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NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial isoform 2 precursor [Macaca mulatta]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
77-453
0e+00
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 718.86
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 77 VK N M TLNFGPQHPAAHGVLRL VM EL S GE M V RKC DPHIG L LHRGTEKL I EY K TYLQA L PYFDRLDYVS M M C NE Q AY S LAVE 156
Cdd:PRK06075 4 IR N Y TLNFGPQHPAAHGVLRL IL EL D GE V V VRA DPHIG Y LHRGTEKL A EY R TYLQA I PYFDRLDYVS P M N NE H AY C LAVE 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 157 KLL N I RP P P RAQ W IRVLF G E IT R L L N H IMAVT THALDLGAMT PLF W L F E EREK MFEF YE R V S GARMH A AYIRPGGV HQ DL 236
Cdd:PRK06075 84 KLL G I EV P E RAQ Y IRVLF L E LN R I L S H LLWLG THALDLGAMT VFL W G F R EREK LLDL YE A V T GARMH H AYIRPGGV RR DL 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 237 P L GL MD DI YE F SKN F SL RLD EL E EM LT N NRIW RN R TIDI GVV TA E E AL NY GF S G V MLR G SG IQ WDLRK T QPY D VYD QV DF 316
Cdd:PRK06075 164 P D GL LE DI RD F LDY F PK RLD DY E TL LT D NRIW KQ R LVGV GVV SK E R AL AL GF T G P MLR A SG VA WDLRK S QPY E VYD EL DF 243
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 317 DVPVG SR GDCYDRYL C RVEEMRQSLRII V QCL NKM -- PPG EIK VDD A K VS PP K R A EMKTSME S LIHHFKL Y TEG YQ VP P G 394
Cdd:PRK06075 244 DVPVG KN GDCYDRYL V RVEEMRQSLRII E QCL DRL rp PPG PVM VDD P K IA PP A R L EMKTSME A LIHHFKL V TEG FR VP A G 323
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 380813052 395 AT Y T A I E A PKGEFGVYLVSDG SSR PYR C KI K AP G FAHL AG LD K M SK GHMLADVVAIIG T 453
Cdd:PRK06075 324 EV Y A A V E S PKGEFGVYLVSDG GNK PYR V KI R AP S FAHL QA LD E M CR GHMLADVVAIIG S 382
Name
Accession
Description
Interval
E-value
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
77-453
0e+00
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 718.86
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 77 VK N M TLNFGPQHPAAHGVLRL VM EL S GE M V RKC DPHIG L LHRGTEKL I EY K TYLQA L PYFDRLDYVS M M C NE Q AY S LAVE 156
Cdd:PRK06075 4 IR N Y TLNFGPQHPAAHGVLRL IL EL D GE V V VRA DPHIG Y LHRGTEKL A EY R TYLQA I PYFDRLDYVS P M N NE H AY C LAVE 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 157 KLL N I RP P P RAQ W IRVLF G E IT R L L N H IMAVT THALDLGAMT PLF W L F E EREK MFEF YE R V S GARMH A AYIRPGGV HQ DL 236
Cdd:PRK06075 84 KLL G I EV P E RAQ Y IRVLF L E LN R I L S H LLWLG THALDLGAMT VFL W G F R EREK LLDL YE A V T GARMH H AYIRPGGV RR DL 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 237 P L GL MD DI YE F SKN F SL RLD EL E EM LT N NRIW RN R TIDI GVV TA E E AL NY GF S G V MLR G SG IQ WDLRK T QPY D VYD QV DF 316
Cdd:PRK06075 164 P D GL LE DI RD F LDY F PK RLD DY E TL LT D NRIW KQ R LVGV GVV SK E R AL AL GF T G P MLR A SG VA WDLRK S QPY E VYD EL DF 243
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 317 DVPVG SR GDCYDRYL C RVEEMRQSLRII V QCL NKM -- PPG EIK VDD A K VS PP K R A EMKTSME S LIHHFKL Y TEG YQ VP P G 394
Cdd:PRK06075 244 DVPVG KN GDCYDRYL V RVEEMRQSLRII E QCL DRL rp PPG PVM VDD P K IA PP A R L EMKTSME A LIHHFKL V TEG FR VP A G 323
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 380813052 395 AT Y T A I E A PKGEFGVYLVSDG SSR PYR C KI K AP G FAHL AG LD K M SK GHMLADVVAIIG T 453
Cdd:PRK06075 324 EV Y A A V E S PKGEFGVYLVSDG GNK PYR V KI R AP S FAHL QA LD E M CR GHMLADVVAIIG S 382
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
78-453
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 692.20
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 78 KN M T LN F GPQHP AA HGVLRLV M EL S GE M V RKC DPHIG L LHRG T EKL I E YK TY L Q AL PY F DRLDY V S M M C NE Q AY S LAVEK 157
Cdd:COG0649 5 EE M V LN M GPQHP ST HGVLRLV L EL D GE T V VDA DPHIG Y LHRG F EKL A E NR TY T Q II PY T DRLDY L S P M N NE L AY V LAVEK 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 158 LL N I RP P P RAQ W IRV LFG E IT R LLN H IMAVT T H ALDLGAMTP LFWL F E EREK MFEFY E R V S GARM HAA Y I R P GGV HQ DLP 237
Cdd:COG0649 85 LL G I EV P E RAQ Y IRV ILA E LN R IAS H LLWLG T Y ALDLGAMTP FLYA F R EREK ILDLF E E V T GARM THN Y F R I GGV RR DLP 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 238 L G LMDDIY EF SKN F SL RLDE L E EM LT N NRI WRN RT IDI GV VT AE E A LNY G FS G VM LR G SG IQW DLRK TQ PY DV YD QV DFD 317
Cdd:COG0649 165 D G FLEKVR EF LDY F PK RLDE Y E DL LT G NRI FKA RT KGV GV LS AE D A IAL G VT G PV LR A SG VDY DLRK DE PY SG YD EL DFD 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 318 VPVG SR GDCYDRYL C R V EEMRQSLRII V QCL N K M P P G EIKVD D A K VS PP KRA EMKTSME S LIHHFKL Y TEG YQ VP P G AT Y 397
Cdd:COG0649 245 VPVG TE GDCYDRYL V R M EEMRQSLRII R QCL D K L P E G PVMAK D P K IA PP PKE EMKTSME A LIHHFKL V TEG FK VP A G EV Y 324
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 380813052 398 T A I E A P K GE F G V YLVSDG SSR PYR C KI KA P G FA H L AG L DK M S KGHMLADVVAI I G T 453
Cdd:COG0649 325 A A V E S P R GE L G F YLVSDG GTK PYR V KI RS P S FA N L QA L PE M L KGHMLADVVAI L G S 380
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
78-457
0e+00
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 622.82
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 78 KN M T LN F GPQHP AA HGVLRL VM EL S GE M V RKC DPHIG L LHRGTEKL I E YK TY L Q AL PY F DRLDY V S MMC NE Q AY S LAVEK 157
Cdd:TIGR01962 1 EF M I LN L GPQHP ST HGVLRL IL EL D GE Y V VRA DPHIG Y LHRGTEKL A E NR TY Q Q YI PY T DRLDY L S PFS NE L AY C LAVEK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 158 LL N I RP P P RAQ W IRV LFG E IT R LLN H IMAVT THALDLGAMTP LFWL F E EREK MFEFY E RVS GARMH A AY I R P GGV HQ DLP 237
Cdd:TIGR01962 81 LL G I EV P R RAQ V IRV MLS E LN R ISS H LLFIG THALDLGAMTP FLYA F R EREK ILDLF E AIT GARMH S AY F R I GGV AL DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 238 LGLMDD I Y EF SKN F SL RL DEL E EM L TN NRIW RN RT IDI GVV T A EE AL NY G FS G V MLRGSGI Q WD L RK TQ PY DV YD QV DFD 317
Cdd:TIGR01962 161 ENWLEE I R EF LEQ F PK RL RDY E TL L NE NRIW KQ RT QGV GVV S A KD AL DW G LT G P MLRGSGI D WD I RK SE PY EG YD EY DFD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 318 VPVG SR GDCYDRYL C RV E EMR Q S LR II V QCL N KMPPG E IK V D DA K VS PP KRAE M K TSME S LIHHFKL Y TEG YQ VP P G AT Y 397
Cdd:TIGR01962 241 VPVG GN GDCYDRYL L RV L EMR E S IK II E QCL E KMPPG P IK A D NP K LA PP PKER M L TSME A LIHHFKL V TEG FR VP A G EV Y 320
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 398 TA IE A PKGE F G V Y LV SDG SSR PYR C KI K AP G FAHL AG L DK M SK GH M LAD VV AI I G TRLI V 457
Cdd:TIGR01962 321 VP IE S PKGE L G F Y II SDG GTK PYR L KI R AP S FAHL QA L EA M CV GH Y LAD LI AI L G SIDP V 380
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
194-453
0e+00
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 510.00
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 194 LGAMTP LFWL F E EREK MFEFY ER VS GARM HAA Y I RPGGV HQ DLP L G LMDD I Y EF SKN F SL RLDE L E EM LT N NRI WRN RT I 273
Cdd:pfam00346 1 LGAMTP FLYA F R EREK ILDLF ER IT GARM THS Y F RPGGV AR DLP E G FLEK I R EF LDY F PK RLDE Y E DL LT R NRI FKD RT K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 274 DI GV VT AE E AL NY G FS G V MLR G SG IQ WDLRK TQ PY DV YD QV DFDVPVG SR GDCYDRYL C R V EEMRQSLRII V QCL N K M P P 353
Cdd:pfam00346 81 GV GV LS AE D AL AL G VT G P MLR A SG VP WDLRK DE PY SG YD EL DFDVPVG TE GDCYDRYL V R M EEMRQSLRII R QCL D K L P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 354 G EIKV DD A K VSP P KRA EMKTSME S LIHHFKL Y TEG YQ VP P G AT Y T A I EAPKGE F G V YLVSDG SSR PYR C KI K AP G FA H L A 433
Cdd:pfam00346 161 G PVMA DD P K IAL P PKE EMKTSME A LIHHFKL V TEG FR VP A G EV Y V A V EAPKGE L G F YLVSDG GTK PYR V KI R AP S FA N L Q 240
250 260
....*....|....*....|
gi 380813052 434 G L DK M S KGHMLADVVAIIG T 453
Cdd:pfam00346 241 A L PE M C KGHMLADVVAIIG S 260
Name
Accession
Description
Interval
E-value
PRK06075
PRK06075 NADH-quinone oxidoreductase subunit D;
77-453
0e+00
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain]
Cd Length: 392
Bit Score: 718.86
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 77 VK N M TLNFGPQHPAAHGVLRL VM EL S GE M V RKC DPHIG L LHRGTEKL I EY K TYLQA L PYFDRLDYVS M M C NE Q AY S LAVE 156
Cdd:PRK06075 4 IR N Y TLNFGPQHPAAHGVLRL IL EL D GE V V VRA DPHIG Y LHRGTEKL A EY R TYLQA I PYFDRLDYVS P M N NE H AY C LAVE 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 157 KLL N I RP P P RAQ W IRVLF G E IT R L L N H IMAVT THALDLGAMT PLF W L F E EREK MFEF YE R V S GARMH A AYIRPGGV HQ DL 236
Cdd:PRK06075 84 KLL G I EV P E RAQ Y IRVLF L E LN R I L S H LLWLG THALDLGAMT VFL W G F R EREK LLDL YE A V T GARMH H AYIRPGGV RR DL 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 237 P L GL MD DI YE F SKN F SL RLD EL E EM LT N NRIW RN R TIDI GVV TA E E AL NY GF S G V MLR G SG IQ WDLRK T QPY D VYD QV DF 316
Cdd:PRK06075 164 P D GL LE DI RD F LDY F PK RLD DY E TL LT D NRIW KQ R LVGV GVV SK E R AL AL GF T G P MLR A SG VA WDLRK S QPY E VYD EL DF 243
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 317 DVPVG SR GDCYDRYL C RVEEMRQSLRII V QCL NKM -- PPG EIK VDD A K VS PP K R A EMKTSME S LIHHFKL Y TEG YQ VP P G 394
Cdd:PRK06075 244 DVPVG KN GDCYDRYL V RVEEMRQSLRII E QCL DRL rp PPG PVM VDD P K IA PP A R L EMKTSME A LIHHFKL V TEG FR VP A G 323
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 380813052 395 AT Y T A I E A PKGEFGVYLVSDG SSR PYR C KI K AP G FAHL AG LD K M SK GHMLADVVAIIG T 453
Cdd:PRK06075 324 EV Y A A V E S PKGEFGVYLVSDG GNK PYR V KI R AP S FAHL QA LD E M CR GHMLADVVAIIG S 382
NuoD
COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
78-453
0e+00
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain]
Cd Length: 390
Bit Score: 692.20
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 78 KN M T LN F GPQHP AA HGVLRLV M EL S GE M V RKC DPHIG L LHRG T EKL I E YK TY L Q AL PY F DRLDY V S M M C NE Q AY S LAVEK 157
Cdd:COG0649 5 EE M V LN M GPQHP ST HGVLRLV L EL D GE T V VDA DPHIG Y LHRG F EKL A E NR TY T Q II PY T DRLDY L S P M N NE L AY V LAVEK 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 158 LL N I RP P P RAQ W IRV LFG E IT R LLN H IMAVT T H ALDLGAMTP LFWL F E EREK MFEFY E R V S GARM HAA Y I R P GGV HQ DLP 237
Cdd:COG0649 85 LL G I EV P E RAQ Y IRV ILA E LN R IAS H LLWLG T Y ALDLGAMTP FLYA F R EREK ILDLF E E V T GARM THN Y F R I GGV RR DLP 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 238 L G LMDDIY EF SKN F SL RLDE L E EM LT N NRI WRN RT IDI GV VT AE E A LNY G FS G VM LR G SG IQW DLRK TQ PY DV YD QV DFD 317
Cdd:COG0649 165 D G FLEKVR EF LDY F PK RLDE Y E DL LT G NRI FKA RT KGV GV LS AE D A IAL G VT G PV LR A SG VDY DLRK DE PY SG YD EL DFD 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 318 VPVG SR GDCYDRYL C R V EEMRQSLRII V QCL N K M P P G EIKVD D A K VS PP KRA EMKTSME S LIHHFKL Y TEG YQ VP P G AT Y 397
Cdd:COG0649 245 VPVG TE GDCYDRYL V R M EEMRQSLRII R QCL D K L P E G PVMAK D P K IA PP PKE EMKTSME A LIHHFKL V TEG FK VP A G EV Y 324
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 380813052 398 T A I E A P K GE F G V YLVSDG SSR PYR C KI KA P G FA H L AG L DK M S KGHMLADVVAI I G T 453
Cdd:COG0649 325 A A V E S P R GE L G F YLVSDG GTK PYR V KI RS P S FA N L QA L PE M L KGHMLADVVAI L G S 380
NuoD
TIGR01962 NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
78-457
0e+00
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898
Cd Length: 386
Bit Score: 622.82
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 78 KN M T LN F GPQHP AA HGVLRL VM EL S GE M V RKC DPHIG L LHRGTEKL I E YK TY L Q AL PY F DRLDY V S MMC NE Q AY S LAVEK 157
Cdd:TIGR01962 1 EF M I LN L GPQHP ST HGVLRL IL EL D GE Y V VRA DPHIG Y LHRGTEKL A E NR TY Q Q YI PY T DRLDY L S PFS NE L AY C LAVEK 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 158 LL N I RP P P RAQ W IRV LFG E IT R LLN H IMAVT THALDLGAMTP LFWL F E EREK MFEFY E RVS GARMH A AY I R P GGV HQ DLP 237
Cdd:TIGR01962 81 LL G I EV P R RAQ V IRV MLS E LN R ISS H LLFIG THALDLGAMTP FLYA F R EREK ILDLF E AIT GARMH S AY F R I GGV AL DLP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 238 LGLMDD I Y EF SKN F SL RL DEL E EM L TN NRIW RN RT IDI GVV T A EE AL NY G FS G V MLRGSGI Q WD L RK TQ PY DV YD QV DFD 317
Cdd:TIGR01962 161 ENWLEE I R EF LEQ F PK RL RDY E TL L NE NRIW KQ RT QGV GVV S A KD AL DW G LT G P MLRGSGI D WD I RK SE PY EG YD EY DFD 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 318 VPVG SR GDCYDRYL C RV E EMR Q S LR II V QCL N KMPPG E IK V D DA K VS PP KRAE M K TSME S LIHHFKL Y TEG YQ VP P G AT Y 397
Cdd:TIGR01962 241 VPVG GN GDCYDRYL L RV L EMR E S IK II E QCL E KMPPG P IK A D NP K LA PP PKER M L TSME A LIHHFKL V TEG FR VP A G EV Y 320
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 398 TA IE A PKGE F G V Y LV SDG SSR PYR C KI K AP G FAHL AG L DK M SK GH M LAD VV AI I G TRLI V 457
Cdd:TIGR01962 321 VP IE S PKGE L G F Y II SDG GTK PYR L KI R AP S FAHL QA L EA M CV GH Y LAD LI AI L G SIDP V 380
Complex1_49kDa
pfam00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
194-453
0e+00
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772
Cd Length: 270
Bit Score: 510.00
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 194 LGAMTP LFWL F E EREK MFEFY ER VS GARM HAA Y I RPGGV HQ DLP L G LMDD I Y EF SKN F SL RLDE L E EM LT N NRI WRN RT I 273
Cdd:pfam00346 1 LGAMTP FLYA F R EREK ILDLF ER IT GARM THS Y F RPGGV AR DLP E G FLEK I R EF LDY F PK RLDE Y E DL LT R NRI FKD RT K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 274 DI GV VT AE E AL NY G FS G V MLR G SG IQ WDLRK TQ PY DV YD QV DFDVPVG SR GDCYDRYL C R V EEMRQSLRII V QCL N K M P P 353
Cdd:pfam00346 81 GV GV LS AE D AL AL G VT G P MLR A SG VP WDLRK DE PY SG YD EL DFDVPVG TE GDCYDRYL V R M EEMRQSLRII R QCL D K L P E 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 354 G EIKV DD A K VSP P KRA EMKTSME S LIHHFKL Y TEG YQ VP P G AT Y T A I EAPKGE F G V YLVSDG SSR PYR C KI K AP G FA H L A 433
Cdd:pfam00346 161 G PVMA DD P K IAL P PKE EMKTSME A LIHHFKL V TEG FR VP A G EV Y V A V EAPKGE L G F YLVSDG GTK PYR V KI R AP S FA N L Q 240
250 260
....*....|....*....|
gi 380813052 434 G L DK M S KGHMLADVVAIIG T 453
Cdd:pfam00346 241 A L PE M C KGHMLADVVAIIG S 260
PRK12322
PRK12322 NADH-quinone oxidoreductase subunit D;
80-457
2.27e-146
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain]
Cd Length: 366
Bit Score: 422.19
E-value: 2.27e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 80 M T LN F GPQHP AA HGV L RLV MELS GE MVRKCD P H IG L LHRGTEKL I E YKT Y L Q AL PY F DR L DY V S M M C N EQA Y SL AVE KLL 159
Cdd:PRK12322 7 M L LN V GPQHP ST HGV F RLV LKID GE IIVEAT P V IG Y LHRGTEKL A E SLQ Y T Q II PY T DR M DY L S A M T N NYV Y CH AVE TMM 86
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 160 NIRP P P RA QWI RV LFG E IT R LLN H IMAVT T HA LD L GA MT P LFWL F E ERE KMFEFYERVS GAR MHAA Y I R P GGV HQ D L P L G 239
Cdd:PRK12322 87 GLEV P E RA EYL RV IAM E LG R IAS H LVWWG T YL LD I GA VS P FLYA F R ERE MIINLLNELC GAR LTFN Y M R I GGV KW D A P D G 166
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 240 LMDDIY EF SKNFSLR L DELEEML T N N R I WR NR TIDI G VVT AEEA LN Y GF SGV M LR GS G IQ WDLRK TQ PY DV YD QV DFD V P 319
Cdd:PRK12322 167 WIEKVK EF VPYMREQ L AGYHDLV T G N E I FL NR VKGV G IYS AEEA IS Y SL SGV N LR CT G VN WDLRK DE PY SI YD RF DFD I P 246
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 320 VGS R GDC Y DRY L CR VE E MR QSL R II V Q CLNKM P P - G EIK vdd AKV sp PK raemktsmes L I hhfklytegy QV P P G AT Y T 398
Cdd:PRK12322 247 VGS V GDC W DRY V CR MQ E IE QSL K II E Q AVEQF P K e G PVL --- AKV -- PK ---------- I I ---------- KA P K G EA Y V 301
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 380813052 399 A IE A P K GE F G V Y LV SDG SSR PYR C K IKA P G F AH L AG L D K MS KG HML A DVV AI I G TRL IV 457
Cdd:PRK12322 302 R IE S P R GE I G C Y IA SDG KKK PYR L K FRR P S F YN L QI L P K LL KG ENI A NLI AI L G SID IV 360
PRK13292
PRK13292 NADH-quinone oxidoreductase subunit B/C/D;
62-453
1.12e-140
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain]
Cd Length: 788
Bit Score: 421.88
E-value: 1.12e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 62 K P P P WN D M -- DPPKD T MV knmt LN F GPQHP AA HG VL R L V ME L S GE MVRKC D PH IG LL HRG T EK LI E YKTYL Q AL PY F DR L 139
Cdd:PRK13292 389 Q P L P AG D F fd RVDEE T LI ---- LN L GPQHP GT HG II R F V LK L D GE EIVDM D SD IG YH HRG A EK IG E RQHWN Q FI PY T DR I 464
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 140 DY VSMMC N EQ AY SLA VE K L LN I RP P P RA QW IRV LFG E IT R LL NH IMAVT T H A L D L GAMTP L F WL F EE REK M F EFY E RVS G 219
Cdd:PRK13292 465 DY LAGVQ N NL AY VNS VE T L CG I EV P D RA IY IRV MLS E LF R IA NH LVWLG T F A A D V GAMTP V F YT F TD REK I F DIV E MIT G 544
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 220 A RMH A A YI R P GGV HQ DLP L G LMDDIYE F SKN F SL RL D E L E EM LT N N R I WRN R TIDI GV V T AE EA LNY G F SG VM LR GS G IQ 299
Cdd:PRK13292 545 G RMH P A WF R I GGV AE DLP E G WKEAVEA F LRW F PG RL K E Y E DL LT G N P I FKA R LKGV GV I T RD EA VEW G I SG PN LR AC G LA 624
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 300 WDLRK TQ PY DV YD QV DF D VP VGSR GDCY D RYL C R V EEMRQSLRI IV Q CLNK MP P G EIKV DD AKVSP P KRAEMKTSM ESLI 379
Cdd:PRK13292 625 WDLRK KM PY GG YD RF DF E VP TAEG GDCY A RYL V R M EEMRQSLRI VR Q AAAG MP G G RWIS DD YRYVL P QKRDTLKDI ESLI 704
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 380813052 380 HHF KLY T E G YQV P P G AT Y T AIEAPKGE F G VYL VSDG SSRP YR CK I KA P G F A H LAG L DKM S K G HML AD VV AIIG T 453
Cdd:PRK13292 705 HHF VNV T R G PAP P K G EC Y A AIEAPKGE N G YFV VSDG LNIA YR MR I RT P S F P H IQA L PLL S R G WLV AD FL AIIG S 778
PRK11742
PRK11742 bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
80-453
3.88e-140
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain]
Cd Length: 575
Bit Score: 413.55
E-value: 3.88e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 80 M T LN F GP Q HP A AHG VL R L V ME L S GE MVRK C D P H IG LL HRG T EK LI E YKTYLQAL PY F DR L DY VSMMC NE QA Y S LAVEKL L 159
Cdd:PRK11742 192 M F LN L GP N HP S AHG AF R I V LQ L D GE EIVD C V P D IG YH HRG A EK MG E RQSWHSYI PY T DR I DY LGGCM NE MP Y V LAVEKL A 271
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 160 N I RP P P R AQW IRV LFG E IT R LLN H IMAVT T HAL D L GAMTP L F WL F EE R E K MFEFY E RVS G A RMH A A YI R P GGV HQ DLP L G 239
Cdd:PRK11742 272 G I TV P D R VNV IRV MLS E LF R INS H LLYIG T FIQ D V GAMTP V F FA F TD R Q K IYDVI E AIT G F RMH P A WF R I GGV AH DLP R G 351
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 240 LMDDIY EF SKNFSL RLDE L E EMLTN N R I WRN RT IDIGVVT A E EAL NY G FS G VM LR GS GI QW D L RK TQ PY DV Y DQV DF D VP 319
Cdd:PRK11742 352 WDRLLR EF LDWMPK RLDE Y E KAALR N S I LKG RT QGVAAYN A K EAL EW G VT G AG LR AT GI DF D V RK AR PY SG Y ENF DF E VP 431
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 320 VG SR GDCYDR YLCR VEEMRQSLRII V QCL NK MP P G EI K V D DAKVS PP KRAEMKTSM E S LI H HF KLYTE G YQV P PGATYTA 399
Cdd:PRK11742 432 VG GN GDCYDR VMVK VEEMRQSLRII E QCL DN MP E G PF K A D HPLTT PP PKERTLQHI E T LI T HF LQVSW G PVM P ANESFQM 511
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 380813052 400 IEA P KG EFGV YL V SDGS SRP YR CK I KA P G FAHL AGLDKMSK G HMLA D VVAII G T 453
Cdd:PRK11742 512 IEA T KG INSY YL T SDGS TMS YR TR I RT P S FAHL QQIPSVIR G SLVS D LIVYL G S 565
PRK07415
PRK07415 NAD(P)H-quinone oxidoreductase subunit H; Validated
74-453
1.00e-114
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain]
Cd Length: 394
Bit Score: 342.49
E-value: 1.00e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 74 D T MVKN M T LNFGP Q HP AA HGVLRL VME L S GE M V RK C D P H IG L LHRG T EK LI E YK T YLQAL PY FD R L DY VSM M C NE QAYSL 153
Cdd:PRK07415 5 E T RTEP M V LNFGP H HP SM HGVLRL IVT L D GE D V VD C E P V IG Y LHRG M EK IA E NR T NVMYV PY VS R W DY AAG M F NE AITVN 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 154 A V EKL L NI RP P P RA QW IRV LFG E IT R LL NH IMAVTTHAL D L GA M TP L F WL F E ERE KMFEFY E RVS G A R M - HAA Y I R P GGV 232
Cdd:PRK07415 85 A P EKL A NI PV P K RA SY IRV IML E LN R IA NH LLWLGPFLA D V GA Q TP F F YI F R ERE MIYDLW E AAT G Q R L i NNN Y F R I GGV 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 233 HQ DLP L G LMDDIYE F SKN F SLRL DE L E EML TNN R I W R N R TIDI G VVTA EEA L N Y G F SG V MLR G SG IQ WDLRK TQP Y DV YD 312
Cdd:PRK07415 165 AA DLP Y G WLEKCLD F CDY F GPKI DE Y E KLI TNN P I F R R R IEGL G TISR EEA I N W G L SG P MLR A SG VK WDLRK VDH Y EC YD 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 313 QV D F DV PVGSR GDC YD RY LC R V EEMR Q S LR II V Q CLNKM P P G EIKVDD AK vspp KR AE M K T S - MESLIHHF -- K LYTEGY 389
Cdd:PRK07415 245 DF D W DV AWETE GDC LA RY RV R I EEMR E S VK II R Q ACKGI P G G PYENLE AK ---- RM AE G K K S e WNGFDYQY va K KVAPTF 320
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 380813052 390 QV P P G AT Y TAI E AP KGE F G VYLVSDGSSR P Y R C KI K A PG F AH L AG L DKMS KG HML AD VV AI I G T 453
Cdd:PRK07415 321 KI P N G EL Y VRL E SG KGE L G IFIQGNNDVT P W R W KI R A AD F NN L QI L PHLL KG AKV AD IM AI L G S 384
ndhH
CHL00017 NADH dehydrogenase subunit 7
73-453
3.16e-105
NADH dehydrogenase subunit 7
Pssm-ID: 176960
Cd Length: 393
Bit Score: 318.18
E-value: 3.16e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 73 KD T M VK NM tlnf GP Q HP AA HGVLRL VME L S GE M V RK C D P HI G L LHRG T EK LI E YK T YL Q A LPY FD R L DY VSM M CN E QAYS 152
Cdd:CHL00017 8 KD L M IV NM ---- GP H HP SM HGVLRL IVT L D GE D V ID C E P IL G Y LHRG M EK IA E NR T II Q Y LPY VT R W DY LAT M FT E AITV 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 153 L A V E K L L NI RP P P RA QW IRV LFG E IT R LLN H IMAVTTHAL D L GA M TP L F WL F E ERE KMFEFY E RVS G A RM HAA Y I R P GGV 232
Cdd:CHL00017 84 N A P E Q L G NI QV P K RA SY IRV IML E LS R IAS H LLWLGPFMA D I GA Q TP F F YI F R ERE LIYDLF E AAT G M RM MHN Y F R I GGV 163
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 233 HQ DLP L G LM D DIYE F SKN F SLRLD E LEEML T N N R I WRN R TIDI G VVTA EEA L N Y G F SG V MLR G SGIQWDLRK TQP Y DV YD 312
Cdd:CHL00017 164 AA DLP Y G WI D KCLD F CDY F LTGVA E YQKLI T R N P I FLE R VEGV G IIGG EEA I N W G L SG P MLR A SGIQWDLRK VDH Y EC YD 243
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 313 QV D FD V PVGSR GD CYD RYL C R VE EM RQ S LR II V Q C L NKM P P G EIKVDD A KVSPPKRAEMKTSM E sli HH F -- K LYTEGYQ 390
Cdd:CHL00017 244 EF D WE V QWQKE GD SLA RYL V R IG EM TE S IK II Q Q A L EGI P G G PYENLE A RRFDREKDSEWNDF E --- YR F is K KPSPTFE 320
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 380813052 391 VPPGAT Y TAI EAPKGE F G VY L VS D G S SR P Y R C KI KA PGF AH L AG L DKMS K GHM LAD VVA I I G T 453
Cdd:CHL00017 321 LSKQEL Y VRV EAPKGE L G IF L IG D D S VF P W R W KI RP PGF IN L QI L PQLV K RMK LAD IMT I L G S 383
HycE2
COG3261 Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
12-453
4.62e-93
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
Pssm-ID: 442492 [Multi-domain]
Cd Length: 479
Bit Score: 289.56
E-value: 4.62e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 12 GV A AQVLRPGAGVRLPIQPSRGV R QWQ PD VEWA qqfggav MY P SKETAHWK P PPWNDMD P PKDT M V ---- KNMTLNF GP Q 87
Cdd:COG3261 58 AA A RRERARERLGGEEGGGPPRR R LLL PD GWPP ------- LP P PPLRPPPP P RGPPPPP P EEPE M K vege GVHEIPV GP V 130
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 88 H PAAH -- G VL R LVM E ls GE MVRKCDPHI G LL HRG T EKL I E YKT Y L QAL PYFD R ldy VSMM C --- NEQ AY SL AVEK LLN I R 162
Cdd:COG3261 131 H AGLI ep G HF R FSV E -- GE RILDLEIRL G YV HRG I EKL A E GRD Y E QAL YLAE R --- ICGI C sva HAL AY CQ AVEK AAG I E 205
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 163 P PPRAQ WI RV LFG E IT R LLN H IMAVTTH A L D L G AM T PLFWLFEE RE KMFEFY E RVS G A R MHAAYIR PGGV HQ DL PLGLMD 242
Cdd:COG3261 206 V PPRAQ YL RV ILL E LE R IHS H LLDLGAL A N D V G FE T LFMQCWRL RE RVLDLN E ALT G N R VLRGINV PGGV RR DL DPEQLK 285
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 243 D I Y E FSKNFSLRLD EL EEMLT N NRIWRN R TIDI GV VTA E E A LNY G FS G VML R G SG IQW D L R KTQ PY DV YD QV DF D V PVGS 322
Cdd:COG3261 286 A I L E RLDELEEEVK EL VDLFL N DPSVLD R LVGT GV LSK E D A RDL G AV G PVA R A SG VDR D V R RDH PY AA YD EL DF K V VTET 365
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 380813052 323 R GD C Y D R Y L C R V EE MRQ SL RI I V Q C L N K M P P G E I K V ddakvs P PKRA emktsmeslihhfklytegyq V P P G ATYTAI EA 402
Cdd:COG3261 366 E GD V Y A R A L V R L EE IFE SL DL I R Q A L E K L P E G P I R V ------ P VPGL --------------------- P P D G EGLGRV EA 418
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 380813052 403 P K GE FGV Y LVS DG SS R PY R C KI KA P G FA HLAG L DKMSK G HML AD VVA I IGT 453
Cdd:COG3261 419 P R GE LVH Y VRT DG DG R LE R V KI RT P S FA NWPA L ELALR G NIV AD FPL I NKS 469
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
