----------LNHHTTTRTQMEMLTKDKM 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 884 EVSQTCNKNEIHNEKEKCSIKEHENLKPLLE----QKESELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLE 959
Cdd:TIGR00606 546 DKDEQIRKIKSRHSDELTSLLGYFPNKKQLEdwlhSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYE 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 960 KEGKEKEEKINKIKlvavkakkELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLdveK 1039
Cdd:TIGR00606 626 DKLFDVCGSQDEES--------DLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAEL---Q 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1040 ERANNFEHHVEDLTRQLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEH 1119
Cdd:TIGR00606 695 EFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLL 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1120 ATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTlmNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQ 1199
Cdd:TIGR00606 775 GTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAA--KLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLI 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1200 ETLQEEITSLQSSV---------------------QQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEAS 1258
Cdd:TIGR00606 853 QDQQEQIQHLKSKTnelkseklqigtnlqrrqqfeEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK 932
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1259 QQQVEVYKIQLAEITSEKHKIHEHLKT-----------SAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTSEFESYKV 1327
Cdd:TIGR00606 933 ETSNKKAQDKVNDIKEKVKNIHGYMKDienkiqdgkddYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKI 1012
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1328 RvHNVLKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQMNvsELQTLQSEHDTLLERHNKMLQETVSKEA 1407
Cdd:TIGR00606 1013 Q-ERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEE--NIDLIKRNHVLALGRQKGYEKEIKHFKK 1089
|
970
....*....|...
gi 380818270 1408 ELREKLCSIQSEN 1420
Cdd:TIGR00606 1090 ELREPQFRDAEEK 1102
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
589-1231 |
3.12e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 3.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 589 INSLTEEKDDFINKLKTSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEK 668
Cdd:TIGR04523 28 ANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 669 LMVQMKVLSEDKEVLSAEVKSLYEENN-------KLSSEKKQLSRDLEVFLSQKNDviLKEHITELEKKLQLMVEERDNL 741
Cdd:TIGR04523 108 INSEIKNDKEQKNKLEVELNKLEKQKKenkknidKFLTEIKKKEKELEKLNNKYND--LKKQKEELENELNLLEKEKLNI 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 742 NKLLENEQVQKLfvktQLYGFLKDMGSEVSEDGEEKDVVNILQAVSESLAKINEEKCNLVFQCDKKVFELEKEIKCLQEE 821
Cdd:TIGR04523 186 QKNIDKIKNKLL----KLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDE 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 822 SVVQCEELKSLLRDYEQEKVL---LRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCNKNEIHNEK 898
Cdd:TIGR04523 262 QNKIKKQLSEKQKELEQNNKKikeLEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLN 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 899 EKCSikeheNLKPLLEQKESELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAVK 978
Cdd:TIGR04523 342 EQIS-----QLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKK 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 979 AKKELDSSRKETQTVREELESLRSEKDQLSASMRDLiqaAESYKNLLLEYEKQSEQLDVEKERANNFEHHVEDLTRQLRN 1058
Cdd:TIGR04523 417 LQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVK---ELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKS 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1059 STLQCEKINSDNEDLLARIETLQSNAKLLEVQIlevqrakamvdKELEAEKLQKEQKIKEHATTVNELEEL--QVQLQKE 1136
Cdd:TIGR04523 494 KEKELKKLNEEKKELEEKVKDLTKKISSLKEKI-----------EKLESEKKEKESKISDLEDELNKDDFElkKENLEKE 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1137 KKQLQKTMQELELVKKDAQQTTLMNMEIAD-YERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQ 1215
Cdd:TIGR04523 563 IDEKNKEIEELKQTQKSLKKKQEEKQELIDqKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNK 642
|
650
....*....|....*.
gi 380818270 1216 YEEKNTKIKQLLVKTK 1231
Cdd:TIGR04523 643 LKQEVKQIKETIKEIR 658
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
401-757 |
3.57e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 3.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 401 IEKLKSELAGLnKQFCCTVEQHNKEVQSLKEQHQKEISEL-NETFLSDSEKEKLT-----LMFEIQGLKEQCDNLQQEKQ 474
Cdd:TIGR02169 683 LEGLKRELSSL-QSELRRIENRLDELSQELSDASRKIGEIeKEIEQLEQEEEKLKerleeLEEDLSSLEQEIENVKSELK 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 475 EAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVN-HLQGENEKLLSQQEL 553
Cdd:TIGR02169 762 ELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTlEKEYLEKEIQELQEQ 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 554 VPELENTIKNLEEKNGVYLLSLSQRDTMLKELEAKINSLTEEKDDfinkLKTSYEEMDNFHKKCEREERlilELGKKVEQ 633
Cdd:TIGR02169 842 RIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD----LKKERDELEAQLRELERKIE---ELEAQIEK 914
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 634 TTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLsAEVKSLYEENNKLSSEKKQLSRDLEvfls 713
Cdd:TIGR02169 915 KRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVE-EEIRALEPVNMLAIQEYEEVLKRLD---- 989
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 380818270 714 qkndvilkehitELEKKLQLMVEERDNLNKLLE--NEQVQKLFVKT 757
Cdd:TIGR02169 990 ------------ELKEKRAKLEEERKAILERIEeyEKKKREVFMEA 1023
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
332-598 |
3.74e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.78 E-value: 3.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 332 EKVKHLEDTLKELESQHSILKDEvtymnnlklklemDAQHIKDEFFHEREDLEFKINELLLAKEEQGCVIEKLKSELAGL 411
Cdd:COG1196 213 ERYRELKEELKELEAELLLLKLR-------------ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 412 NKQfcctVEQHNKEVQSLK---EQHQKEISELNETfLSDSEKEKLTLMFEIQGLKEQCDNLQQEKQEAILNYESLREIME 488
Cdd:COG1196 280 ELE----LEEAQAEEYELLaelARLEQDIARLEER-RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 489 ILQTELGESAGKISQEFESMKQQQA---SDVHELQQKLRTAFTEKDALLETVNHLQGENEKLLSQQELVPELENTIKNLE 565
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEeleELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
250 260 270
....*....|....*....|....*....|...
gi 380818270 566 EKNGVYLLSLSQRDTMLKELEAKINSLTEEKDD 598
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1088-1387 |
4.34e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 4.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1088 EVQILEVQRAKAMVDKELEAEKLQKEQKI---------KEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTT 1158
Cdd:TIGR02169 199 QLERLRREREKAERYQALLKEKREYEGYEllkekealeRQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELN 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1159 LMNMEIADYERL-----MKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKE 1233
Cdd:TIGR02169 279 KKIKDLGEEEQLrvkekIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1234 LADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEkhkiHEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKA 1313
Cdd:TIGR02169 359 YAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE----INELKRELDRLQEELQRLSEELADLNAAIAGIEA 434
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 380818270 1314 EQATVTSEFESYKVRVHnvlKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQMNVSELQTLQSE 1387
Cdd:TIGR02169 435 KINELEEEKEDKALEIK---KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
449-709 |
7.81e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 7.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 449 EKEKLTLMFEIQGLKEQCDNLQQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQQQAsDVHELQQKLRTAFT 528
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA-EEYELLAELARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 529 EKDALLETVNHLQGENEKLLSQQElvpELENTIKNLEEKngvyllslsqrdtmLKELEAKINSLTEEKDDFINKLKTSYE 608
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELA---ELEEELEELEEE--------------LEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 609 EMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVK 688
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260
....*....|....*....|.
gi 380818270 689 SLYEENNKLSSEKKQLSRDLE 709
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLA 466
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
981-1411 |
7.92e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 7.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 981 KELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERANnFEHHVEDLTRQLrnst 1060
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA-LEAELAELPERL---- 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1061 lqcekinsdnEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQL 1140
Cdd:COG4717 149 ----------EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1141 QktmQELELVKKDAQQTTLMNMEIADYERLMKELNQKLSnkNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKN 1220
Cdd:COG4717 219 Q---EELEELEEELEQLENELEAAALEERLKEARLLLLI--AAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1221 TKIKQLLVKTKKELADS------KQAETDHLILQASLKGELEASQQQVEVYKI-QLAEITSEKHKIHEHLKTsaEQHQRT 1293
Cdd:COG4717 294 AREKASLGKEAEELQALpaleelEEEELEELLAALGLPPDLSPEELLELLDRIeELQELLREAEELEEELQL--EELEQE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1294 LSAYRQRVTALQEESRAAKAEQAtvtSEFESYKVRVhNVLKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNN 1373
Cdd:COG4717 372 IAALLAEAGVEDEEELRAALEQA---EEYQELKEEL-EELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEE 447
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 380818270 1374 LQMNVSELQTLQSEHDTLLERHN--KMLQETVSKEAELRE 1411
Cdd:COG4717 448 LEELREELAELEAELEQLEEDGElaELLQELEELKAELRE 487
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1071-1315 |
8.03e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.60 E-value: 8.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1071 EDLLARIETLQSNaKLLEVQilevqraKAMVDKELEA--EKLQKEQKIKEhattvnELEELQVQLQKEKKQLQKTMQELE 1148
Cdd:PRK11281 39 ADVQAQLDALNKQ-KLLEAE-------DKLVQQDLEQtlALLDKIDRQKE------ETEQLKQQLAQAPAKLRQAQAELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1149 LVKKDAQQTTLMNMEIADYERLMKELNQKLSNKNNKIEDL----EQEIKIQKQKqETLQEEITSLQSSVQQyeekntkIK 1224
Cdd:PRK11281 105 ALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLaeynSQLVSLQTQP-ERAQAALYANSQRLQQ-------IR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1225 QLLVKTK---KELADSKQ----AETDHLILQASL-KGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQ-HQRTLS 1295
Cdd:PRK11281 177 NLLKGGKvggKALRPSQRvllqAEQALLNAQNDLqRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAiNSKRLT 256
|
250 260
....*....|....*....|
gi 380818270 1296 AYRQRVTALQEESRAAKAEQ 1315
Cdd:PRK11281 257 LSEKTVQEAQSQDEAARIQA 276
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
688-1461 |
1.00e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 688 KSLYEENNKLSSEKKQLSRDLEvfLSQKNDVILKEHITELEKKLQLMVEERDNLNKLLENEqvqklfvktqlygflkdmg 767
Cdd:pfam15921 78 RVLEEYSHQVKDLQRRLNESNE--LHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRE------------------- 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 768 sevseDGEEKDVVNILQAVSESLAKINEEKCNLVFQCDKKVFELEKEIkcLQEESVVQceELKSLLRDYEQEK------- 840
Cdd:pfam15921 137 -----SQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMM--LSHEGVLQ--EIRSILVDFEEASgkkiyeh 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 841 ------------VLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNlliQVEEVSQTcnkneiHNEKEKCSIKEHEN 908
Cdd:pfam15921 208 dsmstmhfrslgSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQN---KIELLLQQ------HQDRIEQLISEHEV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 909 LKPLLEQKESELRdtraelillkdSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAVKAKKELDSSRK 988
Cdd:pfam15921 279 EITGLTEKASSAR-----------SQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEEL 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 989 ETQTV--REELESLRSEKDQLSASMRDLiqaAESYKNLLLEYEKQSEQLDVEKERANNFEHH-------VEDLTRQLRNS 1059
Cdd:pfam15921 348 EKQLVlaNSELTEARTERDQFSQESGNL---DDQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitIDHLRRELDDR 424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1060 TLQCEKINS-----------DNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDK---ELEAEKLQKEQKIKEHATTVNE 1125
Cdd:pfam15921 425 NMEVQRLEAllkamksecqgQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKvveELTAKKMTLESSERTVSDLTAS 504
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1126 LEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEE 1205
Cdd:pfam15921 505 LQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRT 584
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1206 ITSLQSSVQQYEeKNTKIKQLLVKTKKELADSKQAETDhlilqaslkgELEASQQQVEVYKIQLAEITSEKHKIHEHLKT 1285
Cdd:pfam15921 585 AGAMQVEKAQLE-KEINDRRLELQEFKILKDKKDAKIR----------ELEARVSDLELEKVKLVNAGSERLRAVKDIKQ 653
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1286 SAEQhqrtlsayrqrvtaLQEESRAAKAEQATVTSEFESYKvrvhnvlKQQKNKSmsqaetegakqerEHLEMLIDQLKI 1365
Cdd:pfam15921 654 ERDQ--------------LLNEVKTSRNELNSLSEDYEVLK-------RNFRNKS-------------EEMETTTNKLKM 699
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1366 KLQDSQNNLQMNVSELQTLQSEHDTLLERHNKMLQETVSKEAE----------LREKLCSIQSENMMMKSEHTQtVSQLT 1435
Cdd:pfam15921 700 QLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQidalqskiqfLEEAMTNANKEKHFLKEEKNK-LSQEL 778
|
810 820
....*....|....*....|....*.
gi 380818270 1436 SQNEVLRNSFRDQVRHLQEEHRKTVE 1461
Cdd:pfam15921 779 STVATEKNKMAGELEVLRSQERRLKE 804
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
448-737 |
1.03e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 448 SEKEKLTLMFE-IQGLKEQCDNLQQEKQEAILNYESLREIMEILQTELGEsagkISQEFESMKQQQASDVHELQQKLRTA 526
Cdd:TIGR02169 671 SEPAELQRLRErLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE----IEKEIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 527 FTEKDALLETVNHLQGENEKLLSQQELVPELENTIKNLEEkngvyllslSQRDTMLKELEAKINSLTEEKDDFINKLKTS 606
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA---------RLSHSRIPEIQAELSKLEEEVSRIEARLREI 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 607 YEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAE 686
Cdd:TIGR02169 818 EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ 897
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 380818270 687 VKSLYEENNKLSSEKKQLSRDLEVFLSQKNdvILKEHITELEKKLQLMVEE 737
Cdd:TIGR02169 898 LRELERKIEELEAQIEKKRKRLSELKAKLE--ALEEELSEIEDPKGEDEEI 946
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1076-1275 |
1.27e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1076 RIETLQSNAKLLEvQILEV-QRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDA 1154
Cdd:COG4913 243 ALEDAREQIELLE-PIRELaERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1155 QQttlmnmEIADYERlmkelnQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKEL 1234
Cdd:COG4913 322 RE------ELDELEA------QIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA 389
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 380818270 1235 ADSKQAETDHLILQASLKGELEASQQQVevyKIQLAEITSE 1275
Cdd:COG4913 390 AALLEALEEELEALEEALAEAEAALRDL---RRELRELEAE 427
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1103-1480 |
1.45e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1103 KELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQqttlmnmeIADYERLMKELNQKLSNKN 1182
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ--------LLPLYQELEALEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1183 NKIEDLEQEIkiqkQKQETLQEEITSLQSSVQQYEEK-NTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQ 1261
Cdd:COG4717 146 ERLEELEERL----EELRELEEELEELEAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1262 VEVYKIQLAEITSEKHKIHEHLKTSAEQHQR-------TLSAYRQRVTALQEESRAAKAEQATVTSEFESYKVRVHNVLK 1334
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLliaaallALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1335 QQKNKSMSQAETEGAKQERehLEMLIDQLKIKLQDSQNNLQMNVSELQTLQSEHDTLLERHNKMLQET------------ 1402
Cdd:COG4717 302 KEAEELQALPALEELEEEE--LEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEEleqeiaallaea 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1403 -VSKEAELREKLcSIQSENMMMKSEHTQTVSQLTSQNEVLRNSFRD-----------QVRHLQEEHRKTVETLQQQLSRV 1470
Cdd:COG4717 380 gVEDEEELRAAL-EQAEEYQELKEELEELEEQLEELLGELEELLEAldeeeleeeleELEEELEELEEELEELREELAEL 458
|
410
....*....|
gi 380818270 1471 EAQLFQLKNE 1480
Cdd:COG4717 459 EAELEQLEED 468
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
430-1154 |
1.51e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 430 KEQHQKEISELnETFLSDSEKEKLTLMFEIQGLKEQCDNLQQEKQEAILNYESL-REIMEILQTELGESAGKISQeFESM 508
Cdd:TIGR02169 232 KEALERQKEAI-ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIAS-LERS 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 509 KQQQASDVHELQQKLRTAFTEKDALLETVNHLQGENEkllSQQELVPELENTIKNLEEKNGVYLLSLSQRDTMLKELEAK 588
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE---EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 589 INSLTEEKDDFINKLKTSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEK 668
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 669 LMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQL------SRDLEVFLSQKNDVIL----------KEHITELE---- 728
Cdd:TIGR02169 467 YEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASeervrgGRAVEEVLKASIQGVHgtvaqlgsvgERYATAIEvaag 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 729 KKLQLMVEERDN---------------------LNKLLENEQVQKLFVKTQLYGFLKD---------------------- 765
Cdd:TIGR02169 547 NRLNNVVVEDDAvakeaiellkrrkagratflpLNKMRDERRDLSILSEDGVIGFAVDlvefdpkyepafkyvfgdtlvv 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 766 ---------MGSE--VSEDGE--EKDVVNILQAVSESLAKIN--EEKCNLVfQCDKKVFELEKEIKCLQEESvvqcEELK 830
Cdd:TIGR02169 627 edieaarrlMGKYrmVTLEGElfEKSGAMTGGSRAPRGGILFsrSEPAELQ-RLRERLEGLKRELSSLQSEL----RRIE 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 831 SLLRDYEQEKVLLRKELEEIQSEKEALQSDLlemknANEKTRLENQNLLIQVEEVSQTCNKNEI-HNEKEKCSIKEH-EN 908
Cdd:TIGR02169 702 NRLDELSQELSDASRKIGEIEKEIEQLEQEE-----EKLKERLEELEEDLSSLEQEIENVKSELkELEARIEELEEDlHK 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 909 LKPLLEQKESELRDTR-----AELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAVKAKKEL 983
Cdd:TIGR02169 777 LEEALNDLEARLSHSRipeiqAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 984 DSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERAnnfEHHVEDLTRQLRNSTLQc 1063
Cdd:TIGR02169 857 ENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK---RKRLSELKAKLEALEEE- 932
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1064 ekiNSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKeLEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKT 1143
Cdd:TIGR02169 933 ---LSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA-LEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILER 1008
|
810
....*....|.
gi 380818270 1144 MQELELVKKDA 1154
Cdd:TIGR02169 1009 IEEYEKKKREV 1019
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1163-1352 |
1.55e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.98 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1163 EIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQssvQQYEEKNTKIKQLLVKTKKELADSKQAEt 1242
Cdd:COG3883 31 ELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE---AEIEERREELGERARALYRSGGSVSYLD- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1243 dhLILQAS----LKGELEASQQQVEVYKIQLAEITSEKHKIhEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATV 1318
Cdd:COG3883 107 --VLLGSEsfsdFLDRLSALSKIADADADLLEELKADKAEL-EAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEAL 183
|
170 180 190
....*....|....*....|....*....|....
gi 380818270 1319 TSEFESYKVRVHNVLKQQKNKSMSQAETEGAKQE 1352
Cdd:COG3883 184 LAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1103-1300 |
1.70e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1103 KELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKtMQELELVKKDAQQTTlmnmeiADYERLMKELnQKLSNKN 1182
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQR-LAEYSWDEIDVASAE------REIAELEAEL-ERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1183 NKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLL--VKTKKELADSKQAETDHLILQASLKGELEAsqq 1260
Cdd:COG4913 685 DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELdeLQDRLEAAEDLARLELRALLEERFAAALGD--- 761
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 380818270 1261 qvEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYRQR 1300
Cdd:COG4913 762 --AVERELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
736-1309 |
2.19e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 736 EERDNLNKLLENEQVQKlFVKTQLYGFLKDMGSEVSEDGEEKDVVNILQAVSESLAKINEEKCNLVFQCDKKVFELEK-- 813
Cdd:PTZ00121 1240 EEAKKAEEERNNEEIRK-FEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKad 1318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 814 EIKCLQEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTcnkNE 893
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA---DE 1395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 894 IHNEKEKCSIKEHENLKPLLEQKESELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIK 973
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 974 LVAVKAKKELDSSRKETQTVREELESLR--SEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDV--EKERANNFEHHV 1049
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKkaAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKaeEKKKADELKKAE 1555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1050 EDLTRQLRNSTLQCEKINSDNEDLLARIETLQsnaKLLEVQILEVQRAKAMvDKELEAEKLQKEQKIKEHATTVNELEEL 1129
Cdd:PTZ00121 1556 ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK---KAEEARIEEVMKLYEE-EKKMKAEEAKKAEEAKIKAEELKKAEEE 1631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1130 QVQLQKEKKQLQKTMQELELVKKDAQQTTLMNmeiadyerlmKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEitsl 1209
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKA----------AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE---- 1697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1210 qssvQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQ 1289
Cdd:PTZ00121 1698 ----AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773
|
570 580
....*....|....*....|
gi 380818270 1290 HQRTLSAYRQRVTALQEESR 1309
Cdd:PTZ00121 1774 RKEKEAVIEEELDEEDEKRR 1793
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1000-1252 |
2.76e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.78 E-value: 2.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1000 LRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKEraNNFEHHVE---DLTRQLRNSTLQCEKINSDNEDLLAR 1076
Cdd:PHA02562 179 LNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQ--NKYDELVEeakTIKAEIEELTDELLNLVMDIEDPSAA 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1077 IETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQkeQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELvkkdaqq 1156
Cdd:PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCT--QQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEE------- 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1157 ttLMNmEIADYERLMKELNQKLSNKNNKIEDLEQEIKiqkqkqeTLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELAD 1236
Cdd:PHA02562 328 --IMD-EFNEQSKKLLELKNKISTNKQSLITLVDKAK-------KVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSE 397
|
250
....*....|....*.
gi 380818270 1237 SKQAETDHLILQASLK 1252
Cdd:PHA02562 398 LVKEKYHRGIVTDLLK 413
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1159-1364 |
2.86e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.39 E-value: 2.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1159 LMNMEIADYERLMKELNQK----LSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKEL 1234
Cdd:PHA02562 192 HIQQQIKTYNKNIEEQRKKngenIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKI 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1235 AD----------------SKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHE------HLKTSAEQHQR 1292
Cdd:PHA02562 272 EQfqkvikmyekggvcptCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEqskkllELKNKISTNKQ 351
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 380818270 1293 TLSAYRQRVTALQEESRAAKAEQATVTSEFESYkvrVHNVLKQQKNKSmsqaeteGAKQEREHLEMLIDQLK 1364
Cdd:PHA02562 352 SLITLVDKAKKVKAAIEELQAEFVDNAEELAKL---QDELDKIVKTKS-------ELVKEKYHRGIVTDLLK 413
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1108-1321 |
3.27e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.30 E-value: 3.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1108 EKLQKEQKIkehattvnELEELQVQLQKEK-----KQLQKTMQELELVKKDAQ-----QTTLMNMEIADYERLMKELNQK 1177
Cdd:PRK05771 23 EALHELGVV--------HIEDLKEELSNERlrklrSLLTKLSEALDKLRSYLPklnplREEKKKVSVKSLEELIKDVEEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1178 LSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQ-----SSVQQYEEKNTKIKQLLVKTKKELADSKQAETD--HLILQAS 1250
Cdd:PRK05771 95 LEKIEKEIKELEEEISELENEIKELEQEIERLEpwgnfDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDveNVEYIST 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1251 LKG-------------------------------ELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYRQ 1299
Cdd:PRK05771 175 DKGyvyvvvvvlkelsdeveeelkklgferleleEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYE 254
|
250 260
....*....|....*....|..
gi 380818270 1300 rvtALQEESRAAKAEQATVTSE 1321
Cdd:PRK05771 255 ---YLEIELERAEALSKFLKTD 273
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1124-1473 |
3.28e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.72 E-value: 3.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1124 NELEELQVQLQKEKKQLQKT---MQELELVKKDAQQTTLMNMEIA---DYERLMKELNQKLSNKNNKIEDLEQEIKIQKQ 1197
Cdd:PRK04863 786 KRIEQLRAEREELAERYATLsfdVQKLQRLHQAFSRFIGSHLAVAfeaDPEAELRQLNRRRVELERALADHESQEQQQRS 865
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1198 KQETLQEEITSLQSSVQQyeekntkIKQLLVKTKKELADSKQAEtdhliLQASLKGELEASQQQVEVYKI--QLAEITSE 1275
Cdd:PRK04863 866 QLEQAKEGLSALNRLLPR-------LNLLADETLADRVEEIREQ-----LDEAEEAKRFVQQHGNALAQLepIVSVLQSD 933
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1276 KHKiHEHLKTSAEQHQRTLSAYRQRVTALQE--ESRAAKA-EQAtvtsefesykvrvhnvlkqQKNKSMSQAETEGAKQE 1352
Cdd:PRK04863 934 PEQ-FEQLKQDYQQAQQTQRDAKQQAFALTEvvQRRAHFSyEDA-------------------AEMLAKNSDLNEKLRQR 993
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1353 REHLEMLIDQLKIKLQDSQNNLQMNVSELQTLQSEHDTLLERHNKMLQE----TVSKEAELREKLCSIQSENMMMKSEHT 1428
Cdd:PRK04863 994 LEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQElqdlGVPADSGAEERARARRDELHARLSANR 1073
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 380818270 1429 QTVSQLTSQnevlRNSFRDQVRHLQEEHRKTVETLQQQLSRVEAQ 1473
Cdd:PRK04863 1074 SRRNQLEKQ----LTFCEAEMDNLTKKLRKLERDYHEMREQVVNA 1114
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
600-1343 |
3.51e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.60 E-value: 3.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 600 INKLKTSYEEMDNFHKKCEREERLILELGKKVEQTT-QYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSE 678
Cdd:pfam12128 250 FNTLESAELRLSHLHFGYKSDETLIASRQEERQETSaELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALED 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 679 DKEV-LSAEVKSLYEENNKL---SSEKKQLSRDLEVFLSQKNDVILKEHITELEKKLQLmVEERDNLNKLLENEQVQKlf 754
Cdd:pfam12128 330 QHGAfLDADIETAAADQEQLpswQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQN-NRDIAGIKDKLAKIREAR-- 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 755 vktqlygflkDMGSEVSEDGEEKDVVNILQAVSESLAKINEEKcnlvfqcdkKVFELEKEIKCLQEESVVQCEELKSLLR 834
Cdd:pfam12128 407 ----------DRQLAVAEDDLQALESELREQLEAGKLEFNEEE---------YRLKSRLGELKLRLNQATATPELLLQLE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 835 DYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCNKNEIHNEKEKCSIKEH-ENLKPLL 913
Cdd:pfam12128 468 NFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFlRKEAPDW 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 914 EQKESELRDTraELILLKD---SLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINkiklvAVKAKKELDSSRKET 990
Cdd:pfam12128 548 EQSIGKVISP--ELLHRTDldpEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRER-----LDKAEEALQSAREKQ 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 991 QTVREELESLRSEKDQLSASMRDLIQAAESYKNLL--LEYEKQSEQLDVEKERANNFEHHVEDLT------RQLRNStLQ 1062
Cdd:pfam12128 621 AAAEEQLVQANGELEKASREETFARTALKNARLDLrrLFDEKQSEKDKKNKALAERKDSANERLNsleaqlKQLDKK-HQ 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1063 CEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQK 1142
Cdd:pfam12128 700 AWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRT 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1143 TMQELELVKKDAQqttlmnmEIADYERLMKE--------LNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQ 1214
Cdd:pfam12128 780 LERKIERIAVRRQ-------EVLRYFDWYQEtwlqrrprLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASE 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1215 QYEEKNTKIKQLLVKTKKELADSKQAETDhlilqASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRtl 1294
Cdd:pfam12128 853 KQQVRLSENLRGLRCEMSKLATLKEDANS-----EQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIADHSG-- 925
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 380818270 1295 SAYRQRVTALQEESRAAKAEQATVTSEFESYKVR--VHNVLKQQKNKSMSQ 1343
Cdd:pfam12128 926 SGLAETWESLREEDHYQNDKGIRLLDYRKLVPYLeqWFDVRVPQSIMVLRE 976
|
|
| CC149 |
pfam09789 |
Coiled-coil domain-containing protein 149-A; Members of this family have been annotated as ... |
980-1216 |
4.18e-04 |
|
Coiled-coil domain-containing protein 149-A; Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Pssm-ID: 462902 [Multi-domain] Cd Length: 314 Bit Score: 44.24 E-value: 4.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 980 KKELDSSRKETQTVREELESLRSEKDQLSAsmrdliqAAESYKNLLLEYEKQSEQLDVEKERANNFEHHVEDLTRQLRNS 1059
Cdd:pfam09789 1 KRKLQSKVEALLILSKELEKCRQERDQYKL-------MAEQLQERYQGLKKQLRELKAGNNDFKPDDREQVNLIQLLRDS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1060 TLQCEKINSDNEDLLARIETLQSNAKLLEVQIlEVQRAKAMVDKELEAEKLQKEQKIKehatTVNELEELQVQLQKEKKQ 1139
Cdd:pfam09789 74 REQNKCLRLEVEELRQKLNEAQGDIKLLREQI-ARQRLGGPDEGSISTRHFPLHEREE----LVKQLEKLRKKCQQLERD 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1140 LQKTMQELE--LVKKDAQQTTlmnmeiadYERLMKELNQKLSNKNNKIEDLEQ---EIKIQKQKQETLQEEITSLQSSVQ 1214
Cdd:pfam09789 149 LQSVLDEKEelETERDAYKCK--------AHRLNHELNYILGGDESRIVDIDAlimENRYLQERLKQLEEEKELAKQTLS 220
|
..
gi 380818270 1215 QY 1216
Cdd:pfam09789 221 KY 222
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
991-1148 |
4.44e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 4.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 991 QTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERAnnfEHHVEDLTRQLRNSTLQCEKINSDN 1070
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRL---ELEIEEVEARIKKYEEQLGNVRNNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1071 E--DLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELE 1148
Cdd:COG1579 90 EyeALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELA 169
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
976-1363 |
4.73e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.33 E-value: 4.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 976 AVKAKKELDSSRKETQTVREELESLRSEKDQLSASMRDL---IQAAESYKNLLLEYEKQSEQLDvekeranNFEHHVEDL 1052
Cdd:COG3096 287 ALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLeqdYQAASDHLNLVQTALRQQEKIE-------RYQEDLEEL 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1053 TRQLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAkamVDkELEAEKLQKEQKIK--EHATTVNELEEL- 1129
Cdd:COG3096 360 TERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQA---LD-VQQTRAIQYQQAVQalEKARALCGLPDLt 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1130 -------QVQLQKEKKQLQKTMQELElvkkdaQQTTLMNMEIADYERLMkELNQKLSNKNNK-------IEDLEQ--EIK 1193
Cdd:COG3096 436 penaedyLAAFRAKEQQATEEVLELE------QKLSVADAARRQFEKAY-ELVCKIAGEVERsqawqtaRELLRRyrSQQ 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1194 IQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETdhliLQASLKGELEASQQQVEVYKIQLAEIT 1273
Cdd:COG3096 509 ALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEE----LLAELEAQLEELEEQAAEAVEQRSELR 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1274 SEKHKIHEHLKTSAEQHQRTLSAyRQRVTALQEESRAAKAEQATVTSEFEsykvrvhNVLKQQKNKSMSQAETEgakQER 1353
Cdd:COG3096 585 QQLEQLRARIKELAARAPAWLAA-QDALERLREQSGEALADSQEVTAAMQ-------QLLEREREATVERDELA---ARK 653
|
410
....*....|
gi 380818270 1354 EHLEMLIDQL 1363
Cdd:COG3096 654 QALESQIERL 663
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
412-814 |
5.21e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.07 E-value: 5.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 412 NKQFCCTVEQHNKEVQSLKEQHQKEISELNETFLS-DSEKEKLTLMFEIQglkeqcdNLQQEKQEAILNYESlreimEIL 490
Cdd:COG5022 780 GFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSyLACIIKLQKTIKRE-------KKLRETEEVEFSLKA-----EVL 847
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 491 QTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNHLQGENEKLLSQqelVPELENTIKNLEEKNgv 570
Cdd:COG5022 848 IQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESE---IIELKKSLSSDLIEN-- 922
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 571 yLLSLSQRDTMLKELEAKIN-----SLTEEKDDFINKLKtsyEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKV 645
Cdd:COG5022 923 -LEFKTELIARLKKLLNNIDleegpSIEYVKLPELNKLH---EVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFK 998
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 646 NELTGGLEEtlKEKDQNDQKleklmvqmkvLSEDKEVLSAEVKSLYeenNKLSSEKKQLSRDLEVfLSQKNDVILKEHIT 725
Cdd:COG5022 999 KELAELSKQ--YGALQESTK----------QLKELPVEVAELQSAS---KIISSESTELSILKPL-QKLKGLLLLENNQL 1062
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 726 ELE-KKLQLMVEERDNLNKLLENEQVQKLFVKTQLYGFLKdMGSEVSEDGEEKDVVNILQAVSESLAKINEEKCNLVFQC 804
Cdd:COG5022 1063 QARyKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLE-VTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNT 1141
|
410
....*....|
gi 380818270 805 DKKVFELEKE 814
Cdd:COG5022 1142 LEPVFQKLSV 1151
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
84-347 |
8.57e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.30 E-value: 8.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 84 EKAETEQQCLSLKKENIkmkqeVEDSVTKMEDAHKELEQSHINyVKETENLKNELMAVRAKYSEDKANLQKeleeamnkq 163
Cdd:COG5022 853 RSLKAKKRFSLLKKETI-----YLQSAQRVELAERQLQELKID-VKSISSLKLVNLELESEIIELKKSLSS--------- 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 164 lELSEQLKFQNNSEDNVKKLQEEIEKIRPAFEEQILYLQKQLDATTDEK-KETVTQLQNIIEANSQHYQKNINSLqEELL 242
Cdd:COG5022 918 -DLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKlKETSEEYEDLLKKSTILVREGNKAN-SELK 995
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 243 QLKAIHQEEVKELMcQIEASAKEHETEINKLNELKENLVKQCEASEKNIQEKYECELENLRKATSNANQDNQMCSLLFQE 322
Cdd:COG5022 996 NFKKELAELSKQYG-ALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRE 1074
|
250 260
....*....|....*....|....*...
gi 380818270 323 NTFVEQV---VNEKVKHLEDTLKELESQ 347
Cdd:COG5022 1075 NSLLDDKqlyQLESTENLLKTINVKDLE 1102
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
459-753 |
8.69e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 8.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 459 IQGLKEQCDNLQQEKQEAiLNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETV- 537
Cdd:COG1196 195 LGELERQLEPLERQAEKA-ERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELr 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 538 NHLQGENEKLLSQQELVPELENTIKNLEEKNGVYLLSLSQRDTMLKELEAKINSLTEEKDDFINKLKTSYEEMDNFHKKC 617
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 618 EREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKL 697
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 380818270 698 SSEKKQLSRDLEVFLSQKNDVI-----LKEHITELEKKLQLMVEERDNLNKLLENEQVQKL 753
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEeeeeaLLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
98-1184 |
8.75e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.27 E-value: 8.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 98 ENIKMKQEVEDSVTKMEDAHKELEQSHINYVK----ETENLKNELMAV-----RAKYSEDKANLQKELEEAMNKQLELSE 168
Cdd:TIGR01612 690 DNTEDKAKLDDLKSKIDKEYDKIQNMETATVElhlsNIENKKNELLDIiveikKHIHGEINKDLNKILEDFKNKEKELSN 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 169 QLKFQNNSEDNVKKLQEEIEKIRPAFEEQIL------------YLQ-----KQLDATTDEKKETVTQLQNIIEAN----- 226
Cdd:TIGR01612 770 KINDYAKEKDELNKYKSKISEIKNHYNDQINidnikdedakqnYDKskeyiKTISIKEDEIFKIINEMKFMKDDFlnkvd 849
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 227 -----SQHYQKNINSLQEELLQLKAIHQEEV---------------KELMCQIEASAKEHETEINKLNELKENLvKQCEA 286
Cdd:TIGR01612 850 kfinfENNCKEKIDSEHEQFAELTNKIKAEIsddklndyekkfndsKSLINEINKSIEEEYQNINTLKKVDEYI-KICEN 928
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 287 SEKNIQEKYECELENLRKATSNANQDNQMCSLLFQENTFVEQVVNEKVKHLEDTLKE--LESQHSILKDEVTYMNNLKLK 364
Cdd:TIGR01612 929 TKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDKFDNTLIDKINELDKAFKDasLNDYEAKNNELIKYFNDLKAN 1008
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 365 LEMDAQHIKDEFFHEREDLEFKINELLLAKEEQGCVIE-----KLKSELAGLNKQFCCTVEQHNKEVQSLKEQHQKEISE 439
Cdd:TIGR01612 1009 LGKNKENMLYHQFDEKEKATNDIEQKIEDANKNIPNIEiaihtSIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNE 1088
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 440 LNE-----TFLSDSEKEKLTLMFEIQGLKEQCDNLQQEKQEAILNYESLREIMEILQTELGESAGKISQEFE-SMKQQQA 513
Cdd:TIGR01612 1089 IKEklkhyNFDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADkAISNDDP 1168
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 514 SDVHELQQKLRTAFTEKDALLETVNHLQGENEKLLSQQELVPELENTikNLEEKNGVYLLSLSQRD-------TMLKELE 586
Cdd:TIGR01612 1169 EEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGI--NLSYGKNLGKLFLEKIDeekkkseHMIKAME 1246
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 587 AKINSLTEEKDDF----------------INKLKTSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSElEQKVNELTG 650
Cdd:TIGR01612 1247 AYIEDLDEIKEKSpeienemgiemdikaeMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSE-ESDINDIKK 1325
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 651 GLEETLKEKDQNDQKLEKLMVQMK------VLSEDKEVLS--AEVKSLYEENNKlsSEKKQLSRDLEVFLSQKNDVILKE 722
Cdd:TIGR01612 1326 ELQKNLLDAQKHNSDINLYLNEIAniynilKLNKIKKIIDevKEYTKEIEENNK--NIKDELDKSEKLIKKIKDDINLEE 1403
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 723 hiteLEKKLQLMVEERDnLNKLLENEQVQKLFV---KTQLYGFLKDmgsevsEDGEEKDVV----NILQAVSESLAKINE 795
Cdd:TIGR01612 1404 ----CKSKIESTLDDKD-IDECIKKIKELKNHIlseESNIDTYFKN------ADENNENVLllfkNIEMADNKSQHILKI 1472
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 796 EKCNLVFQCDKKVFELEKEI------KCLQEESVVQCEELKSLLRDYEQE-KVLLRKELEeiqsekealqsdlLEMKNAN 868
Cdd:TIGR01612 1473 KKDNATNDHDFNINELKEHIdkskgcKDEADKNAKAIEKNKELFEQYKKDvTELLNKYSA-------------LAIKNKF 1539
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 869 EKTRLENQnllIQVEEVSQTCNKNEIHNEKEKCSIKEHENLKPLLEQKESELRDTRAELILLKDSLAkspSVQNDLLssv 948
Cdd:TIGR01612 1540 AKTKKDSE---IIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLE---NFENKFL--- 1610
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 949 KELEEKLENLEKEGKEKEEKINKIKLVAVKAKKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQA---AESYKNLL 1025
Cdd:TIGR01612 1611 KISDIKKKINDCLKETESIEKKISSFSIDSQDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDELdseIEKIEIDV 1690
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1026 LEYEKQSEQLDVEK--ERANNFEHHVEDlTRQLRNSTLQCEKINSDNEDLlariETLQSNAKLLEVQI-LEVQRAKAMVD 1102
Cdd:TIGR01612 1691 DQHKKNYEIGIIEKikEIAIANKEEIES-IKELIEPTIENLISSFNTNDL----EGIDPNEKLEEYNTeIGDIYEEFIEL 1765
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1103 KELEAEKLQKeqkIKEHATTVNELEELQVQLQKEkkqlqkTMQELELVKKdaQQTTLMNMEIADYERLMKELNQKLSNKN 1182
Cdd:TIGR01612 1766 YNIIAGCLET---VSKEPITYDEIKNTRINAQNE------FLKIIEIEKK--SKSYLDDIEAKEFDRIINHFKKKLDHVN 1834
|
..
gi 380818270 1183 NK 1184
Cdd:TIGR01612 1835 DK 1836
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
332-529 |
8.85e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 8.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 332 EKVKHLEDTLKELESQHSILKDEVTymnnlKLKLEMDAQHIKDEFFHEREDLEFKINELLLAKEEqgcvIEKLKSELAGL 411
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLE-----ALEAELDALQERREALQRLAEYSWDEIDVASAERE----IAELEAELERL 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 412 nkqfcctvEQHNKEVQSLKEQHQKEISELNETflsdsEKEKLTLMFEIQGLKEQCDNLQQEKQEAILNYESLREIMEILQ 491
Cdd:COG4913 681 --------DASSDDLAALEEQLEELEAELEEL-----EEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL 747
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 380818270 492 TELGE----------SAGKISQEFESMKQQQASDVHELQQKLRTAFTE 529
Cdd:COG4913 748 RALLEerfaaalgdaVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1039-1624 |
9.51e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 9.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1039 KERANNFEHHVEDLTRQLRNSTLQCEKINSDNE--DLLARIETLQSNAKLLEVQI--LEVQRAKAMVDKELEAEKL---- 1110
Cdd:PRK02224 168 RERASDARLGVERVLSDQRGSLDQLKAQIEEKEekDLHERLNGLESELAELDEEIerYEEQREQARETRDEADEVLeehe 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1111 QKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKE-LNQKLSNKNNKIEDLE 1189
Cdd:PRK02224 248 ERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEaVEARREELEDRDEELR 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1190 QEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQL 1269
Cdd:PRK02224 328 DRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1270 -------AEITSEKHKIHEHLkTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTSEfesykvRVHNVLKQQKNKSMS 1342
Cdd:PRK02224 408 gnaedflEELREERDELRERE-AELEATLRTARERVEEAEALLEAGKCPECGQPVEGSP------HVETIEEDRERVEEL 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1343 QAETEGAKQEREHLEMLIDQLK--IKLQDSQNNLQMNVSELQTLQSEHDTLLErhnkmlqETVSKEAELREKlcsiqsen 1420
Cdd:PRK02224 481 EAELEDLEEEVEEVEERLERAEdlVEAEDRIERLEERREDLEELIAERRETIE-------EKRERAEELRER-------- 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1421 mmmksehtqtVSQLTSQNEVLRNSFRDQvRHLQEEHRKTVETLQQQLSRVEAQLFQLKNEPTTRSPVSS-QQSLKNLRER 1499
Cdd:PRK02224 546 ----------AAELEAEAEEKREAAAEA-EEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADaEDEIERLREK 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1500 RntdlplldmhtvtrEEGEGMETTDTESVSSASTYTQSLEQLLNspetkfepplwhaEFTKEELVQKLSSTTKSADHLNG 1579
Cdd:PRK02224 615 R--------------EALAELNDERRERLAEKRERKRELEAEFD-------------EARIEEAREDKERAEEYLEQVEE 667
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 380818270 1580 LLRETEATNAILMEQIKLLKSEIRRLERNQEREKSAAN-LEYLKNV 1624
Cdd:PRK02224 668 KLDELREERDDLQAEIGAVENELEELEELRERREALENrVEALEAL 713
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1077-1325 |
1.16e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1077 IETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQ 1156
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1157 T----TLMNM-----EIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKntkikqll 1227
Cdd:COG3883 98 SggsvSYLDVllgseSFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA-------- 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1228 vktkKELADSKQAETDHLIlqASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYRQRVTALQEE 1307
Cdd:COG3883 170 ----KAELEAQQAEQEALL--AQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 243
|
250
....*....|....*...
gi 380818270 1308 SRAAKAEQATVTSEFESY 1325
Cdd:COG3883 244 ASAAGAGAAGAAGAAAGS 261
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
71-280 |
1.37e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 71 IKALTERLDAILLEKAETEQQCLSLKKENIKMKQEVEDSVTKMEDAHKELEQSHINYVKETENLKnELMAVRAKYSEDKA 150
Cdd:TIGR02168 791 IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE-SLAAEIEELEELIE 869
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 151 NLQKELEEAMNKQLELSEQLKFQNNSEDNvkkLQEEIEKIrpafEEQILYLQKQLDATTDEKKETVTQLQNIieansqhy 230
Cdd:TIGR02168 870 ELESELEALLNERASLEEALALLRSELEE---LSEELREL----ESKRSELRRELEELREKLAQLELRLEGL-------- 934
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 380818270 231 QKNINSLQEELLQLKAIHQEEVKELMCQIEASAKEHETEINKLNELKENL 280
Cdd:TIGR02168 935 EVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1279-1480 |
1.59e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1279 IHEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAEqatvtseFESYKVRvHNVLKQQKNKSMSQAETEGAKQEREHLEM 1358
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAA-------LEEFRQK-NGLVDLSEEAKLLLQQLSELESQLAEARA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1359 LIDQLKIKLQDSQNNLQMNVSELQTLQSehDTLLERHNKMLQETVSKEAELREKLcsiqsenmmmKSEHtQTVSQLTSQN 1438
Cdd:COG3206 234 ELAEAEARLAALRAQLGSGPDALPELLQ--SPVIQQLRAQLAELEAELAELSARY----------TPNH-PDVIALRAQI 300
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 380818270 1439 EVLRNSFRDQVRHLQEEHRKTVETLQQQLSRVEAQLFQLKNE 1480
Cdd:COG3206 301 AALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR 342
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
370-1149 |
1.67e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 370 QHIKDEFFHEREDLEFKINELLLAKEEQGCVIEK----LKSELAGLNKQFCCTVEQHNKEVQS---LKEQHQKEISELNE 442
Cdd:pfam15921 77 ERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQsvidLQTKLQEMQMERDAMADIRRRESQSqedLRNQLQNTVHELEA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 443 tflSDSEKEKLtlmfeiqgLKEQCDNLQQEKQEAILNYESLREIMEILqTELGESAGKISQEFESMKQQQASDVHELQQK 522
Cdd:pfam15921 157 ---AKCLKEDM--------LEDSNTQIEQLRKMMLSHEGVLQEIRSIL-VDFEEASGKKIYEHDSMSTMHFRSLGSAISK 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 523 -LRTAFTEKDALLETVNHLQGENEKLLSqqelvpelentiknlEEKNGVYLLSLSQRD---TMLKELEAKINSLTEEKDD 598
Cdd:pfam15921 225 iLRELDTEISYLKGRIFPVEDQLEALKS---------------ESQNKIELLLQQHQDrieQLISEHEVEITGLTEKASS 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 599 FINKLKTSYEEMDNFHKKCEREERLILelgkkveqttQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVqmkvlse 678
Cdd:pfam15921 290 ARSQANSIQSQLEIIQEQARNQNSMYM----------RQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLV------- 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 679 dkeVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSqknDVILKEHITELEKKLQLMVEERDNLNKL----LENEQVQKLF 754
Cdd:pfam15921 353 ---LANSELTEARTERDQFSQESGNLDDQLQKLLA---DLHKREKELSLEKEQNKRLWDRDTGNSItidhLRRELDDRNM 426
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 755 VKTQLYGFLKDMGSEVSedGEEKDVVNILQAVSESLAKINEEKCNL--VFQCDKKVFELEKEIKCLQEESVVQCEELKSL 832
Cdd:pfam15921 427 EVQRLEALLKAMKSECQ--GQMERQMAAIQGKNESLEKVSSLTAQLesTKEMLRKVVEELTAKKMTLESSERTVSDLTAS 504
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 833 LRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTR---LENQNLLIQVEEVSQTCNKNEIHNEKEKCSIKEHENL 909
Cdd:pfam15921 505 LQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRnvqTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRT 584
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 910 KPLLE----QKESELRDTRAELILLKDSLAKSPSVQNDLLSSVkeleekleNLEKEGKEKEEKINKIKLVAVK-AKKELD 984
Cdd:pfam15921 585 AGAMQvekaQLEKEINDRRLELQEFKILKDKKDAKIRELEARV--------SDLELEKVKLVNAGSERLRAVKdIKQERD 656
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 985 SSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNlLLEYEKQSEQLDVEKERaNNFEHHVEDLTRQLRNSTLQCE 1064
Cdd:pfam15921 657 QLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTN-KLKMQLKSAQSELEQTR-NTLKSMEGSDGHAMKVAMGMQK 734
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1065 KINSDNedllARIETLQSNAKLLEVQILEVQRAKAMvdkeLEAEKLQKEQKIKEHATTVNELE-ELQVqLQKEKKQLQKT 1143
Cdd:pfam15921 735 QITAKR----GQIDALQSKIQFLEEAMTNANKEKHF----LKEEKNKLSQELSTVATEKNKMAgELEV-LRSQERRLKEK 805
|
....*.
gi 380818270 1144 MQELEL 1149
Cdd:pfam15921 806 VANMEV 811
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
975-1226 |
1.67e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 975 VAVKAKKELDSSRKETQtvREELESLRSEKDQLSAS-MRDLiqaaesyKNLLLEYEKQSEQLDVEKERANNFEHHVEDLT 1053
Cdd:pfam17380 342 MAMERERELERIRQEER--KRELERIRQEEIAMEISrMREL-------ERLQMERQQKNERVRQELEAARKVKILEEERQ 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1054 RQLRNSTLQCEKINSDnedllarietlQSNAKLLEVQILEVQRAKAMvdKELEAEKLQKEQKIKEhaTTVNELEELQVQL 1133
Cdd:pfam17380 413 RKIQQQKVEMEQIRAE-----------QEEARQREVRRLEEERAREM--ERVRLEEQERQQQVER--LRQQEEERKRKKL 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1134 QKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLSNKNNKI-EDLEQEIKIQKQKQETLQEEITSLQSS 1212
Cdd:pfam17380 478 ELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIyEEERRREAEEERRKQQEMEERRRIQEQ 557
|
250
....*....|....
gi 380818270 1213 VQQYEEKNTKIKQL 1226
Cdd:pfam17380 558 MRKATEERSRLEAM 571
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
980-1438 |
1.95e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.29 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 980 KKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEyeKQSEQLDVEKERANNFEHHVEDLTRQLRns 1059
Cdd:pfam12128 289 NQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLD--ADIETAAADQEQLPSWQSELENLEERLK-- 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1060 tLQCEKINsdneDLLARIETLQSNAKLLEVQILEVqrakamVDKELEAeklQKEQKIKEHATTVNELEELQVQLQK---- 1135
Cdd:pfam12128 365 -ALTGKHQ----DVTAKYNRRRSKIKEQNNRDIAG------IKDKLAK---IREARDRQLAVAEDDLQALESELREqlea 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1136 -------EKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITS 1208
Cdd:pfam12128 431 gklefneEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQ 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1209 LQSSVQQYEEKNTKIKQ--------LLVKTKKELADSKQAE----TDHLILQASLKGELEASQ--QQVEVYKIQL---AE 1271
Cdd:pfam12128 511 ASRRLEERQSALDELELqlfpqagtLLHFLRKEAPDWEQSIgkviSPELLHRTDLDPEVWDGSvgGELNLYGVKLdlkRI 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1272 ITSEKHKIHEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAE----QATVTSEFESYK-----VRVHNVLKQQKNKSMS 1342
Cdd:pfam12128 591 DVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGElekaSREETFARTALKnarldLRRLFDEKQSEKDKKN 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1343 QAETEGAKQEREHLEMLIDQLKIKLQDSQnnlqmnvselQTLQSEHDTLLERHNKMLQETVSKEAELREKLCSIQSENMM 1422
Cdd:pfam12128 671 KALAERKDSANERLNSLEAQLKQLDKKHQ----------AWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAA 740
|
490
....*....|....*.
gi 380818270 1423 MKSEHTQTVSQLTSQN 1438
Cdd:pfam12128 741 RRSGAKAELKALETWY 756
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
96-920 |
2.06e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 96 KKENIKMKQEVEDSVTKMEDAHKELEQSHINYVKETENLKNELMAVRAKYSEDKANLQKELEEAMNKQLELSEQLKFQNN 175
Cdd:pfam02463 171 KKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQ 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 176 SEDNVKKLQEEIEKIRPAFEEQILYLQKQLDATTDEKKETVTQLQNIIEANSQHYQKNINSLQEEL------LQLKAIHQ 249
Cdd:pfam02463 251 EEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLkesekeKKKAEKEL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 250 EEVKELMCQIEASAKEHETEINKLNELKENLVKQCEASEKNIQEKYECELENLRKATSNANQDNQMCSLLFQENTFVEQV 329
Cdd:pfam02463 331 KKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 330 VNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINELLLAKEEQgcvieklksela 409
Cdd:pfam02463 411 LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQ------------ 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 410 glnkqfccTVEQHNKEVQSLKEQHQKEISELNETFLSDSEKEKLTLMFEIQGLKEQCDNLQQEKQEAILNYESLREIMEI 489
Cdd:pfam02463 479 --------LVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVI 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 490 LQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNHLQGENEKLLSQQELVPELENTIKNLEEKNG 569
Cdd:pfam02463 551 VEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILK 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 570 VYLLSLSQRDTMLKELEAKINSLTEEKDDFINKLKTSYEEMDNFHKKCEREERLILELGKKVEqttQYNSELEQKVNELT 649
Cdd:pfam02463 631 DTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEE---ILRRQLEIKKKEQR 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 650 GGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKNDVILKEHITELEK 729
Cdd:pfam02463 708 EKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 730 KLQLMVEERDNLNKLLENEQVQKLFVKTQLYGFLKDMGSEVSEDGEEKDVVNILQAVSESLAKINEEKCNLvfqcdkkVF 809
Cdd:pfam02463 788 VEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELER-------LE 860
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 810 ELEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTC 889
Cdd:pfam02463 861 EEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEEL 940
|
810 820 830
....*....|....*....|....*....|.
gi 380818270 890 NKNEIHNEKEKCSIKEHENLKPLLEQKESEL 920
Cdd:pfam02463 941 LLEEADEKEKEENNKEEEEERNKRLLLAKEE 971
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
519-767 |
2.47e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.31 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 519 LQQKLRTAFTEKDALLETVNHLQgenEKLLSQQELVPELENTIK-NLEEKNGVYllslsqrDTMLKE---LEAKINSLTE 594
Cdd:PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQ---QQIKTYNKNIEEQRKKNGeNIARKQNKY-------DELVEEaktIKAEIEELTD 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 595 EKDDF----------INKLKTSYEEMDNFHKKCEREERLILELG------KKVEQTTQYNSELEQKVNELTGGLEETLKE 658
Cdd:PHA02562 242 ELLNLvmdiedpsaaLNKLNTAAAKIKSKIEQFQKVIKMYEKGGvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTA 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 659 KDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRdlevflSQKNDVILKEHITELEKKLQLMVEER 738
Cdd:PHA02562 322 IDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEE------LQAEFVDNAEELAKLQDELDKIVKTK 395
|
250 260
....*....|....*....|....*....
gi 380818270 739 DNLnklleneqVQKLFVKTQLYGFLKDMG 767
Cdd:PHA02562 396 SEL--------VKEKYHRGIVTDLLKDSG 416
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
57-732 |
2.57e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 2.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 57 ELKSKPVTEgtDDIIKALTERLDAILLE-------KAETEQQCLSLKKENIKMKQEVEDSVTKMEDAHKELEQSHINYvK 129
Cdd:TIGR04523 86 DLNDKLKKN--KDKINKLNSDLSKINSEikndkeqKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKY-N 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 130 ETENLKNELMAVRAKYSEDKANLQKELEEAMNKQLELSEQLKFQNNSEDNVKKLQEEI---EKIRPAFEEQILYLQKQLD 206
Cdd:TIGR04523 163 DLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQIselKKQNNQLKDNIEKKQQEIN 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 207 ATTDEKKETVTQLQNIIEANsqhyQKNINSLQEELLQLkaihqEEVKELMCQIEASAKEHETEINKLNELKE-NLVKQCE 285
Cdd:TIGR04523 243 EKTTEISNTQTQLNQLKDEQ----NKIKKQLSEKQKEL-----EQNNKKIKELEKQLNQLKSEISDLNNQKEqDWNKELK 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 286 ASEKNIQEKYECELENLRKATSNANQDNQMCSLLFQENTFVEQVVNEKVKHLEDTLKELES---QHSILKDEVTYMNNLK 362
Cdd:TIGR04523 314 SELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKlkkENQSYKQEIKNLESQI 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 363 LKLEMDAQHIKDeffhEREDLEFKINELLLAKEEQGCVIEKLKSelaglnkqfccTVEQHNKEVQSLKEQ-HQKEISELN 441
Cdd:TIGR04523 394 NDLESKIQNQEK----LNQQKDEQIKKLQQEKELLEKEIERLKE-----------TIIKNNSEIKDLTNQdSVKELIIKN 458
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 442 ETFLSDSEKEKL-TLMFEIQGLKEQCDNLQQEKQEAILNYESLREIMEILQTELGESAGKISqEFESMKQQQASDVHELQ 520
Cdd:TIGR04523 459 LDNTRESLETQLkVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKIS-SLKEKIEKLESEKKEKE 537
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 521 QKLRTAFTEKDALLETVNHLQGENEKLLSQQELVpELENTIKNLEEKNgvyllslSQRDTMLKELEAKINSLTEEKDDFI 600
Cdd:TIGR04523 538 SKISDLEDELNKDDFELKKENLEKEIDEKNKEIE-ELKQTQKSLKKKQ-------EEKQELIDQKEKEKKDLIKEIEEKE 609
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 601 NKLKTSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKV-LSED 679
Cdd:TIGR04523 610 KKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDwLKEL 689
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 380818270 680 KEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKNDVILKEHITELEKKLQ 732
Cdd:TIGR04523 690 SLHYKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNFNKKFD 742
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
72-898 |
2.59e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 2.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 72 KALTERLDAILLEKAETEQQCLSLKK--ENIKMKQEVE--DSVTKMEDAHKELEQSHINYVKETENLKNELMAVRAKYSE 147
Cdd:PTZ00121 1097 FGKAEEAKKTETGKAEEARKAEEAKKkaEDARKAEEARkaEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAK 1176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 148 DKANLQKELEEAMNKQLELSEQLKFQNNSE--DNVKKLQE--------EIEKIRPAFEEQilylQKQLDATTDEKKETVT 217
Cdd:PTZ00121 1177 KAEAARKAEEVRKAEELRKAEDARKAEAARkaEEERKAEEarkaedakKAEAVKKAEEAK----KDAEEAKKAEEERNNE 1252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 218 QLQNIIEANSQHYQKNINSLQEEllqlKAIHQEEVKELMCQIEASAKEHETEINKLNELKENLVKQCEASE-KNIQEKYE 296
Cdd:PTZ00121 1253 EIRKFEEARMAHFARRQAAIKAE----EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEaKKKAEEAK 1328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 297 CELENLRKATSNANQDNQMCSLLFQENTFVEQVVNEKVKHLEDTLKELESQHSILK---DEVTYMNNLKLKLEMDAQhiK 373
Cdd:PTZ00121 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKkkaEEKKKADEAKKKAEEDKK--K 1406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 374 DEFFHEREDLEFKINELLLAKEEQGCVIE-KLKSELAGLNKQFCCTVEQHNKEVQSLKEQHQKEiselnetfLSDSEKEK 452
Cdd:PTZ00121 1407 ADELKKAAAAKKKADEAKKKAEEKKKADEaKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK--------KADEAKKK 1478
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 453 LTLMFEIQGLKEQCDNLQQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDA 532
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELK 1558
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 533 LLETVNHLQgENEKLLSQQELVPELENTIKNLEEKNGVYLLSLSQRDTMLKELEAKINSLTEEKDDFINKLKTSYEEMDN 612
Cdd:PTZ00121 1559 KAEEKKKAE-EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQ 1637
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 613 FHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLM--------VQMKVLSEDKEVLS 684
Cdd:PTZ00121 1638 LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeaeeakkAEELKKKEAEEKKK 1717
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 685 AEVKSLYEENNKLSSE--KKQLSRDLEVFLSQKNDVILKEHITELEKKLQLMVEERDNLNKLLENEQVQKlfvktqlygf 762
Cdd:PTZ00121 1718 AEELKKAEEENKIKAEeaKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE---------- 1787
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 763 lKDMGSEVSEDGEEKDVVNILQAVSESlakinEEKCNLVFQCDKKVFELE-KEIKCLQEESVVQCEELKSLLRDYEQEKV 841
Cdd:PTZ00121 1788 -EDEKRRMEVDKKIKDIFDNFANIIEG-----GKEGNLVINDSKEMEDSAiKEVADSKNMQLEEADAFEKHKFNKNNENG 1861
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*..
gi 380818270 842 LLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCNKNEIHNEK 898
Cdd:PTZ00121 1862 EDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIDDK 1918
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1066-1204 |
2.79e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 2.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1066 INSDNEDLLARIETLQSNAKLLEVQILEVQRakamvdKELEAEKLQKEQKikehattvNELEELQVQLQKEKKQLQKTMQ 1145
Cdd:PRK00409 511 IGEDKEKLNELIASLEELERELEQKAEEAEA------LLKEAEKLKEELE--------EKKEKLQEEEDKLLEEAEKEAQ 576
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 380818270 1146 E-LELVKKDAQQT--TLMNMEIADYERL-MKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQE 1204
Cdd:PRK00409 577 QaIKEAKKEADEIikELRQLQKGGYASVkAHELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1085-1219 |
3.23e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1085 KLLEVQILEVQ-RAKAMVD---KELEAEKLQKEQKIKEhattvnELEELQVQLQKEKKQLQKTMQELElvkkdaqqttlm 1160
Cdd:PRK12704 27 KIAEAKIKEAEeEAKRILEeakKEAEAIKKEALLEAKE------EIHKLRNEFEKELRERRNELQKLE------------ 88
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 380818270 1161 nmeiadyERLMKELNQkLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEK 1219
Cdd:PRK12704 89 -------KRLLQKEEN-LDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEE 139
|
|
| YydB |
COG5293 |
Uncharacterized conserved protein YydD, contains DUF2326 domain [Function unknown]; |
469-737 |
3.31e-03 |
|
Uncharacterized conserved protein YydD, contains DUF2326 domain [Function unknown];
Pssm-ID: 444096 [Multi-domain] Cd Length: 572 Bit Score: 42.24 E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 469 LQQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEK--DALLETVNHLQGENEK 546
Cdd:COG5293 182 LAAEKYELKEEIKELKKLRKALKDELIGSVVKSISELRAEILELEEEIEKLEKDLEKFDVAEnyEELEKELDELKREINE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 547 LLSQQElvpELENTIKNLEEkngvyllSL-SQRDTMLKELEAKINSLTEEKDDFINKlktSYEEMDNFHKKCEREERliL 625
Cdd:COG5293 262 LRNERY---SLERRLKKIER-------SLeEEIDIDPDELEKLYEEAGVFFPDQVKK---RFEEVEAFHKSIVENRR--E 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 626 ELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQND--QKLEKLMVQMKVLSEDKEVLSA---EVKSLYEENNKLSSE 700
Cdd:COG5293 327 YLEEEIAELEAELEELEAELAELGKERAELLSLLDSKGalDKYKELQEELAELEAELEELESrleKLQELEDEIRELKEE 406
|
250 260 270
....*....|....*....|....*....|....*..
gi 380818270 701 KKQLSRDLEVFLSQKndvilKEHITELEKKLQLMVEE 737
Cdd:COG5293 407 RAELKEEIESDIEER-----KELLDEINKLFSEIVEE 438
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1089-1371 |
3.88e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.43 E-value: 3.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1089 VQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLmnmEIADYE 1168
Cdd:COG4372 24 ILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQA---ELAQAQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1169 RLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQ 1248
Cdd:COG4372 101 EELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1249 ASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTSEFESYKVR 1328
Cdd:COG4372 181 AEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEI 260
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 380818270 1329 VHNVLKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQ 1371
Cdd:COG4372 261 EELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLN 303
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
982-1239 |
4.06e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.12 E-value: 4.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 982 ELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVekeranNFEHHVEDLTRQLRNS-- 1059
Cdd:pfam10174 469 ELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEI------AVEQKKEECSKLENQLkk 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1060 TLQCEKINSDNEDLLARIETLQSNAKLLEVqilEVQRAKAMVD------KELEAEKLQKEQKIkehattvNELEELQVQL 1133
Cdd:pfam10174 543 AHNAEEAVRTNPEINDRIRLLEQEVARYKE---ESGKAQAEVErllgilREVENEKNDKDKKI-------AELESLTLRQ 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1134 QKE--KKQLQKTMQELELVKKDAQQttlmnmeiaDYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQS 1211
Cdd:pfam10174 613 MKEqnKKVANIKHGQQEMKKKGAQL---------LEEARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQ 683
|
250 260
....*....|....*....|....*...
gi 380818270 1212 SVQQYEEKNTKIKQLLVKTKKELADSKQ 1239
Cdd:pfam10174 684 SLAEKDGHLTNLRAERRKQLEEILEMKQ 711
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
530-1096 |
4.48e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.81 E-value: 4.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 530 KDALLETVNHLQGENEKLLSQQ-ELVPELENTIKNLEEKNGVYLLslsqRDTMLKELEAKINSLteekDDFINKLKTSYE 608
Cdd:PRK01156 126 KDVFLNSIFVGQGEMDSLISGDpAQRKKILDEILEINSLERNYDK----LKDVIDMLRAEISNI----DYLEEKLKSSNL 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 609 EMDNFHKKCEREERLILELGKKVEQ-TTQYNSELEQKVNeltggLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEV 687
Cdd:PRK01156 198 ELENIKKQIADDEKSHSITLKEIERlSIEYNNAMDDYNN-----LKSALNELSSLEDMKNRYESEIKTAESDLSMELEKN 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 688 ---KSLYEENNKLSSEKKQLSRD-LEVFLSQKNDVI-LKEHITELEKKLQlmvEERDNLNKLLENEQVQKLFVKTQL-YG 761
Cdd:PRK01156 273 nyyKELEERHMKIINDPVYKNRNyINDYFKYKNDIEnKKQILSNIDAEIN---KYHAIIKKLSVLQKDYNDYIKKKSrYD 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 762 FLKDMGSEVSEDgeEKDVVNILQAVSESLAKINEEKCNLVFQCD------KKVFELEKEIKCLQEESVVQCEELKSLLRD 835
Cdd:PRK01156 350 DLNNQILELEGY--EMDYNSYLKSIESLKKKIEEYSKNIERMSAfiseilKIQEIDPDAIKKELNEINVKLQDISSKVSS 427
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 836 YEQEKVLLRKELEEIQSEKEALQ---------SDLLEMKN-------ANEKTRLENQnlLIQVEEVSQTCNKNEIHNEK- 898
Cdd:PRK01156 428 LNQRIRALRENLDELSRNMEMLNgqsvcpvcgTTLGEEKSnhiinhyNEKKSRLEEK--IREIEIEVKDIDEKIVDLKKr 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 899 ----EKCSIKEHENLKPLLEQKESELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKL 974
Cdd:PRK01156 506 keylESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETN 585
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 975 VAVK--AKKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLE--------------YEKQSEQLDVE 1038
Cdd:PRK01156 586 RSRSneIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQEnkilieklrgkidnYKKQIAEIDSI 665
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 380818270 1039 KERANNFEHHVEDLTRQLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQR 1096
Cdd:PRK01156 666 IPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINE 723
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1099-1349 |
4.49e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1099 AMVDKELEAEKLQKEQKIKEHATTVNELEELQvqlqkekKQLQKTMQELElvkkdaqqttlmnmeiadyerlmkELNQKL 1178
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQ-------AELEELNEEYN------------------------ELQAEL 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1179 SNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLvkTKKELAD--------SKQAETDHLILQas 1250
Cdd:COG3883 61 EALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYLDVLL--GSESFSDfldrlsalSKIADADADLLE-- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1251 lkgELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTSEFESYKVRVH 1330
Cdd:COG3883 137 ---ELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAA 213
|
250
....*....|....*....
gi 380818270 1331 NVLKQQKNKSMSQAETEGA 1349
Cdd:COG3883 214 AAAAAAAAAAAAAAAAAAA 232
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
146-476 |
4.55e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 4.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 146 SEDKANLQKELEEAMNKQ-------LELSEQLKFQNNSEDNVKKLQEEIEKIRPAFEEQILYLQKQLDATTDEKKETVTQ 218
Cdd:TIGR02169 680 RERLEGLKRELSSLQSELrrienrlDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 219 LQNiIEANSQHYQKNINSLQEELLQLKA-IHQEEVKELMCQIEASAKEHETEINKLNELKENLVKqcEASEKNIQEKYEC 297
Cdd:TIGR02169 760 LKE-LEARIEELEEDLHKLEEALNDLEArLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNR--LTLEKEYLEKEIQ 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 298 ELENLRKATSnaNQDNQMCSLLFQENTFVEQvVNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFF 377
Cdd:TIGR02169 837 ELQEQRIDLK--EQIKSIEKEIENLNGKKEE-LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 378 HEREDLEfKINELLLAKEEQGCVIEKLKSEL---------AGLNKQFCCTVEQhnkEVQSLKEQHQKEISELNETF--LS 446
Cdd:TIGR02169 914 KKRKRLS-ELKAKLEALEEELSEIEDPKGEDeeipeeelsLEDVQAELQRVEE---EIRALEPVNMLAIQEYEEVLkrLD 989
|
330 340 350
....*....|....*....|....*....|
gi 380818270 447 DSEKEKLTLMFEIQGLKEQCDNLQQEKQEA 476
Cdd:TIGR02169 990 ELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1185-1419 |
4.96e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 4.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1185 IEDLEQEIKIQKQKQETLqEEITSLQSSVQQYEEKNTKIKQLlvktkKELADSKQAETDHLILQAslkgELEASQQQVEV 1264
Cdd:COG4913 237 LERAHEALEDAREQIELL-EPIRELAERYAAARERLAELEYL-----RAALRLWFAQRRLELLEA----ELEELRAELAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1265 YKIQLAEITSEKHKIHEHLktsAEQHQRTLSAYRQRVTALQEESRAAKAEQATVtsefesykvrvhnvlkqqknksmsqa 1344
Cdd:COG4913 307 LEAELERLEARLDALREEL---DELEAQIRGNGGDRLEQLEREIERLERELEER-------------------------- 357
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 380818270 1345 etegaKQEREHLEMLIDQLKIKLQDSQNNLQMNVSELQTLQSEHDTLLERHNKMLQETVSKEAELREKLCSIQSE 1419
Cdd:COG4913 358 -----ERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
981-1183 |
5.13e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 5.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 981 KELDSSRKETQTVREELESL-------------RSEKDQLSA--SMRDLIQAAESYKNLLLEYEKQSEQLDVEKERANNF 1045
Cdd:COG4913 235 DDLERAHEALEDAREQIELLepirelaeryaaaRERLAELEYlrAALRLWFAQRRLELLEAELEELRAELARLEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1046 EHHVEDLTRQLRNSTLQCEKINSDnedllaRIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNE 1125
Cdd:COG4913 315 EARLDALREELDELEAQIRGNGGD------RLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAE 388
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 380818270 1126 LEELQVQLQKEKKQLQKTMQELELVKKDAQQttlmnmeiaDYERLMKELNQKLSNKNN 1183
Cdd:COG4913 389 AAALLEALEEELEALEEALAEAEAALRDLRR---------ELRELEAEIASLERRKSN 437
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1090-1206 |
6.56e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 6.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1090 QILEVQRAKAMVDKELEAEKL---------QKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTtlm 1160
Cdd:COG2433 380 EALEELIEKELPEEEPEAEREkeheereltEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSE--- 456
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 380818270 1161 nmeiadyERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEI 1206
Cdd:COG2433 457 -------ERREIRKDREISRLDREIERLERELEEERERIEELKRKL 495
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1004-1215 |
6.90e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 6.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1004 KDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDV------EKERANNFEHHVEDLTRQLRNSTLQCEKINSDNEDLLARI 1077
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAaleefrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1078 ETLQSNAKLLEVQILEVQRAKAMVD-----KELEAEKLQKEQKIKEHATTV----NELEELQVQLQKEKKQLQKTMqELE 1148
Cdd:COG3206 243 AALRAQLGSGPDALPELLQSPVIQQlraqlAELEAELAELSARYTPNHPDVialrAQIAALRAQLQQEAQRILASL-EAE 321
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 380818270 1149 LVKKDAQQTTLMNmEIADYERLMKELNQKLSnknnKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQ 1215
Cdd:COG3206 322 LEALQAREASLQA-QLAQLEARLAELPELEA----ELRRLEREVEVARELYESLLQRLEEARLAEAL 383
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
72-352 |
6.99e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.44 E-value: 6.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 72 KALTERLDAILLEKAETEQQclslKKENIKMKQEVEDSVTKMEDAHKELeqshinyvketENLKNELMAVRAKYSEDK-- 149
Cdd:PRK11281 59 KLVQQDLEQTLALLDKIDRQ----KEETEQLKQQLAQAPAKLRQAQAEL-----------EALKDDNDEETRETLSTLsl 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 150 ANLQKELEEAMNKQLELSEQLKFQNNSEDNVKKLQEEIEKIRPAFEEQILYLQKQLDATTDEKKETVTQLQNIIEAnSQH 229
Cdd:PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQA-EQA 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 230 YQKNINSLQEELL----QLKAIHQEEVKELMCQIEASAKEHE---TEIN-KLNELKENLVKQCEASEKN--IQE----KY 295
Cdd:PRK11281 203 LLNAQNDLQRKSLegntQLQDLLQKQRDYLTARIQRLEHQLQllqEAINsKRLTLSEKTVQEAQSQDEAarIQAnplvAQ 282
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 380818270 296 ECEL-----ENLRKATSNANQdnqmcslLFQENTFVEQVVNekvkHLEDTLKELESQHSILK 352
Cdd:PRK11281 283 ELEInlqlsQRLLKATEKLNT-------LTQQNLRVKNWLD----RLTQSERNIKEQISVLK 333
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
981-1318 |
7.29e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.99 E-value: 7.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 981 KELDSSRKETQTVREELESLrseKDQLSASMRDLIQAAESYKNLLLEYEKQseqlDVEKERANNFEhhVEDLTRQLRNST 1060
Cdd:PLN03229 422 KKREAVKTPVRELEGEVEKL---KEQILKAKESSSKPSELALNEMIEKLKK----EIDLEYTEAVI--AMGLQERLENLR 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1061 LQCEKINSDNE----DLLARIETLQSNAKL------------LEVQIL-EVQRAKAMVDKELEAEKLQKE--QKIKEhAT 1121
Cdd:PLN03229 493 EEFSKANSQDQlmhpVLMEKIEKLKDEFNKrlsrapnylslkYKLDMLnEFSRAKALSEKKSKAEKLKAEinKKFKE-VM 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1122 TVNELEElQVQLQKEKKQLQKTMQELELVKKDAQQTTLMNMEI-ADYERLMKELNQKLSNKNNKIEDLEQEIKIQ--KQK 1198
Cdd:PLN03229 572 DRPEIKE-KMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIeLELAGVLKSMGLEVIGVTKKNKDTAEQTPPPnlQEK 650
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1199 QETLQEEITSLQSSVQQYEEKNTKIKQLlvktKKELADSKQAEtdhlilQASLKGELEASQQQVEvYKIQLAEITSEKHK 1278
Cdd:PLN03229 651 IESLNEEINKKIERVIRSSDLKSKIELL----KLEVAKASKTP------DVTEKEKIEALEQQIK-QKIAEALNSSELKE 719
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 380818270 1279 IHEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATV 1318
Cdd:PLN03229 720 KFEELEAELAAARETAAESNGSLKNDDDKEEDSKEDGSRV 759
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
210-457 |
7.87e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.07 E-value: 7.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 210 DEKKETVTQLQN-----IIEANSQ-------HYQKNINSLQEELLQLKAIHQEEVKELMCQIEASAKEHETEINKLNELK 277
Cdd:PRK05771 16 SYKDEVLEALHElgvvhIEDLKEElsnerlrKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 278 ENLVKQCEASEKNIQE------KYECELENLRKaTSNANQDNQmcslLFQENTFVEQVVNEKVKHLEDTLKELESQH--- 348
Cdd:PRK05771 96 EKIEKEIKELEEEISEleneikELEQEIERLEP-WGNFDLDLS----LLLGFKYVSVFVGTVPEDKLEELKLESDVEnve 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 349 --SILKDEVTYM-NNLKLKlemdaqhiKDEFFHEREDLEFKINELL---LAKEeqgcVIEKLKSELAGLNKQfcctVEQH 422
Cdd:PRK05771 171 yiSTDKGYVYVVvVVLKEL--------SDEVEEELKKLGFERLELEeegTPSE----LIREIKEELEEIEKE----RESL 234
|
250 260 270
....*....|....*....|....*....|....*
gi 380818270 423 NKEVQSLKEQHQKEISELNETFLSDSEKEKLTLMF 457
Cdd:PRK05771 235 LEELKELAKKYLEELLALYEYLEIELERAEALSKF 269
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
977-1438 |
8.15e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 8.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 977 VKAKKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEkerannfehHVEDLTRQL 1056
Cdd:TIGR00606 322 VDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFE---------RGPFSERQI 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1057 RNS-TLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQV---Q 1132
Cdd:TIGR00606 393 KNFhTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGssdR 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1133 LQKEKKQLQKTMQELELVKKDAQQTTLMNMEI------ADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQE-- 1204
Cdd:TIGR00606 473 ILELDQELRKAERELSKAEKNSLTETLKKEVKslqnekADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQir 552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1205 EITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLilqASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHL- 1283
Cdd:TIGR00606 553 KIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRL---AKLNKELASLEQNKNHINNELESKEEQLSSYEDKLf 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1284 -KTSAEQHQRTLSAYRQRVtalqEESRAAKAEQATVTSEFESYKVRVHNvlkqqKNKSMSQAETEGAKQEREhLEMLIDQ 1362
Cdd:TIGR00606 630 dVCGSQDEESDLERLKEEI----EKSSKQRAMLAGATAVYSQFITQLTD-----ENQSCCPVCQRVFQTEAE-LQEFISD 699
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 380818270 1363 LKIKLQDSQNNLQMNVSELQTLQSEHDTLL---ERHNKMLQETVSKEAELREKLCSIQSENMMMKSEHTQTVSQLTSQN 1438
Cdd:TIGR00606 700 LQSKLRLAPDKLKSTESELKKKEKRRDEMLglaPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIM 778
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
957-1184 |
8.41e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 8.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 957 NLEKEGKekeekinkiklvavKAKKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLD 1036
Cdd:COG4942 31 QLQQEIA--------------ELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1037 VE-KERANNFEHHVEDLTRQLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAmvdkELEAEKLQKEQK 1115
Cdd:COG4942 97 AElEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLA----ELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380818270 1116 IKEHATTVNELEELQVQLQKEKKQLQKTMQELEL-VKKDAQQTTLMNMEIADYERLMKELNQKLSNKNNK 1184
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKeLAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| |
