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Conserved domains on  [gi|347954488|gb|AEP33744|]
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chloroplast biogenesis 19, partial [Aethionema grandiflorum]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000585)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
 8-412 5.08e-93

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 297.92  E-value: 5.08e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488   8 MRLAGFEPNHITFIALISGCGDFptGSETLGDLLHGYACKLGLDrTHVMVGTAILGMYSKRCRFGKARCVFDYMEDKNSV 87
Cdd:PLN03077 279 MRELSVDPDLMTITSVISACELL--GDERLGREMHGYVVKTGFA-VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488  88 TWNTMI----------------------------------------------------------------------DAYM 97
Cdd:PLN03077 356 SWTAMIsgyeknglpdkaletyalmeqdnvspdeitiasvlsacaclgdldvgvklhelaerkglisyvvvanaliEMYS 435

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488  98 RSGKVDRAVKLFDEMPDPDLISWTAMINGFVKKGFHEEALVWFREMQISgVKPDYVAIIAALAACTNLGALSFGLWVHRY 177
Cdd:PLN03077 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAH 514

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 178 VLSQDFKNNVRVNNSLIDLYCRCGCVEFAREVFDKMEKrTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNPDAVTFT 257
Cdd:PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 258 GALTACSHVGLVEEGIQYFQTMKRDYKISPRIEHYGCLVDLYSRAGRLEDALKLVQSMSMKPNEVVIGSLLAACRTHgNN 337
Cdd:PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH-RH 672

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 347954488 338 TELAERLMKHLSEMNVKGHSNYVILSNMYAADGKWEGA*KMRRKMKGLGLKKQPGFSSIEIDDHTHVFMAGDSAH 412
Cdd:PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESH 747
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 8-412 5.08e-93

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 297.92  E-value: 5.08e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488   8 MRLAGFEPNHITFIALISGCGDFptGSETLGDLLHGYACKLGLDrTHVMVGTAILGMYSKRCRFGKARCVFDYMEDKNSV 87
Cdd:PLN03077 279 MRELSVDPDLMTITSVISACELL--GDERLGREMHGYVVKTGFA-VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488  88 TWNTMI----------------------------------------------------------------------DAYM 97
Cdd:PLN03077 356 SWTAMIsgyeknglpdkaletyalmeqdnvspdeitiasvlsacaclgdldvgvklhelaerkglisyvvvanaliEMYS 435

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488  98 RSGKVDRAVKLFDEMPDPDLISWTAMINGFVKKGFHEEALVWFREMQISgVKPDYVAIIAALAACTNLGALSFGLWVHRY 177
Cdd:PLN03077 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAH 514

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 178 VLSQDFKNNVRVNNSLIDLYCRCGCVEFAREVFDKMEKrTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNPDAVTFT 257
Cdd:PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 258 GALTACSHVGLVEEGIQYFQTMKRDYKISPRIEHYGCLVDLYSRAGRLEDALKLVQSMSMKPNEVVIGSLLAACRTHgNN 337
Cdd:PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH-RH 672

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 347954488 338 TELAERLMKHLSEMNVKGHSNYVILSNMYAADGKWEGA*KMRRKMKGLGLKKQPGFSSIEIDDHTHVFMAGDSAH 412
Cdd:PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESH 747
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 336-397 2.25e-13

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 64.49  E-value: 2.25e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 347954488  336 NNTELAERLMKHLSEMNVKGHSNYVILSNMYAADGKWEGA*KMRRKMKGLGLKKQPGFSSIE 397
Cdd:pfam20431   2 SNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 118-151 5.54e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.83  E-value: 5.54e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 347954488  118 ISWTAMINGFVKKGFHEEALVWFREMQISGVKPD 151
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 94-382 4.09e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.02  E-value: 4.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488  94 DAYMRSGKVDRAVKLFDEM--PDPDLIS-WTAMINGFVKKGFHEEALVWFRemQISGVKPDYVAIIAALAACtnlgALSF 170
Cdd:COG2956   16 LNYLLNGQPDKAIDLLEEAleLDPETVEaHLALGNLYRRRGEYDRAIRIHQ--KLLERDPDRAEALLELAQD----YLKA 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 171 GLW-----VHRYVLSQDfKNNVRVNNSLIDLYCRCGCVEFAREVFDKMEKRtvvswnsvivgsaANGNAHeslVYFRKMQ 245
Cdd:COG2956   90 GLLdraeeLLEKLLELD-PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL-------------GPENAH---AYCELAE 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 246 EEGFNPDAvtftgaltacshvglvEEGIQYFQTMkrdYKISPR-IEHYGCLVDLYSRAGRLEDALKLVQSM-SMKPNEVV 323
Cdd:COG2956  153 LYLEQGDY----------------DEAIEALEKA---LKLDPDcARALLLLAELYLEQGDYEEAIAALERAlEQDPDYLP 213

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 347954488 324 IGSLLAACRTHGNNTELAERLMKHLSEMNvKGHSNYVILSNMYAADGKWEGA*KMRRKM 382
Cdd:COG2956  214 ALPRLAELYEKLGDPEEALELLRKALELD-PSDDLLLALADLLERKEGLEAALALLERQ 271
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 8-412 5.08e-93

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 297.92  E-value: 5.08e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488   8 MRLAGFEPNHITFIALISGCGDFptGSETLGDLLHGYACKLGLDrTHVMVGTAILGMYSKRCRFGKARCVFDYMEDKNSV 87
Cdd:PLN03077 279 MRELSVDPDLMTITSVISACELL--GDERLGREMHGYVVKTGFA-VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488  88 TWNTMI----------------------------------------------------------------------DAYM 97
Cdd:PLN03077 356 SWTAMIsgyeknglpdkaletyalmeqdnvspdeitiasvlsacaclgdldvgvklhelaerkglisyvvvanaliEMYS 435

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488  98 RSGKVDRAVKLFDEMPDPDLISWTAMINGFVKKGFHEEALVWFREMQISgVKPDYVAIIAALAACTNLGALSFGLWVHRY 177
Cdd:PLN03077 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAH 514

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 178 VLSQDFKNNVRVNNSLIDLYCRCGCVEFAREVFDKMEKrTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNPDAVTFT 257
Cdd:PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 258 GALTACSHVGLVEEGIQYFQTMKRDYKISPRIEHYGCLVDLYSRAGRLEDALKLVQSMSMKPNEVVIGSLLAACRTHgNN 337
Cdd:PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH-RH 672

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 347954488 338 TELAERLMKHLSEMNVKGHSNYVILSNMYAADGKWEGA*KMRRKMKGLGLKKQPGFSSIEIDDHTHVFMAGDSAH 412
Cdd:PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESH 747
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 92-412 6.84e-73

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 241.31  E-value: 6.84e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488  92 MIDAYMRSGKVDRAVKLFDEMPDPDLISWTAMINGFVKKGFHEEALVWFREMQISGVKPDYVAIIAALAACTNLGALSFG 171
Cdd:PLN03081 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 172 LWVHRYVLSQDFKNNVRVNNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNP 251
Cdd:PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 252 DAVTFTGALTACSHVGLVEEGIQYFQTMKRDYKISPRIEHYGCLVDLYSRAGRLEDALKLVQSMSMKPNEVVIGSLLAAC 331
Cdd:PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC 504

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 332 RTHGnNTELAERLMKHLSEMNVKGHSNYVILSNMYAADGKWEGA*KMRRKMKGLGLKKQPGFSSIEIDDHTHVFMAGDSA 411
Cdd:PLN03081 505 RIHK-NLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583


                 .
gi 347954488 412 H 412
Cdd:PLN03081 584 H 584
PLN03077 PLN03077
Protein ECB2; Provisional
 90-367 2.50e-40

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 153.08  E-value: 2.50e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488  90 NTMIDAYMRSGKVDRAVKLFDEMPDPDLISWTAMINGFVKKGFHEEALVWFREMQISGVKPDYVAIIAALAACTNLGALS 169
Cdd:PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 170 FGLWVHRYVLSQDFKNNVRVNNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGF 249
Cdd:PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 250 NPDAVTFTGALTACSHVGLVEEGIQ-YFQTMKRDYKISprIEHYGCLVDLYSRAGRLEDALKLVQSM------------- 315
Cdd:PLN03077 285 DPDLMTITSVISACELLGDERLGREmHGYVVKTGFAVD--VSVCNSLIQMYLSLGSWGEAEKVFSRMetkdavswtamis 362

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 316 ---------------------SMKPNEVVIGSLLAACRTHGNNT------ELAERlmkhlsemnvKGHSNYVILSN---- 364
Cdd:PLN03077 363 gyeknglpdkaletyalmeqdNVSPDEITIASVLSACACLGDLDvgvklhELAER----------KGLISYVVVANalie 432


                 ...
gi 347954488 365 MYA 367
Cdd:PLN03077 433 MYS 435
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 73-355 6.73e-15

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 76.84  E-value: 6.73e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488   73 KARCVFdymedknsvtWNTMIDAYMRSGKVDRAVKLFDEMP----DPDLISWTAMINGFVKKGFHEEALVWFREMQISGV 148
Cdd:PLN03218  469 KADCKL----------YTTLISTCAKSGKVDAMFEVFHEMVnagvEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488  149 KPDYVAIIAALAACTNLGAlsfglwVHRY--VLSqDFK--------NNVRVNnSLIDLYCRCGCVEFAREVFDKME---- 214
Cdd:PLN03218  539 KPDRVVFNALISACGQSGA------VDRAfdVLA-EMKaethpidpDHITVG-ALMKACANAGQVDRAKEVYQMIHeyni 610

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488  215 KRTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNPDAVTFTGALTACSHVGLVEEGIQYFQTMKRDyKISPRIEHYGC 294
Cdd:PLN03218  611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSS 689

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 347954488  295 LVDLYSRAGRLEDALKL---VQSMSMKPNEVVIGSLLAA-CrtHGNNTelaERLMKHLSEMNVKG 355
Cdd:PLN03218  690 LMGACSNAKNWKKALELyedIKSIKLRPTVSTMNALITAlC--EGNQL---PKALEVLSEMKRLG 749
PLN03077 PLN03077
Protein ECB2; Provisional
 121-382 1.34e-14

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 75.66  E-value: 1.34e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 121 TAMINGFVKKGFHEEALVWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWVHRYVLSQDFKNNVRVNNSLIDLYCRC 200
Cdd:PLN03077  55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 201 GCVEFAREVFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNPDAVTFTGALTACS-----------HVGLV 269
Cdd:PLN03077 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGgipdlargrevHAHVV 214

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 270 EEGIQ------------------------YFQTMKRDYKISpriehYGCLVDLYSRAGRLEDALKLVQSM---SMKPNEV 322
Cdd:PLN03077 215 RFGFEldvdvvnalitmyvkcgdvvsarlVFDRMPRRDCIS-----WNAMISGYFENGECLEGLELFFTMrelSVDPDLM 289

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 347954488 323 VIGSLLAACRTHGNntelaERLMKHLSEMNVK-GHSNYVILSN----MYAADGKWEGA*KMRRKM 382
Cdd:PLN03077 290 TITSVISACELLGD-----ERLGREMHGYVVKtGFAVDVSVCNsliqMYLSLGSWGEAEKVFSRM 349
E_motif pfam20431
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ...
 336-397 2.25e-13

E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.


Pssm-ID: 466580 [Multi-domain]  Cd Length: 63  Bit Score: 64.49  E-value: 2.25e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 347954488  336 NNTELAERLMKHLSEMNVKGHSNYVILSNMYAADGKWEGA*KMRRKMKGLGLKKQPGFSSIE 397
Cdd:pfam20431   2 SNVELAEKAANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSWIE 63
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 84-129 3.22e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 63.54  E-value: 3.22e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 347954488   84 KNSVTWNTMIDAYMRSGKVDRAVKLFDEMPD----PDLISWTAMINGFVK 129
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKrgvkPNVYTYTILINGLCK 50
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 8-324 6.83e-12

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 67.59  E-value: 6.83e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488    8 MRLAGFEPNHITFIALISGCGdfptgsetlgdllhgyacklgldrthvmvgtailgmysKRCRFGKARCVFDYMEDKN-- 85
Cdd:PLN03218  498 MVNAGVEANVHTFGALIDGCA--------------------------------------RAGQVAKAFGAYGIMRSKNvk 539

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488   86 --SVTWNTMIDAYMRSGKVDRAVKLFDEMP------DPDLISWTAMINGFVKKGFHEEALVWFREMQISGVKPDYVAIIA 157
Cdd:PLN03218  540 pdRVVFNALISACGQSGAVDRAFDVLAEMKaethpiDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488  158 ALAACTNLGALSFGLWVHRYVLSQDFKNNVRVNNSLIDLYCRCGCVEFAREVFDKMEKR--------------------- 216
Cdd:PLN03218  620 AVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQgiklgtvsysslmgacsnakn 699

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488  217 ------------------TVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNPDAVTFTGALTACSHVGLVEEGIQYFQT 278
Cdd:PLN03218  700 wkkalelyediksiklrpTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 347954488  279 MKRDyKISPRIEHYGCLVDLYSRagRLEDALKLVQSM-SMKPNEVVI 324
Cdd:PLN03218  780 AKED-GIKPNLVMCRCITGLCLR--RFEKACALGEPVvSFDSGRPQI 823
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 85-112 2.06e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 49.65  E-value: 2.06e-08
                          10        20
                  ....*....|....*....|....*...
gi 347954488   85 NSVTWNTMIDAYMRSGKVDRAVKLFDEM 112
Cdd:pfam12854   6 DVVTYNTLINGLCRAGRVDEAFELLDEM 33
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 93-407 2.52e-08

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 56.04  E-value: 2.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488   93 IDAY---MRSGKVDRAVKLFDEMPDPDL-----ISWTAMINGFVKKGFHEEALVWFREMQisgvKPDYVAIIAALAACTN 164
Cdd:PLN03218  374 IDAYnrlLRDGRIKDCIDLLEDMEKRGLldmdkIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCAS 449

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488  165 LGALSFGLWVHRYVLSQDFKNNVRVNNSLIDLYCRCGCVEFAREVFDKME----KRTVVSWNSVIVGSAANGNAHESLVY 240
Cdd:PLN03218  450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVnagvEANVHTFGALIDGCARAGQVAKAFGA 529

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488  241 FRKMQEEGFNPDAVTFTGALTACSHVGLVEEGIQYFQTMKrdykispriehygclvdlysragrledalklVQSMSMKPN 320
Cdd:PLN03218  530 YGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK-------------------------------AETHPIDPD 578

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488  321 EVVIGSLLAACrTHGNNTELAERLMKHLSEMNVKGHSN-YVILSNMYAADGKWEGA*KMRRKMKGLGLKKQPGFSSIEID 399
Cdd:PLN03218  579 HITVGALMKAC-ANAGQVDRAKEVYQMIHEYNIKGTPEvYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657


                  ....*...
gi 347954488  400 DHTHVFMA 407
Cdd:PLN03218  658 VAGHAGDL 665
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 115-160 5.13e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 48.90  E-value: 5.13e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 347954488  115 PDLISWTAMINGFVKKGFHEEALVWFREMQISGVKPD---YVAIIAALA 160
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNvytYTILINGLC 49
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 87-112 3.83e-07

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 45.92  E-value: 3.83e-07
                          10        20
                  ....*....|....*....|....*.
gi 347954488   87 VTWNTMIDAYMRSGKVDRAVKLFDEM 112
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEM 26
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 118-148 4.06e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 43.22  E-value: 4.06e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 347954488  118 ISWTAMINGFVKKGFHEEALVWFREMQISGV 148
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 118-151 5.54e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.83  E-value: 5.54e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 347954488  118 ISWTAMINGFVKKGFHEEALVWFREMQISGVKPD 151
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 87-112 1.38e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 41.67  E-value: 1.38e-05
                          10        20
                  ....*....|....*....|....*.
gi 347954488   87 VTWNTMIDAYMRSGKVDRAVKLFDEM 112
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEM 26
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 216-265 7.02e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 40.04  E-value: 7.02e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 347954488  216 RTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNPDAVTFTGALTACSH 265
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 191-216 2.29e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 38.22  E-value: 2.29e-04
                          10        20
                  ....*....|....*....|....*.
gi 347954488  191 NSLIDLYCRCGCVEFAREVFDKMEKR 216
Cdd:pfam01535   4 NSLISGYCKNGKLEEALELFKEMKEK 29
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 94-382 4.09e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.02  E-value: 4.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488  94 DAYMRSGKVDRAVKLFDEM--PDPDLIS-WTAMINGFVKKGFHEEALVWFRemQISGVKPDYVAIIAALAACtnlgALSF 170
Cdd:COG2956   16 LNYLLNGQPDKAIDLLEEAleLDPETVEaHLALGNLYRRRGEYDRAIRIHQ--KLLERDPDRAEALLELAQD----YLKA 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 171 GLW-----VHRYVLSQDfKNNVRVNNSLIDLYCRCGCVEFAREVFDKMEKRtvvswnsvivgsaANGNAHeslVYFRKMQ 245
Cdd:COG2956   90 GLLdraeeLLEKLLELD-PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL-------------GPENAH---AYCELAE 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 246 EEGFNPDAvtftgaltacshvglvEEGIQYFQTMkrdYKISPR-IEHYGCLVDLYSRAGRLEDALKLVQSM-SMKPNEVV 323
Cdd:COG2956  153 LYLEQGDY----------------DEAIEALEKA---LKLDPDcARALLLLAELYLEQGDYEEAIAALERAlEQDPDYLP 213

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 347954488 324 IGSLLAACRTHGNNTELAERLMKHLSEMNvKGHSNYVILSNMYAADGKWEGA*KMRRKM 382
Cdd:COG2956  214 ALPRLAELYEKLGDPEEALELLRKALELD-PSDDLLLALADLLERKEGLEAALALLERQ 271
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 241-299 8.81e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 37.34  E-value: 8.81e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 347954488  241 FRKMQEEGFNPDAVTFTGALTACSHVGLVEEGIQYFQTMKRDyKISPRIEHYGCLVDLY 299
Cdd:pfam13812   3 LREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKK-GIKPTLDTYNAILGVI 60
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 191-225 1.57e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 36.19  E-value: 1.57e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 347954488  191 NSLIDLYCRCGCVEFAREVFDKMEKR----TVVSWNSVI 225
Cdd:pfam13041   7 NTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILI 45
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 191-216 1.91e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.51  E-value: 1.91e-03
                          10        20
                  ....*....|....*....|....*.
gi 347954488  191 NSLIDLYCRCGCVEFAREVFDKMEKR 216
Cdd:TIGR00756   4 NTLIDGLCKAGRVEEALELFKEMKER 29
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 295-382 2.38e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 38.06  E-value: 2.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 295 LVDLYSRAGRLEDALK-LVQSMSMKPNEVVIGSLLAACRTHGNNTELAERLMKHLSEM---NVKGHSNyviLSNMYAADG 370
Cdd:COG4235   23 LGRAYLRLGRYDEALAaYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALdpdNPEALYL---LGLAAFQQG 99

                         90
                 ....*....|..
gi 347954488 371 KWEGA*KMRRKM 382
Cdd:COG4235  100 DYAEAIAAWQKL 111
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 186-214 3.80e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 34.63  E-value: 3.80e-03
                          10        20
                  ....*....|....*....|....*....
gi 347954488  186 NVRVNNSLIDLYCRCGCVEFAREVFDKME 214
Cdd:pfam12854   6 DVVTYNTLINGLCRAGRVDEAFELLDEME 34
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 270-385 4.36e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.48  E-value: 4.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 270 EEGIQYFQTMKRDYKISPRIehYGCLVDLYSRAGRLEDALKLVQ-SMSMKPNEVVIGSLLAACRTHGNNTELAERLMKHL 348
Cdd:COG4783   21 DEAEALLEKALELDPDNPEA--FALLGEILLQLGDLDEAIVLLHeALELDPDEPEARLNLGLALLKAGDYDEALALLEKA 98

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 347954488 349 SEMNvKGHSN-YVILSNMYAADGKWEGA*KMRRKMKGL 385
Cdd:COG4783   99 LKLD-PEHPEaYLRLARAYRALGRPDEAIAALEKALEL 135
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
232-381 6.70e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 38.06  E-value: 6.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 232 GNAHESLVYFRKMQEegFNPD-AVTFTGALTACSHVGLVEEGIQYFQtmkRDYKISPR-IEHYGCLVDLYSRAGRLEDAL 309
Cdd:COG0457   22 GRYEEAIEDYEKALE--LDPDdAEALYNLGLAYLRLGRYEEALADYE---QALELDPDdAEALNNLGLALQALGRYEEAL 96

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 347954488 310 KLV-QSMSMKPNEVVIGSLLAACRTHGNNTELAERLMKHLSEMNVKGHSNYVILSNMYAADGKWEGA*KMRRK 381
Cdd:COG0457   97 EDYdKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
64-216 8.32e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 37.68  E-value: 8.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488  64 MYSKRCRFGKARCVFDY---MEDKNSVTWNTMIDAYMRSGKVDRAVKLFDE----MPDpDLISWTAMINGFVKKGFHEEA 136
Cdd:COG0457   17 AYRRLGRYEEAIEDYEKaleLDPDDAEALYNLGLAYLRLGRYEEALADYEQalelDPD-DAEALNNLGLALQALGRYEEA 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 347954488 137 LVWFRemQISGVKPDYVAIIAALA-ACTNLGALSFGLWVHRYVLSQDfKNNVRVNNSLIDLYCRCGCVEFAREVFDKMEK 215
Cdd:COG0457   96 LEDYD--KALELDPDDAEALYNLGlALLELGRYDEAIEAYERALELD-PDDADALYNLGIALEKLGRYEEALELLEKLEA 172


                 .
gi 347954488 216 R 216
Cdd:COG0457  173 A 173
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 77-129 9.09e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 34.64  E-value: 9.09e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 347954488   77 VFDYMEDK----NSVTWNTMIDAYMRSGKVDRAVKLFDEMPD----PDLISWTAMINGFVK 129
Cdd:pfam13812   2 ILREMVRDgiqlNVNTYTHLLHAYANVGNLKLALEIFERMKKkgikPTLDTYNAILGVIGG 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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