|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
1-322 |
7.24e-71 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 235.51 E-value: 7.24e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 1 MINGFVKKGFQEEALVWFREMQISgVKPDYVAIIAALNACTNLG*LSFGLWVHRYVMNQDFKNNVRVSNS*IDLYCRCGC 80
Cdd:PLN03077 461 IIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 81 VEFAREVFDKMEKrTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVG*VEEGLRYFQIMKCD 160
Cdd:PLN03077 540 MNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 161 YRISPRIEHYG*LVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAAC*NHgNNTVLAERLMKHLSDLNVKSHSNYVIL 240
Cdd:PLN03077 619 YSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH-RHVELGELAAQHIFELDPNSVGYYILL 697
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 241 SNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDHTHVFMAGDGAHVETVYIRDVL-----------LLISSDSRL 309
Cdd:PLN03077 698 CNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLegfyekmkasgLAGSESSSM 777
|
330
....*....|...
gi 347954506 310 EGcaVEALADELL 322
Cdd:PLN03077 778 DE--IEVSKDDIF 788
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
214-275 |
2.40e-11 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 58.32 E-value: 2.40e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 347954506 214 NNTVLAERLMKHLSDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIE 275
Cdd:pfam20431 2 SNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
97-131 |
1.18e-04 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 38.59 E-value: 1.18e-04
10 20 30
....*....|....*....|....*....|....*
gi 347954506 97 VSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDA 131
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
166-274 |
4.16e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 38.17 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 166 RIEHYG*LVDLYSRAGRLEDALKLVQSM-PMKPNEVVIGSLLAAC*NHGNNTVLAERLMKHLSDLNVKSHSNYVILSNMY 244
Cdd:COG2956 109 DAEALRLLAEIYEQEGDWEKAIEVLERLlKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELY 188
|
90 100 110
....*....|....*....|....*....|
gi 347954506 245 AADGKWEGASKMRRKMkglgLKKQPGFSSI 274
Cdd:COG2956 189 LEQGDYEEAIAALERA----LEQDPDYLPA 214
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
1-322 |
7.24e-71 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 235.51 E-value: 7.24e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 1 MINGFVKKGFQEEALVWFREMQISgVKPDYVAIIAALNACTNLG*LSFGLWVHRYVMNQDFKNNVRVSNS*IDLYCRCGC 80
Cdd:PLN03077 461 IIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 81 VEFAREVFDKMEKrTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVG*VEEGLRYFQIMKCD 160
Cdd:PLN03077 540 MNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 161 YRISPRIEHYG*LVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAAC*NHgNNTVLAERLMKHLSDLNVKSHSNYVIL 240
Cdd:PLN03077 619 YSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH-RHVELGELAAQHIFELDPNSVGYYILL 697
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 241 SNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDHTHVFMAGDGAHVETVYIRDVL-----------LLISSDSRL 309
Cdd:PLN03077 698 CNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLegfyekmkasgLAGSESSSM 777
|
330
....*....|...
gi 347954506 310 EGcaVEALADELL 322
Cdd:PLN03077 778 DE--IEVSKDDIF 788
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
1-290 |
2.13e-57 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 196.63 E-value: 2.13e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 1 MINGFVKKGFQEEALVWFREMQISGVKPDYVAIIAALNACTNLG*LSFGLWVHRYVMNQDFKNNVRVSNS*IDLYCRCGC 80
Cdd:PLN03081 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 81 VEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVG*VEEGLRYFQIMKCD 160
Cdd:PLN03081 376 MEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 161 YRISPRIEHYG*LVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAAC*NHGN---NTVLAERLMKhlsdLNVKSHSNY 237
Cdd:PLN03081 456 HRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNlelGRLAAEKLYG----MGPEKLNNY 531
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 347954506 238 VILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDHTHVFMAGDGAH 290
Cdd:PLN03081 532 VVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLH 584
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
1-245 |
7.86e-30 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 119.95 E-value: 7.86e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 1 MINGFVKKGFQEEALVWFREMQISGVKPDYVAIIAALNACTNLG*LSFGLWVHRYVMNQDFKNNVRVSNS*IDLYCRCGC 80
Cdd:PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 81 VEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVG*VEEGLR-YFQIMKC 159
Cdd:PLN03077 238 VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREmHGYVVKT 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 160 DYRISprIEHYG*LVDLYSRAGRLEDALKLVQSMPMK----------------------------------PNEVVIGSL 205
Cdd:PLN03077 318 GFAVD--VSVCNSLIQMYLSLGSWGEAEKVFSRMETKdavswtamisgyeknglpdkaletyalmeqdnvsPDEITIASV 395
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 347954506 206 LAAC*NHGNNTV------LAERlmkhlsdlnvKSHSNYVILSN----MYA 245
Cdd:PLN03077 396 LSACACLGDLDVgvklheLAER----------KGLISYVVVANalieMYS 435
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
2-213 |
1.90e-18 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 86.08 E-value: 1.90e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 2 INGFVKKGFQEEALVWFREMQISG-VKPDYVAIIAALNACTNLG*LSFGLWVHRYVMNQDFKNNVRVSNS*IDLYCRCGC 80
Cdd:PLN03081 94 IEKLVACGRHREALELFEILEAGCpFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGM 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 81 VEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVG*VEEGLryfQIMKCD 160
Cdd:PLN03081 174 LIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ---QLHCCV 250
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 347954506 161 YRISPRIEHY--G*LVDLYSRAGRLEDALKLVQSMPMKpNEVVIGSLLAAC*NHG 213
Cdd:PLN03081 251 LKTGVVGDTFvsCALIDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHG 304
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
2-260 |
6.38e-15 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 75.66 E-value: 6.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 2 INGFVKKGFQEEALVWFREMQISGVKPDYVAIIAALNACTNLG*LSFGLWVHRYVMNQDFKNNVRVSNS*IDLYCRCGCV 81
Cdd:PLN03077 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGEL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 82 EFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVG*VEEGlRYFQIMKCDY 161
Cdd:PLN03077 138 VHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG-REVHAHVVRF 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 162 RISPRIEHYG*LVDLYSRAGRLEDALKLVQSMPMK----------------------------------PNEVVIGSLLA 207
Cdd:PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRdciswnamisgyfengecleglelfftmrelsvdPDLMTITSVIS 296
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 347954506 208 AC*NHGNntvlaERLMKHLSDLNVKSH-----SNYVILSNMYAADGKWEGASKMRRKM 260
Cdd:PLN03077 297 ACELLGD-----ERLGREMHGYVVKTGfavdvSVCNSLIQMYLSLGSWGEAEKVFSRM 349
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
214-275 |
2.40e-11 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 58.32 E-value: 2.40e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 347954506 214 NNTVLAERLMKHLSDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIE 275
Cdd:pfam20431 2 SNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
26-209 |
3.79e-10 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 61.05 E-value: 3.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 26 VKPDYVAIIAALNACTNLG*LSFGLWVHRYVMNQDFKNNVRVSNS*IDLYCRCGCVEFAREVFDKMEKRTVVS---WNSV 102
Cdd:PLN03218 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPdevFFSA 654
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 103 IVGFAAN-GNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVG*VEEGLRYFQIMKcDYRISPRIEHYG*LVDLYSRAG 181
Cdd:PLN03218 655 LVDVAGHaGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK-SIKLRPTVSTMNALITALCEGN 733
|
170 180 190
....*....|....*....|....*....|.
gi 347954506 182 RLEDALKLVQSMP---MKPNEVVIGSLLAAC 209
Cdd:PLN03218 734 QLPKALEVLSEMKrlgLCPNTITYSILLVAS 764
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
18-214 |
5.37e-10 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 60.66 E-value: 5.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 18 FREMQISGVKPDYVAIIAALNACTNLG*LSFGLWVHRYVMNQDFKNNVRVSNS*IDLYCRCGCVEFAREVFDKMEKRTV- 96
Cdd:PLN03218 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHp 574
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 97 -----VSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVG*VEEGLRYFQIMKCDyRISPRIEHYG 171
Cdd:PLN03218 575 idpdhITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFS 653
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 347954506 172 *LVDLYSRAGRLEDALKLVQSMP---MKPNEVVIGSLLAAC*NHGN 214
Cdd:PLN03218 654 ALVDVAGHAGDLDKAFEILQDARkqgIKLGTVSYSSLMGACSNAKN 699
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
37-285 |
3.69e-08 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 54.88 E-value: 3.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 37 LNACTNLG*LSFGLWVHRYVMNQDFKNNVRVSNS*IDLYCRCGCVEFAREVFDKME----KRTVVSWNSVIVGFAANGNA 112
Cdd:PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVnagvEANVHTFGALIDGCARAGQV 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 113 HESLVYFRKMQEKGFKPDAVTFTGALTACSHVG*VEeglRYFQImkcdyrispriehyg*LVDLYSragrledalklvQS 192
Cdd:PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD---RAFDV----------------LAEMKA------------ET 572
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 193 MPMKPNEVVIGSLLAAC*NHGNntvlAER---LMKHLSDLNVK-SHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQ 268
Cdd:PLN03218 573 HPIDPDHITVGALMKACANAGQ----VDRakeVYQMIHEYNIKgTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
|
250
....*....|....*..
gi 347954506 269 PGFSSIEIDDHTHVFMA 285
Cdd:PLN03218 649 EVFFSALVDVAGHAGDL 665
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
94-143 |
1.20e-07 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 47.74 E-value: 1.20e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 347954506 94 RTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSH 143
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
1-229 |
1.67e-07 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 52.96 E-value: 1.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 1 MINGFVKKGFQEEALVWFREMQISGVKPDYVAIIAALNACTNLG*L--SFGLWVHRYVMNQDFKNNVRVSNS*IDLYCRC 78
Cdd:PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVdrAFDVLAEMKAETHPIDPDHITVGALMKACANA 592
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 79 GCVEFAREVFDKME----KRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVG*VEEGLRYF 154
Cdd:PLN03218 593 GQVDRAKEVYQMIHeyniKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 347954506 155 QIMKCDyRISPRIEHYG*LVDLYSRAGRLEDALKL---VQSMPMKPNEVVIGSLLAA-C*nHGNNTvlaERLMKHLSDL 229
Cdd:PLN03218 673 QDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELyedIKSIKLRPTVSTMNALITAlC--EGNQL---PKALEVLSEM 745
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
119-177 |
4.35e-05 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 40.80 E-value: 4.35e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 347954506 119 FRKMQEKGFKPDAVTFTGALTACSHVG*VEEGLRYFQIMKCDyRISPRIEHYG*LVDLY 177
Cdd:pfam13812 3 LREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKK-GIKPTLDTYNAILGVI 60
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
97-131 |
1.18e-04 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 38.59 E-value: 1.18e-04
10 20 30
....*....|....*....|....*....|....*
gi 347954506 97 VSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDA 131
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
97-127 |
3.48e-04 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 37.44 E-value: 3.48e-04
10 20 30
....*....|....*....|....*....|.
gi 347954506 97 VSWNSVIVGFAANGNAHESLVYFRKMQEKGF 127
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
1-37 |
3.63e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 35.03 E-value: 3.63e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 347954506 1 MINGFVKKGFQEEALVWFREMQISGVKPD---YVAIIAAL 37
Cdd:pfam13041 9 LINGYCKKGKVEEAFKLFNEMKKRGVKPNvytYTILINGL 48
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
166-274 |
4.16e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 38.17 E-value: 4.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954506 166 RIEHYG*LVDLYSRAGRLEDALKLVQSM-PMKPNEVVIGSLLAAC*NHGNNTVLAERLMKHLSDLNVKSHSNYVILSNMY 244
Cdd:COG2956 109 DAEALRLLAEIYEQEGDWEKAIEVLERLlKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELY 188
|
90 100 110
....*....|....*....|....*....|
gi 347954506 245 AADGKWEGASKMRRKMkglgLKKQPGFSSI 274
Cdd:COG2956 189 LEQGDYEEAIAALERA----LEQDPDYLPA 214
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
69-107 |
4.47e-03 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 34.65 E-value: 4.47e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 347954506 69 NS*IDLYCRCGCVEFAREVFDKMEKR----TVVSWNSVIVGFA 107
Cdd:pfam13041 7 NTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGLC 49
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
87-141 |
6.83e-03 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 34.64 E-value: 6.83e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 347954506 87 VFDKMEKR----TVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTAC 141
Cdd:pfam13812 2 ILREMVRDgiqlNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
69-94 |
7.12e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 33.59 E-value: 7.12e-03
|
| |
