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Conserved domains on  [gi|343479835|gb|AEM44580|]
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gp 1.6 [Enterobacteria phage T7M]

Protein Classification

PHA00455 family protein( domain architecture ID 10009711)

PHA00455 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA00455 PHA00455
hypothetical protein
 1-85 6.55e-43

hypothetical protein


:

Pssm-ID: 133900  Cd Length: 85  Bit Score: 134.12  E-value: 6.55e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343479835  1 MRLHFNTSNGIFSVRREDRSTAVASERNAKLPLIGSVVPLSPRVHLLITRGEFIKAMNKERPHLEAVVTYWPRIRLFVKL 80
Cdd:PHA00455  1 MRLHFNKSNGIFSVRRNDRSTVKASEKHAKLPLIGDTVPLAPRVHALITRGKFEKATQKSRPFVPVVVTKWPRVRLFVER 80


                ....*
gi 343479835 81 IKEVL 85
Cdd:PHA00455 81 IKEVF 85
 
Name Accession Description Interval E-value
PHA00455 PHA00455
hypothetical protein
 1-85 6.55e-43

hypothetical protein


Pssm-ID: 133900  Cd Length: 85  Bit Score: 134.12  E-value: 6.55e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343479835  1 MRLHFNTSNGIFSVRREDRSTAVASERNAKLPLIGSVVPLSPRVHLLITRGEFIKAMNKERPHLEAVVTYWPRIRLFVKL 80
Cdd:PHA00455  1 MRLHFNKSNGIFSVRRNDRSTVKASEKHAKLPLIGDTVPLAPRVHALITRGKFEKATQKSRPFVPVVVTKWPRVRLFVER 80


                ....*
gi 343479835 81 IKEVL 85
Cdd:PHA00455 81 IKEVF 85
BC10 pfam06726
Bladder cancer-related protein BC10; This family consists of a series of short proteins of ...
 2-67 2.13e-18

Bladder cancer-related protein BC10; This family consists of a series of short proteins of around 90 residues in length. The human protein BC10 has been implicated in bladder cancer where the transcription of the gene coding for this protein is nearly completely abolished in highly invasive transitional cell carcinomas (TCCs). The protein is a small globular protein containing two transmembrane helices, and it is a multiply edited transcript. All the editing sites are found in either the 5'-UTR or the N-terminal section of the protein, which is predicted to be outside the membrane. The three coding edits are all non-synonymous and predicted to encode exposed residues. The function of this family is unknown.


Pssm-ID: 369052  Cd Length: 65  Bit Score: 71.30  E-value: 2.13e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 343479835   2 RLHFNTSNGIFSVRrEDRSTAVASERNAKLPLIGSVVPLSPRVHLLITRGEFIKAMNkeRPHLEAV 67
Cdd:pfam06726  3 CLRWNIPVLLIPVP-SNRSLVNASPMFAVLFLIGFYLELRPCVYCSITLGIFIFAIC--RPNWSDF 65
 
Name Accession Description Interval E-value
PHA00455 PHA00455
hypothetical protein
 1-85 6.55e-43

hypothetical protein


Pssm-ID: 133900  Cd Length: 85  Bit Score: 134.12  E-value: 6.55e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 343479835  1 MRLHFNTSNGIFSVRREDRSTAVASERNAKLPLIGSVVPLSPRVHLLITRGEFIKAMNKERPHLEAVVTYWPRIRLFVKL 80
Cdd:PHA00455  1 MRLHFNKSNGIFSVRRNDRSTVKASEKHAKLPLIGDTVPLAPRVHALITRGKFEKATQKSRPFVPVVVTKWPRVRLFVER 80


                ....*
gi 343479835 81 IKEVL 85
Cdd:PHA00455 81 IKEVF 85
BC10 pfam06726
Bladder cancer-related protein BC10; This family consists of a series of short proteins of ...
 2-67 2.13e-18

Bladder cancer-related protein BC10; This family consists of a series of short proteins of around 90 residues in length. The human protein BC10 has been implicated in bladder cancer where the transcription of the gene coding for this protein is nearly completely abolished in highly invasive transitional cell carcinomas (TCCs). The protein is a small globular protein containing two transmembrane helices, and it is a multiply edited transcript. All the editing sites are found in either the 5'-UTR or the N-terminal section of the protein, which is predicted to be outside the membrane. The three coding edits are all non-synonymous and predicted to encode exposed residues. The function of this family is unknown.


Pssm-ID: 369052  Cd Length: 65  Bit Score: 71.30  E-value: 2.13e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 343479835   2 RLHFNTSNGIFSVRrEDRSTAVASERNAKLPLIGSVVPLSPRVHLLITRGEFIKAMNkeRPHLEAV 67
Cdd:pfam06726  3 CLRWNIPVLLIPVP-SNRSLVNASPMFAVLFLIGFYLELRPCVYCSITLGIFIFAIC--RPNWSDF 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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